Wall clock time and date at job start Tue Mar 31 2020 06:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 114.00122 * 2 1 4 4 C 1.52994 * 109.46956 * 179.97438 * 3 2 1 5 5 N 1.46504 * 115.56288 * 325.45492 * 4 3 2 6 6 C 1.46508 * 119.99457 * 269.39199 * 5 4 3 7 7 C 1.34777 * 120.00422 * 89.38929 * 5 4 3 8 8 O 1.21548 * 119.99715 * 357.49225 * 7 5 4 9 9 C 1.47882 * 120.00044 * 177.48434 * 7 5 4 10 10 C 1.39927 * 120.02265 * 45.46517 * 9 7 5 11 11 C 1.38326 * 120.35854 * 179.97438 * 10 9 7 12 12 C 1.37757 * 120.41102 * 0.02562 * 11 10 9 13 13 C 1.40747 * 120.03767 * 0.02562 * 12 11 10 14 14 C 1.41445 * 120.17414 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00114 * 31.53770 * 14 13 12 16 16 C 1.39933 * 119.99859 * 211.53479 * 14 13 12 17 17 N 1.30831 * 119.99959 * 7.83083 * 16 14 13 18 18 Si 1.86802 * 120.00095 * 187.82474 * 16 14 13 19 19 H 1.48503 * 109.47141 * 90.00379 * 18 16 14 20 20 H 1.48499 * 109.47168 * 210.00161 * 18 16 14 21 21 H 1.48501 * 109.47112 * 330.00635 * 18 16 14 22 22 C 1.38991 * 120.02836 * 225.18665 * 9 7 5 23 23 C 1.52998 * 117.49908 * 179.76422 * 4 3 2 24 24 C 1.53008 * 60.03473 * 252.51895 * 23 4 3 25 25 H 1.09000 * 109.46953 * 60.00003 * 1 2 3 26 26 H 1.08993 * 109.47445 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47006 * 300.00668 * 1 2 3 28 28 H 1.08992 * 109.47225 * 59.99523 * 3 2 1 29 29 H 1.09004 * 109.46388 * 299.99398 * 3 2 1 30 30 H 1.08999 * 109.46856 * 114.48368 * 6 5 4 31 31 H 1.09003 * 109.46458 * 234.48081 * 6 5 4 32 32 H 1.09000 * 109.47237 * 354.48058 * 6 5 4 33 33 H 1.08000 * 119.81632 * 359.95685 * 10 9 7 34 34 H 1.07999 * 119.79534 * 180.02562 * 11 10 9 35 35 H 1.07996 * 119.98191 * 179.97438 * 12 11 10 36 36 H 0.97000 * 119.99826 * 179.97438 * 17 16 14 37 37 H 1.08006 * 120.20131 * 0.02562 * 22 9 7 38 38 H 1.09000 * 117.50203 * 145.02195 * 23 4 3 39 39 H 1.08994 * 117.49844 * 0.02562 * 23 4 3 40 40 H 1.08999 * 117.49477 * 107.47159 * 24 23 4 41 41 H 1.08996 * 117.49648 * 252.47719 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 4.0793 0.0496 0.7505 6 6 4.4201 0.2034 2.1671 7 6 4.2661 -1.1360 0.1373 8 8 3.9409 -1.2767 -1.0254 9 6 4.8667 -2.2656 0.8790 10 6 4.4279 -2.5656 2.1734 11 6 4.9845 -3.6210 2.8733 12 6 5.9773 -4.3883 2.3048 13 6 6.4324 -4.1009 1.0043 14 6 7.4520 -4.8866 0.4180 15 1 7.5389 -5.9334 0.6691 16 6 8.3481 -4.3076 -0.4875 17 7 8.3422 -3.0130 -0.6763 18 14 9.5527 -5.3830 -1.4266 19 1 8.9333 -5.8221 -2.7029 20 1 10.7863 -4.6086 -1.7158 21 1 9.8959 -6.5734 -0.6077 22 6 5.8636 -3.0337 0.2888 23 6 4.3469 2.4816 -0.0048 24 6 4.2792 1.6171 -1.2655 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8900 28 1 1.6886 1.8464 0.8899 29 1 1.6887 1.8462 -0.8901 30 1 3.7631 -0.4243 2.7690 31 1 5.4558 -0.0971 2.3262 32 1 4.2952 1.2459 2.4598 33 1 3.6506 -1.9698 2.6285 34 1 4.6386 -3.8447 3.8716 35 1 6.4074 -5.2104 2.8576 36 1 8.9636 -2.6116 -1.3038 37 1 6.2025 -2.8082 -0.7116 38 1 5.2854 2.4905 0.5494 39 1 3.7942 3.4210 -0.0085 40 1 3.6816 1.9877 -2.0983 41 1 5.1733 1.0576 -1.5406 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597941071.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:34 Heat of formation + Delta-G solvation = -39.589239 kcal Electronic energy + Delta-G solvation = -23409.749938 eV Core-core repulsion = 20062.188738 eV Total energy + Delta-G solvation = -3347.561200 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.28134 -39.45471 -38.49010 -37.58076 -35.70838 -34.87115 -31.75760 -31.28166 -29.14824 -27.72069 -27.17141 -26.47526 -24.64478 -23.40668 -22.77853 -21.71284 -19.95059 -19.02031 -17.92414 -17.46928 -17.16588 -16.87892 -16.71996 -16.56034 -16.32255 -15.66332 -15.36125 -14.91509 -14.75679 -14.39342 -14.16434 -13.92879 -13.52892 -13.48058 -13.31214 -13.14636 -12.88523 -12.82897 -12.49402 -12.38399 -12.23545 -12.10097 -11.91684 -11.69839 -11.44312 -11.18865 -11.10932 -10.55700 -10.44772 -9.62287 -9.37393 -9.30434 -8.59783 -6.41187 0.56480 1.01871 1.35886 1.46520 1.50408 1.95666 2.10856 2.20640 2.47171 2.77933 3.02287 3.64162 3.70250 3.86927 3.97391 3.99306 4.28924 4.34148 4.35780 4.48525 4.50551 4.52032 4.64115 4.66149 4.68311 4.81063 4.82694 4.88517 4.94046 5.01587 5.10650 5.14964 5.20823 5.33076 5.53408 5.76460 5.87390 5.97901 6.04950 6.29141 6.34760 6.44973 6.63627 6.90901 6.94959 7.37316 8.37449 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019409 B = 0.004803 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.250890 B = 5828.818051 C = 6405.923335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.411 6.411 3 C 0.096 3.904 4 C 0.073 3.927 5 N -0.575 5.575 6 C 0.083 3.917 7 C 0.571 3.429 8 O -0.575 6.575 9 C -0.129 4.129 10 C -0.192 4.192 11 C -0.098 4.098 12 C -0.212 4.212 13 C 0.071 3.929 14 C -0.502 4.502 15 H 0.081 0.919 16 C 0.027 3.973 17 N -0.843 5.843 18 Si 0.985 3.015 19 H -0.268 1.268 20 H -0.268 1.268 21 H -0.252 1.252 22 C -0.128 4.128 23 C -0.127 4.127 24 C -0.177 4.177 25 H 0.050 0.950 26 H 0.078 0.922 27 H 0.060 0.940 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.048 0.952 32 H 0.103 0.897 33 H 0.134 0.866 34 H 0.139 0.861 35 H 0.110 0.890 36 H 0.283 0.717 37 H 0.088 0.912 38 H 0.103 0.897 39 H 0.145 0.855 40 H 0.115 0.885 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.762 12.618 5.073 16.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.330 6.330 3 C 0.018 3.982 4 C -0.013 4.013 5 N -0.306 5.306 6 C -0.059 4.059 7 C 0.362 3.638 8 O -0.455 6.455 9 C -0.132 4.132 10 C -0.211 4.211 11 C -0.115 4.115 12 C -0.231 4.231 13 C 0.069 3.931 14 C -0.533 4.533 15 H 0.099 0.901 16 C -0.185 4.185 17 N -0.470 5.470 18 Si 0.806 3.194 19 H -0.193 1.193 20 H -0.193 1.193 21 H -0.175 1.175 22 C -0.148 4.148 23 C -0.164 4.164 24 C -0.215 4.215 25 H 0.069 0.931 26 H 0.097 0.903 27 H 0.078 0.922 28 H 0.098 0.902 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.122 0.878 33 H 0.151 0.849 34 H 0.157 0.843 35 H 0.128 0.872 36 H 0.093 0.907 37 H 0.107 0.893 38 H 0.122 0.878 39 H 0.163 0.837 40 H 0.133 0.867 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.699 12.574 4.370 16.471 hybrid contribution 0.659 -0.552 -0.815 1.184 sum -9.040 12.023 3.555 15.457 Atomic orbital electron populations 1.22852 0.79832 1.03001 1.01011 1.88057 1.21045 1.28436 1.95511 1.22340 0.89138 0.84873 1.01813 1.20969 0.91584 0.89062 0.99674 1.46964 1.63363 1.08673 1.11644 1.22083 1.00514 1.03882 0.79371 1.18688 0.76426 0.83062 0.85651 1.90630 1.52336 1.83604 1.18946 1.19777 0.99666 0.97359 0.96379 1.21014 1.04442 1.01962 0.93679 1.20925 0.96063 0.94923 0.99632 1.21464 1.02981 1.03651 0.95053 1.17909 0.91566 0.92023 0.91607 1.19829 1.12106 0.97670 1.23654 0.90095 1.26787 0.99572 0.96307 0.95834 1.69865 1.34206 1.12541 1.30403 0.85152 0.76912 0.78811 0.78511 1.19319 1.19291 1.17498 1.21249 0.96414 0.98316 0.98839 1.23488 1.01228 0.93282 0.98428 1.23228 1.02089 1.03155 0.93004 0.93134 0.90332 0.92187 0.90200 0.91118 0.90933 0.93275 0.87808 0.84887 0.84350 0.87230 0.90675 0.89339 0.87838 0.83687 0.86655 0.92161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 11.01 113.37 1.25 1.89 16 2 O -0.41 -13.21 9.72 -148.98 -1.45 -14.66 16 3 C 0.10 2.35 6.16 71.98 0.44 2.79 16 4 C 0.07 2.13 1.65 3.63 0.01 2.13 16 5 N -0.58 -20.73 2.73 -802.55 -2.19 -22.93 16 6 C 0.08 2.35 8.93 127.77 1.14 3.49 16 7 C 0.57 27.27 6.64 86.80 0.58 27.85 16 8 O -0.58 -31.57 16.13 -3.87 -0.06 -31.63 16 9 C -0.13 -6.47 5.14 -20.13 -0.10 -6.57 16 10 C -0.19 -8.12 8.17 22.70 0.19 -7.94 16 11 C -0.10 -4.04 10.01 22.18 0.22 -3.82 16 12 C -0.21 -10.22 9.78 22.77 0.22 -10.00 16 13 C 0.07 3.99 5.52 -21.32 -0.12 3.87 16 14 C -0.50 -28.22 9.05 23.47 0.21 -28.01 16 15 H 0.08 4.31 7.86 -2.91 -0.02 4.29 16 16 C 0.03 1.46 5.29 85.25 0.45 1.92 16 17 N -0.84 -47.75 10.90 21.82 0.24 -47.52 16 18 Si 0.99 40.84 29.57 68.60 2.03 42.87 16 19 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 20 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 21 H -0.25 -9.85 7.11 99.48 0.71 -9.15 16 22 C -0.13 -7.37 8.27 23.01 0.19 -7.18 16 23 C -0.13 -2.61 9.63 30.60 0.29 -2.31 16 24 C -0.18 -5.25 9.12 30.62 0.28 -4.97 16 25 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 28 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.07 1.46 7.90 -2.39 -0.02 1.44 16 30 H 0.07 1.95 5.48 -2.39 -0.01 1.94 16 31 H 0.05 1.58 7.70 -2.39 -0.02 1.56 16 32 H 0.10 2.06 7.63 -2.39 -0.02 2.04 16 33 H 0.13 4.72 5.51 -2.91 -0.02 4.70 16 34 H 0.14 4.48 8.06 -2.91 -0.02 4.46 16 35 H 0.11 4.86 8.06 -2.91 -0.02 4.84 16 36 H 0.28 14.74 8.30 -92.71 -0.77 13.97 16 37 H 0.09 5.69 6.35 -2.91 -0.02 5.67 16 38 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.15 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.12 2.92 8.05 -2.39 -0.02 2.90 16 41 H 0.06 2.29 8.11 -2.39 -0.02 2.27 16 Total: -1.00 -75.82 342.61 4.84 -70.99 By element: Atomic # 1 Polarization: 28.72 SS G_CDS: 1.02 Total: 29.74 kcal Atomic # 6 Polarization: -32.11 SS G_CDS: 5.25 Total: -26.86 kcal Atomic # 7 Polarization: -68.49 SS G_CDS: -1.96 Total: -70.44 kcal Atomic # 8 Polarization: -44.78 SS G_CDS: -1.51 Total: -46.29 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.87 kcal Total: -75.82 4.84 -70.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597941071.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.397 kcal (2) G-P(sol) polarization free energy of solvation -75.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds