Wall clock time and date at job start Tue Mar 31 2020 06:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35905 * 117.00240 * 2 1 4 4 C 1.38755 * 120.05189 * 0.02562 * 3 2 1 5 5 C 1.38119 * 119.94425 * 179.97438 * 4 3 2 6 6 C 1.38291 * 120.05480 * 0.02562 * 5 4 3 7 7 C 1.38247 * 120.11159 * 359.97438 * 6 5 4 8 8 C 1.38165 * 120.05118 * 359.74026 * 7 6 5 9 9 C 1.50699 * 120.02165 * 180.25451 * 8 7 6 10 10 H 1.09002 * 115.54637 * 154.61044 * 9 8 7 11 11 C 1.53001 * 117.50212 * 8.90305 * 9 8 7 12 12 C 1.53001 * 60.00011 * 252.50714 * 11 9 8 13 13 H 1.08997 * 117.51741 * 107.47524 * 12 11 9 14 14 N 1.46501 * 117.50254 * 252.51064 * 12 11 9 15 15 C 1.34777 * 119.99974 * 223.62137 * 14 12 11 16 16 O 1.21280 * 119.99965 * 0.02562 * 15 14 12 17 17 C 1.50700 * 119.99982 * 179.97438 * 15 14 12 18 18 C 1.53003 * 109.47158 * 180.02562 * 17 15 14 19 19 C 1.50697 * 109.46813 * 179.97438 * 18 17 15 20 20 H 1.07998 * 120.00371 * 0.02562 * 19 18 17 21 21 C 1.37882 * 119.99822 * 179.97438 * 19 18 17 22 22 N 1.31509 * 120.00251 * 180.02562 * 21 19 18 23 23 Si 1.86810 * 119.99738 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.46545 * 90.00120 * 23 21 19 25 25 H 1.48499 * 109.46993 * 210.00006 * 23 21 19 26 26 H 1.48493 * 109.47137 * 330.00372 * 23 21 19 27 27 H 1.09002 * 109.47220 * 299.99819 * 1 2 3 28 28 H 1.08996 * 109.47672 * 59.99762 * 1 2 3 29 29 H 1.09006 * 109.47331 * 179.97438 * 1 2 3 30 30 H 1.08000 * 120.03110 * 359.95190 * 4 3 2 31 31 H 1.08000 * 119.97761 * 179.97438 * 5 4 3 32 32 H 1.08001 * 119.94159 * 180.02562 * 6 5 4 33 33 H 1.07997 * 119.97068 * 180.02562 * 7 6 5 34 34 H 1.08999 * 117.49722 * 359.97438 * 11 9 8 35 35 H 1.08996 * 117.49905 * 145.02304 * 11 9 8 36 36 H 0.97000 * 119.99677 * 43.61628 * 14 12 11 37 37 H 1.09009 * 109.47058 * 299.99948 * 17 15 14 38 38 H 1.08993 * 109.47279 * 59.99897 * 17 15 14 39 39 H 1.09004 * 109.46398 * 299.99841 * 18 17 15 40 40 H 1.09001 * 109.47288 * 59.99336 * 18 17 15 41 41 H 0.97001 * 120.00092 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6047 0.0011 6 6 3.3018 3.6758 0.0005 7 6 4.0559 2.5171 0.0000 8 6 3.4310 1.2849 0.0054 9 6 4.2537 0.0222 0.0106 10 1 3.7660 -0.8548 0.4362 11 6 5.7628 0.1631 0.2197 12 6 5.2124 -0.2012 -1.1606 13 1 5.2478 0.5649 -1.9351 14 7 5.4050 -1.5776 -1.6241 15 6 5.7942 -1.8132 -2.8927 16 8 5.9854 -0.8859 -3.6505 17 6 5.9929 -3.2290 -3.3692 18 6 6.4319 -3.2170 -4.8349 19 6 6.6312 -4.6328 -5.3111 20 1 6.4613 -5.4586 -4.6362 21 6 7.0295 -4.8739 -6.6090 22 7 7.2029 -6.1094 -7.0248 23 14 7.3213 -3.4455 -7.7771 24 1 8.7389 -3.0129 -7.6853 25 1 7.0235 -3.8742 -9.1673 26 1 6.4335 -2.3142 -7.4070 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 0.2127 2.3204 0.0002 31 1 1.3339 4.5114 0.0011 32 1 3.7921 4.6381 0.0014 33 1 5.1343 2.5752 0.0000 34 1 6.1606 1.1691 0.3531 35 1 6.2682 -0.6213 0.7830 36 1 5.2525 -2.3192 -1.0178 37 1 6.7606 -3.7117 -2.7643 38 1 5.0567 -3.7790 -3.2746 39 1 5.6645 -2.7342 -5.4400 40 1 7.3683 -2.6670 -4.9292 41 1 7.4834 -6.2790 -7.9378 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598308029.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:34 Heat of formation + Delta-G solvation = -31.642236 kcal Electronic energy + Delta-G solvation = -21853.283704 eV Core-core repulsion = 18506.067112 eV Total energy + Delta-G solvation = -3347.216592 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.64706 -39.38592 -37.99195 -36.83789 -33.45408 -33.05761 -31.27271 -30.47953 -30.38165 -27.52163 -26.19377 -24.14955 -22.63463 -22.13392 -20.93867 -20.62799 -19.71144 -18.37799 -17.21979 -16.80145 -16.15022 -16.04891 -15.84262 -15.65027 -14.94914 -14.70387 -14.33260 -14.04005 -13.93561 -13.40977 -13.10847 -12.84477 -12.65489 -12.53377 -12.29933 -12.21722 -11.62755 -11.41726 -11.39987 -11.31487 -11.14665 -10.92821 -10.65163 -10.13902 -10.02053 -9.76202 -9.29534 -9.17383 -9.10022 -8.68855 -8.48646 -8.18272 -6.01025 -3.99633 1.01764 1.18351 3.02108 3.02711 3.30134 3.39946 3.46162 3.47232 3.57846 3.98478 4.40042 4.51945 4.53101 4.71570 4.74328 4.80819 4.83819 4.86529 4.96829 5.11244 5.19405 5.21168 5.33882 5.34556 5.35897 5.61268 5.74271 5.85431 5.95104 6.07055 6.10901 6.12148 6.20802 6.30211 6.50900 6.68509 6.71735 7.13240 7.39078 7.46178 7.77403 7.82160 8.52161 8.66929 9.02142 9.62128 11.11815 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.022519 B = 0.002948 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.074231 B = 9494.656712 C = 9705.314448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.311 6.311 3 C 0.134 3.866 4 C -0.208 4.208 5 C -0.086 4.086 6 C -0.154 4.154 7 C -0.083 4.083 8 C -0.078 4.078 9 C -0.117 4.117 10 H 0.118 0.882 11 C -0.189 4.189 12 C 0.102 3.898 13 H 0.136 0.864 14 N -0.712 5.712 15 C 0.514 3.486 16 O -0.538 6.538 17 C -0.122 4.122 18 C 0.001 3.999 19 C -0.524 4.524 20 H 0.073 0.927 21 C 0.069 3.931 22 N -0.904 5.904 23 Si 0.877 3.123 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.261 1.261 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.101 0.899 30 H 0.127 0.873 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.132 0.868 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.401 0.599 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.024 0.976 40 H 0.019 0.981 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.303 17.691 20.193 29.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.224 6.224 3 C 0.089 3.911 4 C -0.226 4.226 5 C -0.105 4.105 6 C -0.172 4.172 7 C -0.101 4.101 8 C -0.079 4.079 9 C -0.137 4.137 10 H 0.136 0.864 11 C -0.227 4.227 12 C -0.004 4.004 13 H 0.153 0.847 14 N -0.363 5.363 15 C 0.303 3.697 16 O -0.414 6.414 17 C -0.161 4.161 18 C -0.037 4.037 19 C -0.562 4.562 20 H 0.091 0.909 21 C -0.133 4.133 22 N -0.543 5.543 23 Si 0.704 3.296 24 H -0.202 1.202 25 H -0.215 1.215 26 H -0.185 1.185 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.119 0.881 30 H 0.145 0.855 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.149 0.851 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.235 0.765 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.042 0.958 40 H 0.038 0.962 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.028 18.029 19.432 29.109 hybrid contribution -0.263 0.439 -0.261 0.574 sum -12.291 18.467 19.172 29.320 Atomic orbital electron populations 1.23069 0.78447 1.04113 1.01185 1.86103 1.21230 1.26646 1.88422 1.18790 0.91555 0.84372 0.96385 1.21213 0.99988 0.92345 1.09095 1.20926 0.94730 0.96911 0.97889 1.21035 0.93897 0.98350 1.03931 1.20946 1.00276 0.90985 0.97887 1.18440 0.89926 0.94117 1.05405 1.21326 0.90908 0.97196 1.04232 0.86382 1.23655 0.94827 1.03526 1.00717 1.21699 1.00752 0.87003 0.90987 0.84680 1.45614 1.70633 1.06461 1.13593 1.21580 0.74527 0.93253 0.80308 1.90645 1.49892 1.46447 1.54414 1.21677 1.03090 0.90131 1.01241 1.19374 0.96927 0.97668 0.89692 1.21117 1.46290 0.91265 0.97562 0.90924 1.24973 0.94646 0.95526 0.98114 1.69911 1.47632 1.19133 1.17629 0.86796 0.79337 0.83488 0.79943 1.20228 1.21453 1.18513 0.92788 0.92627 0.88103 0.85471 0.85883 0.85811 0.85064 0.87852 0.87991 0.76500 0.89507 0.89493 0.95804 0.96228 0.92733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.41 9.68 -19.44 -0.19 -3.60 16 3 C 0.13 1.50 6.66 -39.22 -0.26 1.24 16 4 C -0.21 -1.94 9.04 -39.43 -0.36 -2.30 16 5 C -0.09 -0.74 10.04 -39.61 -0.40 -1.14 16 6 C -0.15 -1.36 10.04 -39.56 -0.40 -1.76 16 7 C -0.08 -0.82 9.29 -39.60 -0.37 -1.19 16 8 C -0.08 -0.88 5.62 -104.48 -0.59 -1.47 16 9 C -0.12 -1.29 5.67 -91.77 -0.52 -1.81 16 10 H 0.12 1.28 7.77 -51.93 -0.40 0.88 16 11 C -0.19 -1.86 9.78 -26.73 -0.26 -2.12 16 12 C 0.10 1.33 6.06 -67.93 -0.41 0.92 16 13 H 0.14 2.05 7.40 -51.93 -0.38 1.66 16 14 N -0.71 -10.05 5.57 -53.80 -0.30 -10.35 16 15 C 0.51 9.65 7.83 -10.98 -0.09 9.57 16 16 O -0.54 -12.26 15.55 5.56 0.09 -12.17 16 17 C -0.12 -2.39 5.64 -27.88 -0.16 -2.55 16 18 C 0.00 0.03 3.33 -27.88 -0.09 -0.06 16 19 C -0.52 -15.17 9.66 -34.44 -0.33 -15.50 16 20 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 21 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 22 N -0.90 -28.26 13.96 55.43 0.77 -27.49 16 23 Si 0.88 22.84 27.47 -169.99 -4.67 18.17 16 24 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 26 H -0.26 -6.78 6.54 56.52 0.37 -6.41 16 27 H 0.05 0.30 7.66 -51.93 -0.40 -0.10 16 28 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 29 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.13 0.91 6.30 -52.49 -0.33 0.58 16 31 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 32 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 33 H 0.13 1.09 6.03 -52.49 -0.32 0.77 16 34 H 0.10 0.88 6.18 -51.93 -0.32 0.56 16 35 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.40 4.46 8.83 -40.82 -0.36 4.10 16 37 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 38 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 39 H 0.02 0.63 7.16 -51.93 -0.37 0.26 16 40 H 0.02 0.51 7.53 -51.93 -0.39 0.12 16 41 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 344.42 15.07 5.19 5.19 Total: -1.00 -35.49 344.42 -8.24 -43.73 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -5.80 Total: 1.53 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: -3.34 Total: -15.02 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: 0.47 Total: -37.84 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: -0.10 Total: -15.77 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -4.67 Total: 18.17 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.49 -8.24 -43.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598308029.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.091 kcal (2) G-P(sol) polarization free energy of solvation -35.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds