Wall clock time and date at job start Tue Mar 31 2020 06:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35905 * 117.00240 * 2 1 4 4 C 1.38755 * 120.05189 * 0.02562 * 3 2 1 5 5 C 1.38119 * 119.94425 * 179.97438 * 4 3 2 6 6 C 1.38291 * 120.05480 * 0.02562 * 5 4 3 7 7 C 1.38247 * 120.11159 * 359.97438 * 6 5 4 8 8 C 1.38165 * 120.05118 * 359.74026 * 7 6 5 9 9 C 1.50699 * 120.02165 * 180.25451 * 8 7 6 10 10 H 1.09002 * 115.54637 * 154.61044 * 9 8 7 11 11 C 1.53001 * 117.50212 * 8.90305 * 9 8 7 12 12 C 1.53001 * 60.00011 * 252.50714 * 11 9 8 13 13 H 1.08997 * 117.51741 * 107.47524 * 12 11 9 14 14 N 1.46501 * 117.50254 * 252.51064 * 12 11 9 15 15 C 1.34777 * 119.99974 * 223.62137 * 14 12 11 16 16 O 1.21280 * 119.99965 * 0.02562 * 15 14 12 17 17 C 1.50700 * 119.99982 * 179.97438 * 15 14 12 18 18 C 1.53003 * 109.47158 * 180.02562 * 17 15 14 19 19 C 1.50697 * 109.46813 * 179.97438 * 18 17 15 20 20 H 1.07998 * 120.00371 * 0.02562 * 19 18 17 21 21 C 1.37882 * 119.99822 * 179.97438 * 19 18 17 22 22 N 1.31509 * 120.00251 * 180.02562 * 21 19 18 23 23 Si 1.86810 * 119.99738 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.46545 * 90.00120 * 23 21 19 25 25 H 1.48499 * 109.46993 * 210.00006 * 23 21 19 26 26 H 1.48493 * 109.47137 * 330.00372 * 23 21 19 27 27 H 1.09002 * 109.47220 * 299.99819 * 1 2 3 28 28 H 1.08996 * 109.47672 * 59.99762 * 1 2 3 29 29 H 1.09006 * 109.47331 * 179.97438 * 1 2 3 30 30 H 1.08000 * 120.03110 * 359.95190 * 4 3 2 31 31 H 1.08000 * 119.97761 * 179.97438 * 5 4 3 32 32 H 1.08001 * 119.94159 * 180.02562 * 6 5 4 33 33 H 1.07997 * 119.97068 * 180.02562 * 7 6 5 34 34 H 1.08999 * 117.49722 * 359.97438 * 11 9 8 35 35 H 1.08996 * 117.49905 * 145.02304 * 11 9 8 36 36 H 0.97000 * 119.99677 * 43.61628 * 14 12 11 37 37 H 1.09009 * 109.47058 * 299.99948 * 17 15 14 38 38 H 1.08993 * 109.47279 * 59.99897 * 17 15 14 39 39 H 1.09004 * 109.46398 * 299.99841 * 18 17 15 40 40 H 1.09001 * 109.47288 * 59.99336 * 18 17 15 41 41 H 0.97001 * 120.00092 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6047 0.0011 6 6 3.3018 3.6758 0.0005 7 6 4.0559 2.5171 0.0000 8 6 3.4310 1.2849 0.0054 9 6 4.2537 0.0222 0.0106 10 1 3.7660 -0.8548 0.4362 11 6 5.7628 0.1631 0.2197 12 6 5.2124 -0.2012 -1.1606 13 1 5.2478 0.5649 -1.9351 14 7 5.4050 -1.5776 -1.6241 15 6 5.7942 -1.8132 -2.8927 16 8 5.9854 -0.8859 -3.6505 17 6 5.9929 -3.2290 -3.3692 18 6 6.4319 -3.2170 -4.8349 19 6 6.6312 -4.6328 -5.3111 20 1 6.4613 -5.4586 -4.6362 21 6 7.0295 -4.8739 -6.6090 22 7 7.2029 -6.1094 -7.0248 23 14 7.3213 -3.4455 -7.7771 24 1 8.7389 -3.0129 -7.6853 25 1 7.0235 -3.8742 -9.1673 26 1 6.4335 -2.3142 -7.4070 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 0.2127 2.3204 0.0002 31 1 1.3339 4.5114 0.0011 32 1 3.7921 4.6381 0.0014 33 1 5.1343 2.5752 0.0000 34 1 6.1606 1.1691 0.3531 35 1 6.2682 -0.6213 0.7830 36 1 5.2525 -2.3192 -1.0178 37 1 6.7606 -3.7117 -2.7643 38 1 5.0567 -3.7790 -3.2746 39 1 5.6645 -2.7342 -5.4400 40 1 7.3683 -2.6670 -4.9292 41 1 7.4834 -6.2790 -7.9378 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598308029.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:34 Heat of formation + Delta-G solvation = -54.965849 kcal Electronic energy + Delta-G solvation = -21854.295092 eV Core-core repulsion = 18506.067112 eV Total energy + Delta-G solvation = -3348.227980 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.41936 -40.67681 -38.88331 -37.72243 -35.54501 -34.30078 -33.20322 -31.36429 -31.05389 -28.21965 -27.99031 -24.90721 -24.02302 -22.94915 -22.34988 -21.53241 -21.15078 -19.30481 -19.00012 -17.81224 -17.53371 -16.88481 -16.61411 -16.57439 -16.48962 -16.21141 -15.37652 -15.16557 -14.96122 -14.66918 -14.52910 -14.45023 -13.75391 -13.70793 -13.41088 -12.98282 -12.92476 -12.88232 -12.47130 -12.27623 -12.11498 -12.00994 -11.97308 -11.85145 -11.76941 -11.46761 -11.40447 -10.81826 -10.78208 -10.04955 -9.58989 -8.98719 -8.31710 -6.34552 0.30359 0.47696 1.33140 1.34897 1.50439 1.61554 2.13011 2.35058 2.39402 2.66815 3.03918 3.12186 3.62226 3.78216 3.85207 3.94966 4.02360 4.11292 4.19584 4.30765 4.37390 4.38309 4.45362 4.49075 4.53472 4.67915 4.72274 4.76082 4.91762 5.02836 5.06653 5.12248 5.33010 5.38417 5.44104 5.49316 5.54825 5.60660 5.61822 5.85749 6.23305 6.45485 6.56072 6.71730 7.28783 7.30892 8.83975 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.022519 B = 0.002948 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.074231 B = 9494.656712 C = 9705.314448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.334 6.334 3 C 0.114 3.886 4 C -0.215 4.215 5 C -0.088 4.088 6 C -0.160 4.160 7 C -0.092 4.092 8 C -0.106 4.106 9 C -0.103 4.103 10 H 0.119 0.881 11 C -0.162 4.162 12 C 0.071 3.929 13 H 0.110 0.890 14 N -0.690 5.690 15 C 0.518 3.482 16 O -0.586 6.586 17 C -0.115 4.115 18 C 0.005 3.995 19 C -0.529 4.529 20 H 0.051 0.949 21 C 0.014 3.986 22 N -0.943 5.943 23 Si 0.938 3.062 24 H -0.267 1.267 25 H -0.277 1.277 26 H -0.263 1.263 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.113 0.887 30 H 0.146 0.854 31 H 0.149 0.851 32 H 0.146 0.854 33 H 0.143 0.857 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.417 0.583 37 H 0.106 0.894 38 H 0.102 0.898 39 H 0.008 0.992 40 H 0.010 0.990 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.862 19.487 21.731 31.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.248 6.248 3 C 0.069 3.931 4 C -0.233 4.233 5 C -0.106 4.106 6 C -0.178 4.178 7 C -0.109 4.109 8 C -0.107 4.107 9 C -0.122 4.122 10 H 0.137 0.863 11 C -0.200 4.200 12 C -0.035 4.035 13 H 0.128 0.872 14 N -0.341 5.341 15 C 0.307 3.693 16 O -0.466 6.466 17 C -0.155 4.155 18 C -0.033 4.033 19 C -0.567 4.567 20 H 0.069 0.931 21 C -0.184 4.184 22 N -0.584 5.584 23 Si 0.763 3.237 24 H -0.192 1.192 25 H -0.203 1.203 26 H -0.188 1.188 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.131 0.869 30 H 0.164 0.836 31 H 0.167 0.833 32 H 0.163 0.837 33 H 0.160 0.840 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.254 0.746 37 H 0.124 0.876 38 H 0.120 0.880 39 H 0.027 0.973 40 H 0.028 0.972 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.608 19.815 21.035 31.529 hybrid contribution -0.178 -0.117 -0.637 0.672 sum -12.787 19.697 20.398 31.105 Atomic orbital electron populations 1.23299 0.76788 1.05313 1.02102 1.86056 1.23112 1.26998 1.88592 1.19066 0.91928 0.85048 0.97067 1.21506 1.01031 0.92139 1.08646 1.21315 0.95024 0.97652 0.96636 1.21378 0.94274 0.98988 1.03201 1.21180 1.01073 0.90987 0.97692 1.18657 0.90389 0.94618 1.06989 1.21270 0.91571 0.97395 1.02008 0.86317 1.23763 0.94179 1.04823 0.97231 1.21716 1.04569 0.85460 0.91788 0.87215 1.45306 1.68666 1.07928 1.12200 1.21247 0.74597 0.92083 0.81408 1.90627 1.52523 1.47386 1.56023 1.21501 1.04377 0.91571 0.98052 1.19223 0.96048 0.94865 0.93164 1.21426 1.45431 0.92486 0.97352 0.93069 1.25801 0.94697 0.97900 1.00005 1.70019 1.48937 1.21036 1.18402 0.85833 0.79491 0.80175 0.78242 1.19243 1.20259 1.18764 0.91259 0.92254 0.86875 0.83648 0.83308 0.83652 0.83975 0.86290 0.86342 0.74553 0.87585 0.87962 0.97337 0.97205 0.92347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.33 -7.09 9.68 -92.48 -0.89 -7.99 16 3 C 0.11 2.46 6.66 22.50 0.15 2.61 16 4 C -0.21 -3.67 9.04 22.37 0.20 -3.47 16 5 C -0.09 -1.32 10.04 22.25 0.22 -1.10 16 6 C -0.16 -2.51 10.04 22.28 0.22 -2.28 16 7 C -0.09 -1.68 9.29 22.25 0.21 -1.47 16 8 C -0.11 -2.29 5.62 -19.77 -0.11 -2.40 16 9 C -0.10 -2.14 5.67 -11.54 -0.07 -2.21 16 10 H 0.12 2.43 7.77 -2.39 -0.02 2.41 16 11 C -0.16 -2.84 9.78 30.59 0.30 -2.54 16 12 C 0.07 1.79 6.06 44.99 0.27 2.06 16 13 H 0.11 3.39 7.40 -2.39 -0.02 3.37 16 14 N -0.69 -18.74 5.57 -442.53 -2.46 -21.20 16 15 C 0.52 19.23 7.83 87.66 0.69 19.91 16 16 O -0.59 -27.00 15.55 -3.03 -0.05 -27.05 16 17 C -0.12 -4.47 5.64 29.85 0.17 -4.30 16 18 C 0.00 0.25 3.33 29.85 0.10 0.35 16 19 C -0.53 -30.95 9.66 25.60 0.25 -30.70 16 20 H 0.05 3.14 7.99 -2.91 -0.02 3.11 16 21 C 0.01 0.82 5.47 84.66 0.46 1.28 16 22 N -0.94 -59.61 13.96 21.45 0.30 -59.31 16 23 Si 0.94 47.44 27.47 68.60 1.88 49.32 16 24 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 25 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 26 H -0.26 -13.33 6.54 99.48 0.65 -12.67 16 27 H 0.07 0.65 7.66 -2.39 -0.02 0.63 16 28 H 0.06 0.69 7.66 -2.39 -0.02 0.68 16 29 H 0.11 1.10 8.14 -2.38 -0.02 1.08 16 30 H 0.15 1.79 6.30 -2.91 -0.02 1.77 16 31 H 0.15 1.37 8.06 -2.91 -0.02 1.34 16 32 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 33 H 0.14 2.13 6.03 -2.91 -0.02 2.11 16 34 H 0.12 1.73 6.18 -2.39 -0.01 1.71 16 35 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.42 8.48 8.83 -92.71 -0.82 7.66 16 37 H 0.11 3.68 8.14 -2.38 -0.02 3.66 16 38 H 0.10 3.62 8.14 -2.39 -0.02 3.60 16 39 H 0.01 0.44 7.16 -2.38 -0.02 0.43 16 40 H 0.01 0.50 7.53 -2.39 -0.02 0.49 16 41 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -77.64 344.42 3.13 -74.52 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: 0.17 Total: 14.59 kcal Atomic # 6 Polarization: -27.06 SS G_CDS: 4.18 Total: -22.88 kcal Atomic # 7 Polarization: -78.35 SS G_CDS: -2.16 Total: -80.51 kcal Atomic # 8 Polarization: -34.09 SS G_CDS: -0.94 Total: -35.03 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 1.88 Total: 49.32 kcal Total: -77.64 3.13 -74.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598308029.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.549 kcal (2) G-P(sol) polarization free energy of solvation -77.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds