Wall clock time and date at job start Tue Mar 31 2020 06:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42900 * 109.46787 * 2 1 4 4 C 1.42898 * 113.99710 * 180.02562 * 3 2 1 5 5 C 1.53007 * 109.47188 * 179.97438 * 4 3 2 6 6 H 1.09003 * 109.50389 * 54.91054 * 5 4 3 7 7 C 1.53090 * 109.50628 * 174.99798 * 5 4 3 8 8 N 1.47014 * 109.25791 * 176.78210 * 7 5 4 9 9 C 1.46905 * 111.00164 * 177.60882 * 8 7 5 10 10 C 1.52995 * 109.47126 * 170.00454 * 9 8 7 11 11 C 1.53000 * 109.47223 * 180.02562 * 10 9 8 12 12 S 1.81005 * 109.47417 * 179.97438 * 11 10 9 13 13 C 1.76189 * 100.00097 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00127 * 0.02562 * 13 12 11 15 15 C 1.38805 * 120.00013 * 180.02562 * 13 12 11 16 16 N 1.31633 * 120.00034 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99929 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47174 * 270.00277 * 17 15 13 19 19 H 1.48501 * 109.47062 * 30.00228 * 17 15 13 20 20 H 1.48490 * 109.46901 * 150.00205 * 17 15 13 21 21 C 1.47012 * 110.75415 * 301.38627 * 8 7 5 22 22 C 1.53094 * 109.25883 * 58.61351 * 21 8 7 23 23 O 1.43013 * 109.50620 * 294.78326 * 5 4 3 24 24 H 1.08998 * 109.46876 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47169 * 299.99877 * 1 2 3 26 26 H 1.09000 * 109.47205 * 60.00314 * 1 2 3 27 27 H 1.09000 * 109.47169 * 240.00123 * 2 1 3 28 28 H 1.09000 * 109.47205 * 119.99686 * 2 1 3 29 29 H 1.08999 * 109.47610 * 59.99692 * 4 3 2 30 30 H 1.09002 * 109.47383 * 299.99985 * 4 3 2 31 31 H 1.09006 * 109.50670 * 56.85199 * 7 5 4 32 32 H 1.09002 * 109.54908 * 296.74317 * 7 5 4 33 33 H 1.08997 * 109.47249 * 49.99826 * 9 8 7 34 34 H 1.09002 * 109.47225 * 290.00165 * 9 8 7 35 35 H 1.08997 * 109.47570 * 59.99568 * 10 9 8 36 36 H 1.09003 * 109.47328 * 299.99782 * 10 9 8 37 37 H 1.09005 * 109.47152 * 59.99562 * 11 10 9 38 38 H 1.09002 * 109.47073 * 299.99677 * 11 10 9 39 39 H 0.97001 * 119.99662 * 179.97438 * 16 15 13 40 40 H 1.09000 * 109.50547 * 178.54816 * 21 8 7 41 41 H 1.09003 * 109.50613 * 298.67665 * 21 8 7 42 42 H 1.08996 * 109.51096 * 183.21417 * 22 21 8 43 43 H 1.09008 * 109.54142 * 63.10762 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.8253 2.9385 -0.0012 6 1 3.3488 3.4427 0.8396 7 6 5.3461 3.0617 0.1240 8 7 5.7258 4.4798 0.0454 9 6 7.1749 4.6473 0.2183 10 6 7.5651 6.0887 -0.1146 11 6 9.0745 6.2630 0.0649 12 16 9.5363 7.9681 -0.3296 13 6 11.2733 7.8881 -0.0459 14 1 11.7261 6.9614 0.2743 15 6 12.0599 9.0163 -0.2338 16 7 13.3576 8.9567 -0.0213 17 14 11.2768 10.6191 -0.7882 18 1 11.2714 10.6801 -2.2719 19 1 9.8814 10.6883 -0.2849 20 1 12.0550 11.7628 -0.2486 21 6 5.2749 5.0702 -1.2233 22 6 3.7548 4.9268 -1.3350 23 8 3.4020 3.5452 -1.2251 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8333 0.9767 -0.8907 30 1 3.8340 0.9765 0.8892 31 1 5.8239 2.5116 -0.6867 32 1 5.6677 2.6514 1.0813 33 1 7.7017 3.9649 -0.4487 34 1 7.4455 4.4269 1.2510 35 1 7.0383 6.7711 0.5525 36 1 7.2946 6.3091 -1.1472 37 1 9.6010 5.5806 -0.6025 38 1 9.3454 6.0425 1.0975 39 1 13.9072 9.7450 -0.1530 40 1 5.5437 6.1262 -1.2491 41 1 5.7515 4.5522 -2.0555 42 1 3.4227 5.3117 -2.2991 43 1 3.2756 5.4896 -0.5338 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599619882.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:13 Heat of formation + Delta-G solvation = -101.438053 kcal Electronic energy + Delta-G solvation = -20608.107518 eV Core-core repulsion = 17393.308303 eV Total energy + Delta-G solvation = -3214.799215 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.01427 -38.17398 -36.46988 -33.10928 -32.55480 -32.44472 -31.03643 -28.51756 -26.38013 -25.62814 -24.15735 -23.13496 -23.03590 -20.99385 -20.29314 -17.54057 -17.07717 -16.97941 -16.56572 -15.88056 -15.53927 -15.31220 -15.02124 -15.00762 -14.53018 -14.16275 -13.93290 -13.60575 -13.47295 -12.88380 -12.85931 -12.42123 -12.26012 -12.18554 -11.83682 -11.75607 -11.64401 -11.41675 -11.25236 -11.07710 -10.94918 -10.76513 -10.43994 -10.19908 -9.94586 -9.85220 -9.69917 -9.02113 -8.58754 -8.51456 -6.96383 -6.29825 -4.02382 2.96612 3.16503 3.28836 3.44238 3.48181 3.55511 3.80598 4.30231 4.62212 4.64914 4.68640 4.76253 4.79820 4.85268 4.89293 4.99221 5.02102 5.02446 5.08801 5.12811 5.23298 5.25065 5.31386 5.37043 5.44242 5.51347 5.54452 5.62906 5.65904 5.74798 5.76383 5.84000 5.95740 6.15063 6.41306 6.56504 6.79752 6.82704 6.86984 7.02147 7.93882 8.42693 9.15956 10.79607 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.055234 B = 0.002327 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.808221 B =12029.291397 C =12415.996744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.380 6.380 4 C 0.072 3.928 5 C 0.097 3.903 6 H 0.075 0.925 7 C 0.026 3.974 8 N -0.534 5.534 9 C 0.060 3.940 10 C -0.104 4.104 11 C -0.082 4.082 12 S -0.215 6.215 13 C -0.503 4.503 14 H 0.088 0.912 15 C 0.091 3.909 16 N -0.881 5.881 17 Si 0.862 3.138 18 H -0.269 1.269 19 H -0.238 1.238 20 H -0.276 1.276 21 C 0.009 3.991 22 C 0.064 3.936 23 O -0.375 6.375 24 H 0.069 0.931 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.048 0.952 28 H 0.047 0.953 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.044 0.956 32 H 0.087 0.913 33 H 0.036 0.964 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.270 0.730 40 H 0.098 0.902 41 H 0.043 0.957 42 H 0.099 0.901 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.855 -16.226 -0.290 28.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.299 6.299 4 C -0.005 4.005 5 C 0.039 3.961 6 H 0.093 0.907 7 C -0.103 4.103 8 N -0.259 5.259 9 C -0.069 4.069 10 C -0.143 4.143 11 C -0.231 4.231 12 S 0.013 5.987 13 C -0.650 4.650 14 H 0.106 0.894 15 C -0.117 4.117 16 N -0.518 5.518 17 Si 0.687 3.313 18 H -0.194 1.194 19 H -0.162 1.162 20 H -0.201 1.201 21 C -0.119 4.119 22 C -0.013 4.013 23 O -0.294 6.294 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.062 0.938 32 H 0.105 0.895 33 H 0.054 0.946 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.116 0.884 41 H 0.062 0.938 42 H 0.117 0.883 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -23.761 -14.943 -0.381 28.071 hybrid contribution 1.662 -0.791 -0.306 1.866 sum -22.099 -15.734 -0.687 27.136 Atomic orbital electron populations 1.21735 0.93680 1.02152 1.03266 1.22467 0.95738 0.83847 0.99978 1.87948 1.20405 1.26204 1.95393 1.22433 0.82097 0.95070 1.00924 1.22057 0.92881 0.92587 0.88588 0.90657 1.22660 0.95408 0.89902 1.02286 1.62254 1.15469 1.14246 1.33979 1.22214 0.85609 0.97379 1.01667 1.21485 0.95018 0.95319 1.02450 1.23008 0.96841 0.99736 1.03534 1.84140 1.12127 1.12077 1.90344 1.22121 0.88399 1.01587 1.52930 0.89426 1.24805 0.94294 0.98755 0.93839 1.69941 1.04231 1.30483 1.47167 0.86662 0.81667 0.82941 0.80026 1.19395 1.16152 1.20085 1.22958 0.96373 1.01977 0.90632 1.22696 0.93517 0.82600 1.02466 1.88024 1.79230 1.24179 1.37976 0.91163 0.91842 0.91742 0.93416 0.93480 0.92514 0.91700 0.93769 0.89453 0.94565 0.90239 0.90504 0.91284 0.91595 0.91259 0.91971 0.88365 0.93824 0.88342 0.92183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 10.28 37.16 0.38 -0.57 16 2 C 0.06 0.42 6.66 37.16 0.25 0.66 16 3 O -0.38 -3.99 10.31 -39.72 -0.41 -4.40 16 4 C 0.07 0.65 5.60 37.16 0.21 0.85 16 5 C 0.10 1.02 3.09 -26.68 -0.08 0.93 16 6 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 7 C 0.03 0.27 4.91 -3.72 -0.02 0.25 16 8 N -0.53 -6.33 4.88 -234.31 -1.14 -7.48 16 9 C 0.06 0.76 5.28 -3.82 -0.02 0.74 16 10 C -0.10 -1.57 4.49 -26.73 -0.12 -1.69 16 11 C -0.08 -1.57 5.67 37.16 0.21 -1.36 16 12 S -0.21 -5.20 19.41 -107.50 -2.09 -7.29 16 13 C -0.50 -14.59 10.04 30.94 0.31 -14.28 16 14 H 0.09 2.70 8.03 -52.49 -0.42 2.28 16 15 C 0.09 2.67 5.50 -17.43 -0.10 2.58 16 16 N -0.88 -26.73 13.97 55.49 0.78 -25.96 16 17 Si 0.86 21.53 27.74 -169.99 -4.72 16.81 16 18 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 19 H -0.24 -5.81 6.74 56.52 0.38 -5.43 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 C 0.01 0.10 4.94 -3.71 -0.02 0.08 16 22 C 0.06 0.68 7.01 37.21 0.26 0.94 16 23 O -0.38 -4.59 10.44 -39.72 -0.41 -5.01 16 24 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.04 0.46 8.08 -51.93 -0.42 0.04 16 34 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.07 1.02 6.28 -51.93 -0.33 0.70 16 37 H 0.07 1.26 8.14 -51.91 -0.42 0.84 16 38 H 0.07 1.33 8.14 -51.92 -0.42 0.90 16 39 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 40 H 0.10 1.12 6.05 -51.93 -0.31 0.80 16 41 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.06 0.63 8.14 -51.92 -0.42 0.20 16 LS Contribution 356.32 15.07 5.37 5.37 Total: -1.00 -32.13 356.32 -9.18 -41.31 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -7.82 Total: -2.50 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: 1.27 Total: -10.86 kcal Atomic # 7 Polarization: -33.07 SS G_CDS: -0.37 Total: -33.43 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: -0.82 Total: -9.41 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.72 Total: 16.81 kcal Atomic # 16 Polarization: -5.20 SS G_CDS: -2.09 Total: -7.29 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.13 -9.18 -41.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599619882.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.126 kcal (2) G-P(sol) polarization free energy of solvation -32.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds