Wall clock time and date at job start Tue Mar 31 2020 06:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42900 * 109.46787 * 2 1 4 4 C 1.42898 * 113.99710 * 180.02562 * 3 2 1 5 5 C 1.53007 * 109.47188 * 179.97438 * 4 3 2 6 6 H 1.09003 * 109.50389 * 54.91054 * 5 4 3 7 7 C 1.53090 * 109.50628 * 174.99798 * 5 4 3 8 8 N 1.47014 * 109.25791 * 176.78210 * 7 5 4 9 9 C 1.46905 * 111.00164 * 177.60882 * 8 7 5 10 10 C 1.52995 * 109.47126 * 170.00454 * 9 8 7 11 11 C 1.53000 * 109.47223 * 180.02562 * 10 9 8 12 12 S 1.81005 * 109.47417 * 179.97438 * 11 10 9 13 13 C 1.76189 * 100.00097 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00127 * 0.02562 * 13 12 11 15 15 C 1.38805 * 120.00013 * 180.02562 * 13 12 11 16 16 N 1.31633 * 120.00034 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99929 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47174 * 270.00277 * 17 15 13 19 19 H 1.48501 * 109.47062 * 30.00228 * 17 15 13 20 20 H 1.48490 * 109.46901 * 150.00205 * 17 15 13 21 21 C 1.47012 * 110.75415 * 301.38627 * 8 7 5 22 22 C 1.53094 * 109.25883 * 58.61351 * 21 8 7 23 23 O 1.43013 * 109.50620 * 294.78326 * 5 4 3 24 24 H 1.08998 * 109.46876 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47169 * 299.99877 * 1 2 3 26 26 H 1.09000 * 109.47205 * 60.00314 * 1 2 3 27 27 H 1.09000 * 109.47169 * 240.00123 * 2 1 3 28 28 H 1.09000 * 109.47205 * 119.99686 * 2 1 3 29 29 H 1.08999 * 109.47610 * 59.99692 * 4 3 2 30 30 H 1.09002 * 109.47383 * 299.99985 * 4 3 2 31 31 H 1.09006 * 109.50670 * 56.85199 * 7 5 4 32 32 H 1.09002 * 109.54908 * 296.74317 * 7 5 4 33 33 H 1.08997 * 109.47249 * 49.99826 * 9 8 7 34 34 H 1.09002 * 109.47225 * 290.00165 * 9 8 7 35 35 H 1.08997 * 109.47570 * 59.99568 * 10 9 8 36 36 H 1.09003 * 109.47328 * 299.99782 * 10 9 8 37 37 H 1.09005 * 109.47152 * 59.99562 * 11 10 9 38 38 H 1.09002 * 109.47073 * 299.99677 * 11 10 9 39 39 H 0.97001 * 119.99662 * 179.97438 * 16 15 13 40 40 H 1.09000 * 109.50547 * 178.54816 * 21 8 7 41 41 H 1.09003 * 109.50613 * 298.67665 * 21 8 7 42 42 H 1.08996 * 109.51096 * 183.21417 * 22 21 8 43 43 H 1.09008 * 109.54142 * 63.10762 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.8253 2.9385 -0.0012 6 1 3.3488 3.4427 0.8396 7 6 5.3461 3.0617 0.1240 8 7 5.7258 4.4798 0.0454 9 6 7.1749 4.6473 0.2183 10 6 7.5651 6.0887 -0.1146 11 6 9.0745 6.2630 0.0649 12 16 9.5363 7.9681 -0.3296 13 6 11.2733 7.8881 -0.0459 14 1 11.7261 6.9614 0.2743 15 6 12.0599 9.0163 -0.2338 16 7 13.3576 8.9567 -0.0213 17 14 11.2768 10.6191 -0.7882 18 1 11.2714 10.6801 -2.2719 19 1 9.8814 10.6883 -0.2849 20 1 12.0550 11.7628 -0.2486 21 6 5.2749 5.0702 -1.2233 22 6 3.7548 4.9268 -1.3350 23 8 3.4020 3.5452 -1.2251 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8333 0.9767 -0.8907 30 1 3.8340 0.9765 0.8892 31 1 5.8239 2.5116 -0.6867 32 1 5.6677 2.6514 1.0813 33 1 7.7017 3.9649 -0.4487 34 1 7.4455 4.4269 1.2510 35 1 7.0383 6.7711 0.5525 36 1 7.2946 6.3091 -1.1472 37 1 9.6010 5.5806 -0.6025 38 1 9.3454 6.0425 1.0975 39 1 13.9072 9.7450 -0.1530 40 1 5.5437 6.1262 -1.2491 41 1 5.7515 4.5522 -2.0555 42 1 3.4227 5.3117 -2.2991 43 1 3.2756 5.4896 -0.5338 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599619882.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:12 Heat of formation + Delta-G solvation = -123.488981 kcal Electronic energy + Delta-G solvation = -20609.063718 eV Core-core repulsion = 17393.308303 eV Total energy + Delta-G solvation = -3215.755415 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.86456 -38.87562 -37.44035 -34.69431 -34.12903 -33.43733 -31.67877 -29.46360 -28.02238 -27.19474 -25.09602 -24.06021 -23.65429 -21.99933 -21.25476 -19.63217 -17.84011 -17.67523 -17.51992 -17.10170 -16.69563 -16.49254 -16.16659 -16.06078 -15.86224 -15.25131 -15.05306 -14.84766 -14.47308 -14.15516 -13.75907 -13.57160 -13.42164 -13.34858 -13.06498 -13.00481 -12.73702 -12.43763 -12.30250 -12.25040 -12.04958 -11.93752 -11.77073 -11.68783 -11.39142 -11.16853 -10.67278 -10.57090 -10.53958 -9.43284 -8.99829 -8.52642 -6.24017 1.12011 1.31676 1.47463 1.72817 2.24218 2.45637 2.67685 2.71166 2.85385 2.96589 3.84383 3.87614 3.93351 3.99629 4.03535 4.12714 4.17793 4.19226 4.26150 4.36936 4.40854 4.45782 4.50643 4.50898 4.51864 4.60947 4.65774 4.78062 4.80089 4.87387 4.95184 4.98332 5.04890 5.13233 5.21304 5.27862 5.68815 5.88759 5.91121 6.09245 6.15257 6.29176 6.91348 8.60346 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.055234 B = 0.002327 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.808221 B =12029.291397 C =12415.996744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.049 3.951 3 O -0.408 6.408 4 C 0.072 3.928 5 C 0.096 3.904 6 H 0.067 0.933 7 C 0.029 3.971 8 N -0.541 5.541 9 C 0.069 3.931 10 C -0.091 4.091 11 C -0.070 4.070 12 S -0.218 6.218 13 C -0.524 4.524 14 H 0.050 0.950 15 C 0.037 3.963 16 N -0.922 5.922 17 Si 0.926 3.074 18 H -0.261 1.261 19 H -0.228 1.228 20 H -0.263 1.263 21 C 0.009 3.991 22 C 0.065 3.935 23 O -0.394 6.394 24 H 0.091 0.909 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.088 0.912 31 H 0.044 0.956 32 H 0.104 0.896 33 H 0.038 0.962 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.277 0.723 40 H 0.097 0.903 41 H 0.039 0.961 42 H 0.113 0.887 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.620 -16.569 -0.401 29.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 O -0.328 6.328 4 C -0.004 4.004 5 C 0.038 3.962 6 H 0.085 0.915 7 C -0.099 4.099 8 N -0.266 5.266 9 C -0.060 4.060 10 C -0.130 4.130 11 C -0.219 4.219 12 S 0.010 5.990 13 C -0.671 4.671 14 H 0.068 0.932 15 C -0.168 4.168 16 N -0.560 5.560 17 Si 0.747 3.253 18 H -0.186 1.186 19 H -0.152 1.152 20 H -0.188 1.188 21 C -0.119 4.119 22 C -0.012 4.012 23 O -0.313 6.313 24 H 0.109 0.891 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.106 0.894 31 H 0.063 0.937 32 H 0.122 0.878 33 H 0.057 0.943 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.115 0.885 41 H 0.057 0.943 42 H 0.131 0.869 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -25.531 -15.303 -0.488 29.770 hybrid contribution 2.189 -0.828 -0.241 2.353 sum -23.343 -16.131 -0.728 28.383 Atomic orbital electron populations 1.21763 0.93131 1.03321 1.02529 1.22671 0.96282 0.82764 1.00965 1.87909 1.21157 1.28091 1.95607 1.22490 0.81747 0.94139 1.02072 1.22140 0.92901 0.93432 0.87705 0.91455 1.22693 0.95204 0.88837 1.03210 1.62254 1.14580 1.15513 1.34286 1.22061 0.86393 0.95433 1.02127 1.21365 0.91676 0.97148 1.02793 1.23068 0.99637 0.95897 1.03275 1.83823 1.08101 1.16593 1.90514 1.22351 0.91588 1.00405 1.52790 0.93162 1.25800 0.94789 1.02448 0.93746 1.70042 1.05800 1.31924 1.48223 0.85700 0.81199 0.78489 0.79874 1.18607 1.15165 1.18776 1.22959 0.96879 1.01761 0.90274 1.22767 0.92953 0.82131 1.03344 1.88008 1.79567 1.24893 1.38872 0.89060 0.92294 0.92731 0.92838 0.92003 0.92386 0.89424 0.93738 0.87777 0.94325 0.89548 0.90565 0.90841 0.91790 0.91377 0.91410 0.88479 0.94301 0.86867 0.92204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 10.28 71.98 0.74 -0.96 16 2 C 0.05 0.65 6.66 71.98 0.48 1.13 16 3 O -0.41 -8.08 10.31 -144.68 -1.49 -9.57 16 4 C 0.07 1.18 5.60 71.98 0.40 1.58 16 5 C 0.10 1.87 3.09 30.63 0.09 1.97 16 6 H 0.07 1.40 8.14 -2.39 -0.02 1.39 16 7 C 0.03 0.53 4.91 86.31 0.42 0.95 16 8 N -0.54 -11.75 4.88 -895.23 -4.37 -16.12 16 9 C 0.07 1.60 5.28 86.30 0.46 2.06 16 10 C -0.09 -2.57 4.49 30.59 0.14 -2.44 16 11 C -0.07 -2.60 5.67 71.98 0.41 -2.19 16 12 S -0.22 -10.41 19.41 -56.49 -1.10 -11.51 16 13 C -0.52 -30.91 10.04 67.96 0.68 -30.23 16 14 H 0.05 3.23 8.03 -2.91 -0.02 3.20 16 15 C 0.04 2.17 5.50 84.86 0.47 2.64 16 16 N -0.92 -56.81 13.97 21.65 0.30 -56.50 16 17 Si 0.93 44.06 27.74 68.60 1.90 45.96 16 18 H -0.26 -12.05 7.11 99.48 0.71 -11.35 16 19 H -0.23 -10.44 6.74 99.48 0.67 -9.77 16 20 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 21 C 0.01 0.19 4.94 86.31 0.43 0.62 16 22 C 0.06 1.28 7.01 72.01 0.50 1.78 16 23 O -0.39 -9.19 10.44 -144.68 -1.51 -10.70 16 24 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.04 0.89 8.08 -2.39 -0.02 0.87 16 34 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.07 2.04 6.28 -2.39 -0.01 2.02 16 37 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 39 H 0.28 15.69 8.31 -92.71 -0.77 14.92 16 40 H 0.10 2.04 6.05 -2.39 -0.01 2.03 16 41 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 Total: -1.00 -69.05 356.32 -0.13 -69.17 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: 0.91 Total: 12.36 kcal Atomic # 6 Polarization: -28.31 SS G_CDS: 5.22 Total: -23.09 kcal Atomic # 7 Polarization: -68.56 SS G_CDS: -4.06 Total: -72.62 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -3.00 Total: -20.27 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.90 Total: 45.96 kcal Atomic # 16 Polarization: -10.41 SS G_CDS: -1.10 Total: -11.51 kcal Total: -69.05 -0.13 -69.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599619882.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.318 kcal (2) G-P(sol) polarization free energy of solvation -69.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds