Wall clock time and date at job start Tue Mar 31 2020 06:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42893 * 109.47301 * 2 1 4 4 C 1.42904 * 114.00207 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47161 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.54474 * 305.11187 * 5 4 3 7 7 C 1.53103 * 109.50526 * 184.99932 * 5 4 3 8 8 N 1.47016 * 109.29298 * 183.24310 * 7 5 4 9 9 C 1.46894 * 110.99844 * 182.37346 * 8 7 5 10 10 C 1.53005 * 109.47265 * 189.99589 * 9 8 7 11 11 C 1.52994 * 109.47222 * 179.97438 * 10 9 8 12 12 S 1.81007 * 109.47138 * 179.97438 * 11 10 9 13 13 C 1.76198 * 100.00134 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99879 * 0.02562 * 13 12 11 15 15 C 1.38800 * 119.99977 * 179.97438 * 13 12 11 16 16 N 1.31631 * 119.99940 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99911 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46612 * 90.00441 * 17 15 13 19 19 H 1.48496 * 109.47228 * 210.00244 * 17 15 13 20 20 H 1.48501 * 109.47060 * 330.00818 * 17 15 13 21 21 C 1.47009 * 110.75376 * 58.59374 * 8 7 5 22 22 C 1.53093 * 109.26071 * 301.38357 * 21 8 7 23 23 O 1.43015 * 109.25965 * 56.84798 * 22 21 8 24 24 H 1.08999 * 109.47247 * 59.99882 * 1 2 3 25 25 H 1.09000 * 109.47447 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47540 * 299.99934 * 1 2 3 27 27 H 1.08999 * 109.47104 * 239.99756 * 2 1 3 28 28 H 1.09004 * 109.46564 * 119.99992 * 2 1 3 29 29 H 1.09000 * 109.46940 * 59.99881 * 4 3 2 30 30 H 1.08998 * 109.46887 * 300.00495 * 4 3 2 31 31 H 1.09002 * 109.50635 * 63.28401 * 7 5 4 32 32 H 1.09003 * 109.50698 * 303.20013 * 7 5 4 33 33 H 1.09003 * 109.47484 * 309.99878 * 9 8 7 34 34 H 1.09003 * 109.47557 * 69.99843 * 9 8 7 35 35 H 1.08995 * 109.46775 * 299.99978 * 10 9 8 36 36 H 1.09003 * 109.46625 * 59.99684 * 10 9 8 37 37 H 1.08994 * 109.47827 * 300.00428 * 11 10 9 38 38 H 1.09003 * 109.47201 * 60.00499 * 11 10 9 39 39 H 0.96999 * 119.99425 * 179.97438 * 16 15 13 40 40 H 1.09001 * 109.50528 * 61.32115 * 21 8 7 41 41 H 1.09005 * 109.50420 * 181.40891 * 21 8 7 42 42 H 1.08994 * 109.50954 * 176.78275 * 22 21 8 43 43 H 1.09003 * 109.50868 * 296.87479 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8254 2.9382 -0.0001 6 1 3.3490 3.4424 -0.8409 7 6 5.3463 3.0614 -0.1253 8 7 5.7269 4.4793 -0.0473 9 6 7.1762 4.6455 -0.2199 10 6 7.5673 6.0870 0.1123 11 6 9.0769 6.2600 -0.0669 12 16 9.5395 7.9654 0.3254 13 6 11.2767 7.8840 0.0425 14 1 11.7289 6.9567 -0.2769 15 6 12.0638 9.0119 0.2291 16 7 11.5125 10.1422 0.6178 17 14 13.9057 8.9254 -0.0701 18 1 14.1933 9.2637 -1.4872 19 1 14.5977 9.8919 0.8198 20 1 14.3902 7.5517 0.2190 21 6 5.2760 5.0707 1.2208 22 6 3.7557 4.9285 1.3320 23 8 3.4020 3.5471 1.2229 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8932 -0.5139 0.8900 29 1 3.8340 0.9763 -0.8892 30 1 3.8332 0.9766 0.8908 31 1 5.6672 2.6504 -1.0825 32 1 5.8240 2.5112 0.6855 33 1 7.7023 3.9632 0.4478 34 1 7.4469 4.4244 -1.2523 35 1 7.0413 6.7692 -0.5555 36 1 7.2965 6.3081 1.1447 37 1 9.6026 5.5777 0.6010 38 1 9.3480 6.0387 -1.0992 39 1 12.0627 10.9303 0.7486 40 1 5.7519 4.5529 2.0535 41 1 5.5462 6.1264 1.2464 42 1 3.4236 5.3142 2.2958 43 1 3.2778 5.4916 0.5303 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599619893.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:16 Heat of formation + Delta-G solvation = -101.862213 kcal Electronic energy + Delta-G solvation = -20562.529389 eV Core-core repulsion = 17347.711781 eV Total energy + Delta-G solvation = -3214.817608 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.96156 -38.14425 -36.40018 -33.04744 -32.51765 -32.37859 -31.00315 -28.45174 -26.33045 -25.49553 -24.07777 -23.10546 -22.95558 -20.92244 -20.22027 -17.51828 -17.04843 -16.94709 -16.51800 -15.84531 -15.46290 -15.27081 -14.94340 -14.81635 -14.51197 -14.08403 -13.87955 -13.58924 -13.47286 -12.91366 -12.85453 -12.30474 -12.12786 -11.95080 -11.79464 -11.65259 -11.60906 -11.27008 -11.11265 -11.05988 -10.83050 -10.68827 -10.62238 -10.32255 -9.92383 -9.77312 -9.51151 -9.06796 -8.45398 -8.31923 -6.54117 -6.23794 -3.94177 3.15122 3.21078 3.22793 3.28462 3.51149 3.56283 3.86284 4.21439 4.65481 4.68394 4.71543 4.82707 4.90079 4.91885 5.01475 5.04656 5.07825 5.12231 5.17756 5.25536 5.31446 5.33828 5.38162 5.41589 5.54990 5.56479 5.64171 5.68868 5.73762 5.77704 5.83200 5.92046 6.07186 6.27605 6.53575 6.68210 6.85140 6.88017 6.92974 7.06779 7.59588 8.35640 9.22523 10.84398 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.056773 B = 0.002229 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.072427 B =12558.871440 C =12928.216916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.380 6.380 4 C 0.072 3.928 5 C 0.097 3.903 6 H 0.075 0.925 7 C 0.026 3.974 8 N -0.535 5.535 9 C 0.060 3.940 10 C -0.101 4.101 11 C -0.113 4.113 12 S -0.132 6.132 13 C -0.517 4.517 14 H 0.072 0.928 15 C 0.071 3.929 16 N -0.869 5.869 17 Si 0.919 3.081 18 H -0.277 1.277 19 H -0.282 1.282 20 H -0.272 1.272 21 C 0.009 3.991 22 C 0.064 3.936 23 O -0.376 6.376 24 H 0.062 0.938 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.086 0.914 32 H 0.043 0.957 33 H 0.034 0.966 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.267 0.733 40 H 0.043 0.957 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.192 -18.635 -0.978 26.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.299 6.299 4 C -0.005 4.005 5 C 0.039 3.961 6 H 0.093 0.907 7 C -0.102 4.102 8 N -0.259 5.259 9 C -0.068 4.068 10 C -0.139 4.139 11 C -0.262 4.262 12 S 0.096 5.904 13 C -0.665 4.665 14 H 0.090 0.910 15 C -0.138 4.138 16 N -0.505 5.505 17 Si 0.745 3.255 18 H -0.203 1.203 19 H -0.207 1.207 20 H -0.197 1.197 21 C -0.119 4.119 22 C -0.013 4.013 23 O -0.295 6.295 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.105 0.895 32 H 0.062 0.938 33 H 0.052 0.948 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.061 0.939 41 H 0.118 0.882 42 H 0.117 0.883 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.250 -17.253 -0.830 25.863 hybrid contribution 2.823 -1.560 -0.121 3.228 sum -16.427 -18.812 -0.951 24.993 Atomic orbital electron populations 1.21733 0.93686 1.02135 1.03278 1.22462 0.95736 0.83876 0.99954 1.87949 1.20422 1.26173 1.95387 1.22430 0.82071 0.95107 1.00887 1.22057 0.92900 0.92522 0.88633 0.90671 1.22657 0.95383 0.90022 1.02187 1.62250 1.15542 1.14102 1.34055 1.22235 0.85474 0.97681 1.01456 1.21428 0.95209 0.94935 1.02346 1.23225 0.96886 1.03201 1.02883 1.84615 1.09883 1.06610 1.89265 1.22689 0.91363 0.99543 1.52901 0.90972 1.25019 0.99523 0.94611 0.94658 1.70023 1.36067 1.00659 1.43746 0.86163 0.82910 0.78115 0.78316 1.20253 1.20742 1.19721 1.22960 0.96304 1.02089 0.90585 1.22699 0.93557 0.82528 1.02486 1.88018 1.79184 1.24224 1.38036 0.91841 0.91179 0.91734 0.93505 0.93432 0.91739 0.92524 0.89543 0.93843 0.94751 0.90422 0.90612 0.91369 0.92322 0.92033 0.92298 0.93875 0.88239 0.88316 0.92165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 10.28 37.16 0.38 -0.59 16 2 C 0.06 0.43 6.66 37.16 0.25 0.67 16 3 O -0.38 -4.09 10.31 -39.67 -0.41 -4.50 16 4 C 0.07 0.67 5.61 37.15 0.21 0.88 16 5 C 0.10 1.06 3.09 -26.68 -0.08 0.97 16 6 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 7 C 0.03 0.28 4.91 -3.71 -0.02 0.26 16 8 N -0.53 -6.68 4.88 -234.30 -1.14 -7.82 16 9 C 0.06 0.81 5.28 -3.82 -0.02 0.79 16 10 C -0.10 -1.62 4.49 -26.73 -0.12 -1.74 16 11 C -0.11 -2.26 5.67 37.15 0.21 -2.05 16 12 S -0.13 -3.45 21.44 -107.50 -2.30 -5.75 16 13 C -0.52 -14.85 9.50 30.94 0.29 -14.56 16 14 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 15 C 0.07 2.02 5.49 -17.43 -0.10 1.92 16 16 N -0.87 -26.00 13.22 55.49 0.73 -25.27 16 17 Si 0.92 21.55 29.55 -169.99 -5.02 16.53 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 21 C 0.01 0.10 4.94 -3.72 -0.02 0.08 16 22 C 0.06 0.71 7.01 37.21 0.26 0.97 16 23 O -0.38 -4.76 10.44 -39.67 -0.41 -5.18 16 24 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.03 0.46 8.08 -51.93 -0.42 0.04 16 34 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 36 H 0.07 1.10 6.28 -51.93 -0.33 0.77 16 37 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 38 H 0.06 1.22 8.14 -51.91 -0.42 0.80 16 39 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 40 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.10 1.22 6.05 -51.93 -0.31 0.91 16 42 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 359.01 15.07 5.41 5.41 Total: -1.00 -32.25 359.01 -9.69 -41.94 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -7.79 Total: -2.98 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: 1.25 Total: -12.39 kcal Atomic # 7 Polarization: -32.68 SS G_CDS: -0.41 Total: -33.09 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: -0.82 Total: -9.67 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -3.45 SS G_CDS: -2.30 Total: -5.75 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.25 -9.69 -41.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599619893.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.921 kcal (2) G-P(sol) polarization free energy of solvation -32.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds