Wall clock time and date at job start Tue Mar 31 2020 06:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42893 * 109.47301 * 2 1 4 4 C 1.42904 * 114.00207 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47161 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.54474 * 305.11187 * 5 4 3 7 7 C 1.53103 * 109.50526 * 184.99932 * 5 4 3 8 8 N 1.47016 * 109.29298 * 183.24310 * 7 5 4 9 9 C 1.46894 * 110.99844 * 182.37346 * 8 7 5 10 10 C 1.53005 * 109.47265 * 189.99589 * 9 8 7 11 11 C 1.52994 * 109.47222 * 179.97438 * 10 9 8 12 12 S 1.81007 * 109.47138 * 179.97438 * 11 10 9 13 13 C 1.76198 * 100.00134 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99879 * 0.02562 * 13 12 11 15 15 C 1.38800 * 119.99977 * 179.97438 * 13 12 11 16 16 N 1.31631 * 119.99940 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99911 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46612 * 90.00441 * 17 15 13 19 19 H 1.48496 * 109.47228 * 210.00244 * 17 15 13 20 20 H 1.48501 * 109.47060 * 330.00818 * 17 15 13 21 21 C 1.47009 * 110.75376 * 58.59374 * 8 7 5 22 22 C 1.53093 * 109.26071 * 301.38357 * 21 8 7 23 23 O 1.43015 * 109.25965 * 56.84798 * 22 21 8 24 24 H 1.08999 * 109.47247 * 59.99882 * 1 2 3 25 25 H 1.09000 * 109.47447 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47540 * 299.99934 * 1 2 3 27 27 H 1.08999 * 109.47104 * 239.99756 * 2 1 3 28 28 H 1.09004 * 109.46564 * 119.99992 * 2 1 3 29 29 H 1.09000 * 109.46940 * 59.99881 * 4 3 2 30 30 H 1.08998 * 109.46887 * 300.00495 * 4 3 2 31 31 H 1.09002 * 109.50635 * 63.28401 * 7 5 4 32 32 H 1.09003 * 109.50698 * 303.20013 * 7 5 4 33 33 H 1.09003 * 109.47484 * 309.99878 * 9 8 7 34 34 H 1.09003 * 109.47557 * 69.99843 * 9 8 7 35 35 H 1.08995 * 109.46775 * 299.99978 * 10 9 8 36 36 H 1.09003 * 109.46625 * 59.99684 * 10 9 8 37 37 H 1.08994 * 109.47827 * 300.00428 * 11 10 9 38 38 H 1.09003 * 109.47201 * 60.00499 * 11 10 9 39 39 H 0.96999 * 119.99425 * 179.97438 * 16 15 13 40 40 H 1.09001 * 109.50528 * 61.32115 * 21 8 7 41 41 H 1.09005 * 109.50420 * 181.40891 * 21 8 7 42 42 H 1.08994 * 109.50954 * 176.78275 * 22 21 8 43 43 H 1.09003 * 109.50868 * 296.87479 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8254 2.9382 -0.0001 6 1 3.3490 3.4424 -0.8409 7 6 5.3463 3.0614 -0.1253 8 7 5.7269 4.4793 -0.0473 9 6 7.1762 4.6455 -0.2199 10 6 7.5673 6.0870 0.1123 11 6 9.0769 6.2600 -0.0669 12 16 9.5395 7.9654 0.3254 13 6 11.2767 7.8840 0.0425 14 1 11.7289 6.9567 -0.2769 15 6 12.0638 9.0119 0.2291 16 7 11.5125 10.1422 0.6178 17 14 13.9057 8.9254 -0.0701 18 1 14.1933 9.2637 -1.4872 19 1 14.5977 9.8919 0.8198 20 1 14.3902 7.5517 0.2190 21 6 5.2760 5.0707 1.2208 22 6 3.7557 4.9285 1.3320 23 8 3.4020 3.5471 1.2229 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8932 -0.5139 0.8900 29 1 3.8340 0.9763 -0.8892 30 1 3.8332 0.9766 0.8908 31 1 5.6672 2.6504 -1.0825 32 1 5.8240 2.5112 0.6855 33 1 7.7023 3.9632 0.4478 34 1 7.4469 4.4244 -1.2523 35 1 7.0413 6.7692 -0.5555 36 1 7.2965 6.3081 1.1447 37 1 9.6026 5.5777 0.6010 38 1 9.3480 6.0387 -1.0992 39 1 12.0627 10.9303 0.7486 40 1 5.7519 4.5529 2.0535 41 1 5.5462 6.1264 1.2464 42 1 3.4236 5.3142 2.2958 43 1 3.2778 5.4916 0.5303 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599619893.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:15 Heat of formation + Delta-G solvation = -123.529967 kcal Electronic energy + Delta-G solvation = -20563.468973 eV Core-core repulsion = 17347.711781 eV Total energy + Delta-G solvation = -3215.757192 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.86241 -38.87257 -37.42883 -34.62340 -34.08523 -33.42507 -31.67758 -29.45452 -27.90927 -27.10073 -25.07936 -24.03331 -23.65066 -21.98356 -21.25267 -19.57052 -17.83721 -17.67225 -17.51038 -16.90207 -16.67817 -16.48405 -16.17869 -16.05826 -15.89834 -15.25149 -15.02012 -14.75006 -14.38311 -14.14402 -13.58911 -13.48252 -13.34359 -13.18901 -13.04354 -12.92436 -12.66963 -12.48820 -12.39582 -12.24861 -12.16972 -11.94145 -11.73168 -11.54107 -11.32223 -11.14822 -10.65100 -10.56343 -10.31905 -9.42928 -8.67332 -8.38102 -6.14372 1.30875 1.38960 1.48187 1.72748 2.27208 2.46525 2.70465 2.96180 2.96440 3.31117 3.85647 3.88013 3.94140 4.00806 4.03963 4.14109 4.18902 4.20948 4.29099 4.37715 4.41840 4.46734 4.51023 4.51476 4.52745 4.60762 4.67883 4.79405 4.80173 4.87558 4.95606 4.98382 5.05167 5.15343 5.24279 5.28143 5.39080 5.88619 5.92366 6.14960 6.17369 6.29549 7.04177 8.71254 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.056773 B = 0.002229 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.072427 B =12558.871440 C =12928.216916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.049 3.951 3 O -0.408 6.408 4 C 0.073 3.927 5 C 0.096 3.904 6 H 0.067 0.933 7 C 0.029 3.971 8 N -0.542 5.542 9 C 0.071 3.929 10 C -0.089 4.089 11 C -0.088 4.088 12 S -0.197 6.197 13 C -0.539 4.539 14 H 0.073 0.927 15 C 0.015 3.985 16 N -0.907 5.907 17 Si 0.994 3.006 18 H -0.267 1.267 19 H -0.274 1.274 20 H -0.263 1.263 21 C 0.010 3.990 22 C 0.066 3.934 23 O -0.394 6.394 24 H 0.058 0.942 25 H 0.091 0.909 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.089 0.911 30 H 0.058 0.942 31 H 0.105 0.895 32 H 0.045 0.955 33 H 0.039 0.961 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.271 0.729 40 H 0.039 0.961 41 H 0.093 0.907 42 H 0.113 0.887 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.822 -20.518 -1.583 27.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.027 4.027 3 O -0.328 6.328 4 C -0.004 4.004 5 C 0.037 3.963 6 H 0.085 0.915 7 C -0.099 4.099 8 N -0.267 5.267 9 C -0.058 4.058 10 C -0.127 4.127 11 C -0.237 4.237 12 S 0.032 5.968 13 C -0.687 4.687 14 H 0.091 0.909 15 C -0.190 4.190 16 N -0.543 5.543 17 Si 0.816 3.184 18 H -0.193 1.193 19 H -0.199 1.199 20 H -0.187 1.187 21 C -0.118 4.118 22 C -0.011 4.011 23 O -0.313 6.313 24 H 0.077 0.923 25 H 0.110 0.890 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.107 0.893 30 H 0.077 0.923 31 H 0.123 0.877 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.105 0.895 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.057 0.943 41 H 0.111 0.889 42 H 0.131 0.869 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -18.896 -19.148 -1.437 26.940 hybrid contribution 2.602 -1.029 0.066 2.799 sum -16.294 -20.177 -1.372 25.971 Atomic orbital electron populations 1.21763 0.93151 1.03325 1.02516 1.22670 0.96270 0.82754 1.00983 1.87911 1.21165 1.28119 1.95610 1.22482 0.81745 0.94023 1.02117 1.22159 0.92919 0.93479 0.87695 0.91508 1.22697 0.95203 0.88753 1.03249 1.62244 1.14662 1.15579 1.34262 1.22062 0.86311 0.95359 1.02073 1.21304 0.92219 0.96968 1.02234 1.23146 0.99383 0.98337 1.02865 1.84627 1.09749 1.12618 1.89805 1.23049 0.92461 0.99940 1.53260 0.90890 1.26077 1.04929 0.94021 0.93998 1.70156 1.38132 1.01476 1.44573 0.85012 0.76203 0.78585 0.78583 1.19255 1.19918 1.18731 1.22939 0.96944 1.01608 0.90339 1.22749 0.92852 0.82183 1.03322 1.88003 1.79501 1.24788 1.38996 0.92312 0.89029 0.92760 0.91966 0.92821 0.89348 0.92330 0.87681 0.93689 0.94270 0.89486 0.91269 0.91478 0.92066 0.91679 0.91960 0.94314 0.88867 0.86883 0.92249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 10.28 71.98 0.74 -1.02 16 2 C 0.05 0.67 6.66 71.98 0.48 1.15 16 3 O -0.41 -8.30 10.31 -144.74 -1.49 -9.80 16 4 C 0.07 1.23 5.61 71.98 0.40 1.63 16 5 C 0.10 1.95 3.09 30.63 0.09 2.04 16 6 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 7 C 0.03 0.56 4.91 86.32 0.42 0.98 16 8 N -0.54 -12.71 4.88 -895.20 -4.37 -17.08 16 9 C 0.07 1.77 5.28 86.31 0.46 2.23 16 10 C -0.09 -2.78 4.49 30.59 0.14 -2.65 16 11 C -0.09 -3.48 5.67 71.98 0.41 -3.07 16 12 S -0.20 -10.45 21.44 -56.49 -1.21 -11.66 16 13 C -0.54 -31.20 9.50 67.95 0.65 -30.55 16 14 H 0.07 4.06 7.80 -2.91 -0.02 4.03 16 15 C 0.01 0.84 5.49 84.86 0.47 1.30 16 16 N -0.91 -54.84 13.22 21.65 0.29 -54.56 16 17 Si 0.99 43.89 29.55 68.60 2.03 45.91 16 18 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 19 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 20 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 21 C 0.01 0.23 4.94 86.31 0.43 0.65 16 22 C 0.07 1.41 7.01 72.01 0.50 1.92 16 23 O -0.39 -9.64 10.44 -144.74 -1.51 -11.15 16 24 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.04 0.96 8.08 -2.39 -0.02 0.94 16 34 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.07 2.13 6.28 -2.39 -0.01 2.12 16 37 H 0.06 2.39 8.14 -2.40 -0.02 2.37 16 38 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 39 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 40 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.09 2.26 6.05 -2.38 -0.01 2.24 16 42 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -69.31 359.01 -0.13 -69.44 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 0.95 Total: 14.27 kcal Atomic # 6 Polarization: -30.56 SS G_CDS: 5.19 Total: -25.38 kcal Atomic # 7 Polarization: -67.56 SS G_CDS: -4.08 Total: -71.64 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -3.00 Total: -20.94 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 16 Polarization: -10.45 SS G_CDS: -1.21 Total: -11.66 kcal Total: -69.31 -0.13 -69.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599619893.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.092 kcal (2) G-P(sol) polarization free energy of solvation -69.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds