Wall clock time and date at job start Tue Mar 31 2020 06:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42901 * 109.46935 * 2 1 4 4 C 1.42899 * 114.00013 * 184.78862 * 3 2 1 5 5 H 1.09000 * 109.47297 * 330.96394 * 4 3 2 6 6 C 1.50703 * 109.47003 * 90.96003 * 4 3 2 7 7 O 1.21298 * 119.99965 * 4.99762 * 6 4 3 8 8 N 1.34770 * 120.00143 * 185.00397 * 6 4 3 9 9 C 1.39942 * 120.00029 * 174.74124 * 8 6 4 10 10 C 1.39291 * 119.94732 * 147.80956 * 9 8 6 11 11 C 1.38485 * 120.42716 * 179.97438 * 10 9 8 12 12 C 1.37685 * 120.32714 * 359.97438 * 11 10 9 13 13 C 1.40748 * 119.87953 * 0.02562 * 12 11 10 14 14 C 1.41407 * 120.20800 * 179.97438 * 13 12 11 15 15 H 1.08002 * 119.99808 * 205.89519 * 14 13 12 16 16 C 1.39923 * 120.00110 * 25.89259 * 14 13 12 17 17 N 1.30831 * 120.00136 * 16.79603 * 16 14 13 18 18 Si 1.86806 * 120.00255 * 196.79415 * 16 14 13 19 19 H 1.48499 * 109.47131 * 60.00136 * 18 16 14 20 20 H 1.48497 * 109.47303 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.46974 * 300.00245 * 18 16 14 22 22 C 1.38244 * 119.94621 * 327.53611 * 9 8 6 23 23 C 1.53001 * 109.47267 * 210.95448 * 4 3 2 24 24 C 1.52992 * 117.49864 * 352.85759 * 23 4 3 25 25 C 1.53001 * 117.49467 * 61.51602 * 23 4 3 26 26 H 1.08997 * 109.47138 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47046 * 299.99892 * 1 2 3 28 28 H 1.08997 * 109.47687 * 59.99623 * 1 2 3 29 29 H 1.09004 * 109.46759 * 240.00575 * 2 1 3 30 30 H 1.09001 * 109.47489 * 119.99898 * 2 1 3 31 31 H 0.96999 * 120.00006 * 354.73453 * 8 6 4 32 32 H 1.08001 * 119.78372 * 359.97438 * 10 9 8 33 33 H 1.08007 * 119.83588 * 180.02562 * 11 10 9 34 34 H 1.07995 * 120.06456 * 180.02562 * 12 11 10 35 35 H 0.96997 * 120.00480 * 179.97438 * 17 16 14 36 36 H 1.08002 * 120.16041 * 0.02562 * 22 9 8 37 37 H 1.08991 * 115.55168 * 207.18124 * 23 4 3 38 38 H 1.09001 * 117.49839 * 214.99714 * 24 23 4 39 39 H 1.09008 * 117.50207 * 0.02562 * 24 23 4 40 40 H 1.09003 * 117.50041 * 359.97156 * 25 23 4 41 41 H 1.08996 * 117.50141 * 144.97451 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4265 1.4617 -0.1090 5 1 3.8967 0.5817 0.3298 6 6 3.8121 1.5652 -1.5622 7 8 2.9518 1.6345 -2.4145 8 7 5.1127 1.5806 -1.9148 9 6 5.4712 1.5655 -3.2675 10 6 6.6262 2.2206 -3.6881 11 6 6.9906 2.2116 -5.0241 12 6 6.2146 1.5539 -5.9519 13 6 5.0447 0.8875 -5.5416 14 6 4.2423 0.2102 -6.4887 15 1 3.1887 0.0666 -6.2996 16 6 4.8133 -0.2738 -7.6709 17 7 6.1119 -0.4014 -7.7658 18 14 3.7214 -0.7378 -9.1139 19 1 2.9463 0.4512 -9.5505 20 1 4.5643 -1.2198 -10.2375 21 1 2.7858 -1.8143 -8.7005 22 6 4.6814 0.8956 -4.1833 23 6 3.8958 2.7145 0.6335 24 6 2.8208 3.6589 1.1750 25 6 3.6284 2.7854 2.1383 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8900 31 1 5.8004 1.6022 -1.2311 32 1 7.2415 2.7390 -2.9676 33 1 7.8884 2.7224 -5.3397 34 1 6.5030 1.5493 -6.9927 35 1 6.5078 -0.7373 -8.5851 36 1 3.7878 0.3840 -3.8575 37 1 4.8189 3.1614 0.2648 38 1 3.0368 4.7272 1.1625 39 1 1.7792 3.3876 1.0027 40 1 3.1178 1.9399 2.5992 41 1 4.3759 3.2788 2.7596 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599994993.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:23 Heat of formation + Delta-G solvation = -38.838464 kcal Electronic energy + Delta-G solvation = -22715.888706 eV Core-core repulsion = 19368.360061 eV Total energy + Delta-G solvation = -3347.528644 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.15936 -38.31535 -36.86339 -36.36093 -34.38779 -33.01546 -31.37157 -29.80467 -29.09942 -26.96323 -25.27125 -23.02196 -22.39352 -21.96665 -20.94567 -20.80612 -19.53714 -17.91056 -17.20239 -16.65112 -15.93053 -15.41702 -15.13534 -15.04168 -14.79974 -14.59178 -13.97403 -13.66161 -13.13118 -12.90857 -12.86631 -12.56813 -12.14603 -11.95240 -11.64903 -11.59072 -11.47952 -11.25893 -11.15400 -11.09665 -10.93665 -10.63492 -10.47870 -10.30710 -10.21896 -9.94941 -9.60752 -9.27657 -9.03441 -8.72755 -7.43129 -6.89088 -6.69551 -4.32241 2.58332 2.86098 3.09712 3.12822 3.14506 3.23403 3.46388 3.76176 3.78445 3.98172 4.54590 4.67061 4.75370 4.79430 5.00576 5.08684 5.14440 5.21778 5.34241 5.40341 5.53531 5.63995 5.73853 5.77433 5.91147 5.98167 6.10272 6.18399 6.25359 6.40160 6.77201 6.96976 7.05043 7.07565 7.11393 7.26982 7.58940 7.74342 7.98295 8.11182 8.19320 8.28669 8.64446 8.75143 8.95895 9.00326 10.23797 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018993 B = 0.004150 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.907522 B = 6746.102748 C = 7954.171765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.054 3.946 3 O -0.353 6.353 4 C 0.108 3.892 5 H 0.087 0.913 6 C 0.485 3.515 7 O -0.499 6.499 8 N -0.667 5.667 9 C 0.152 3.848 10 C -0.262 4.262 11 C -0.092 4.092 12 C -0.172 4.172 13 C 0.121 3.879 14 C -0.460 4.460 15 H 0.078 0.922 16 C 0.077 3.923 17 N -0.796 5.796 18 Si 0.908 3.092 19 H -0.263 1.263 20 H -0.279 1.279 21 H -0.266 1.266 22 C -0.212 4.212 23 C -0.161 4.161 24 C -0.157 4.157 25 C -0.171 4.171 26 H 0.069 0.931 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.046 0.954 31 H 0.397 0.603 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.118 0.882 35 H 0.280 0.720 36 H 0.106 0.894 37 H 0.119 0.881 38 H 0.093 0.907 39 H 0.108 0.892 40 H 0.095 0.905 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.105 1.733 15.851 16.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.022 4.022 3 O -0.271 6.271 4 C 0.046 3.954 5 H 0.105 0.895 6 C 0.270 3.730 7 O -0.372 6.372 8 N -0.313 5.313 9 C 0.061 3.939 10 C -0.284 4.284 11 C -0.111 4.111 12 C -0.191 4.191 13 C 0.118 3.882 14 C -0.490 4.490 15 H 0.096 0.904 16 C -0.141 4.141 17 N -0.422 5.422 18 Si 0.733 3.267 19 H -0.188 1.188 20 H -0.204 1.204 21 H -0.190 1.190 22 C -0.234 4.234 23 C -0.179 4.179 24 C -0.194 4.194 25 C -0.208 4.208 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.231 0.769 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.136 0.864 35 H 0.091 0.909 36 H 0.124 0.876 37 H 0.137 0.863 38 H 0.111 0.889 39 H 0.127 0.873 40 H 0.113 0.887 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.739 1.820 15.120 15.682 hybrid contribution 0.285 -0.508 -0.411 0.713 sum -3.454 1.312 14.709 15.166 Atomic orbital electron populations 1.21698 0.93491 1.02167 1.03144 1.22581 0.95980 0.83555 1.00109 1.87961 1.18759 1.26711 1.93642 1.21352 0.83747 0.98415 0.91914 0.89508 1.21145 0.82968 0.77558 0.91365 1.90761 1.49033 1.46020 1.51380 1.43503 1.07076 1.73224 1.07449 1.17460 0.96391 0.98623 0.81469 1.20019 1.00932 1.11339 0.96068 1.20457 0.98339 0.99500 0.92794 1.21319 0.97896 1.00929 0.98999 1.17483 0.91398 0.88784 0.90515 1.19543 0.96652 1.31749 1.01016 0.90436 1.25885 0.95176 0.93506 0.99486 1.69818 1.11457 1.33517 1.27393 0.86370 0.80615 0.79764 0.79983 1.18788 1.20368 1.19033 1.20993 1.02859 1.06750 0.92757 1.22279 1.01542 0.98155 0.95931 1.22881 0.98106 0.96382 1.02021 1.22966 1.03493 1.03147 0.91162 0.91174 0.92142 0.91405 0.92764 0.93537 0.76906 0.89313 0.89052 0.86442 0.90907 0.87611 0.86331 0.88878 0.87336 0.88698 0.88596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 10.28 37.16 0.38 -1.21 16 2 C 0.05 0.67 6.44 37.16 0.24 0.91 16 3 O -0.35 -5.11 7.88 -55.09 -0.43 -5.54 16 4 C 0.11 1.46 2.87 -27.88 -0.08 1.38 16 5 H 0.09 0.97 7.81 -51.93 -0.41 0.57 16 6 C 0.48 8.94 6.87 -10.99 -0.08 8.87 16 7 O -0.50 -11.68 14.13 -14.32 -0.20 -11.88 16 8 N -0.67 -12.05 5.23 -9.91 -0.05 -12.10 16 9 C 0.15 3.50 6.29 -83.76 -0.53 2.98 16 10 C -0.26 -5.83 9.96 -39.10 -0.39 -6.22 16 11 C -0.09 -2.17 10.01 -39.69 -0.40 -2.57 16 12 C -0.17 -4.57 8.68 -38.84 -0.34 -4.91 16 13 C 0.12 3.39 5.56 -106.85 -0.59 2.79 16 14 C -0.46 -12.82 9.05 -37.75 -0.34 -13.16 16 15 H 0.08 2.13 7.90 -52.49 -0.41 1.72 16 16 C 0.08 1.99 5.15 -17.35 -0.09 1.90 16 17 N -0.80 -20.94 10.99 55.55 0.61 -20.33 16 18 Si 0.91 19.32 29.59 -169.99 -5.03 14.29 16 19 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 20 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 21 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 22 C -0.21 -5.61 8.40 -38.68 -0.32 -5.93 16 23 C -0.16 -1.82 5.66 -90.62 -0.51 -2.33 16 24 C -0.16 -1.71 9.87 -26.70 -0.26 -1.98 16 25 C -0.17 -1.54 10.21 -26.69 -0.27 -1.81 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.40 5.50 8.69 -40.82 -0.35 5.15 16 32 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 33 H 0.09 1.90 8.06 -52.48 -0.42 1.48 16 34 H 0.12 3.20 6.22 -52.49 -0.33 2.87 16 35 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 36 H 0.11 2.89 6.33 -52.49 -0.33 2.56 16 37 H 0.12 1.27 7.92 -51.93 -0.41 0.86 16 38 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.11 1.32 7.05 -51.92 -0.37 0.96 16 40 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 345.92 15.07 5.21 5.21 Total: -1.00 -31.75 345.92 -9.45 -41.21 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -5.97 Total: 10.44 kcal Atomic # 6 Polarization: -17.71 SS G_CDS: -3.58 Total: -21.29 kcal Atomic # 7 Polarization: -32.99 SS G_CDS: 0.56 Total: -32.43 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: -0.64 Total: -17.43 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.03 Total: 14.29 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.75 -9.45 -41.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599994993.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.368 kcal (2) G-P(sol) polarization free energy of solvation -31.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds