Wall clock time and date at job start Tue Mar 31 2020 06:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42901 * 109.46935 * 2 1 4 4 C 1.42899 * 114.00013 * 184.78862 * 3 2 1 5 5 H 1.09000 * 109.47297 * 330.96394 * 4 3 2 6 6 C 1.50703 * 109.47003 * 90.96003 * 4 3 2 7 7 O 1.21298 * 119.99965 * 4.99762 * 6 4 3 8 8 N 1.34770 * 120.00143 * 185.00397 * 6 4 3 9 9 C 1.39942 * 120.00029 * 174.74124 * 8 6 4 10 10 C 1.39291 * 119.94732 * 147.80956 * 9 8 6 11 11 C 1.38485 * 120.42716 * 179.97438 * 10 9 8 12 12 C 1.37685 * 120.32714 * 359.97438 * 11 10 9 13 13 C 1.40748 * 119.87953 * 0.02562 * 12 11 10 14 14 C 1.41407 * 120.20800 * 179.97438 * 13 12 11 15 15 H 1.08002 * 119.99808 * 205.89519 * 14 13 12 16 16 C 1.39923 * 120.00110 * 25.89259 * 14 13 12 17 17 N 1.30831 * 120.00136 * 16.79603 * 16 14 13 18 18 Si 1.86806 * 120.00255 * 196.79415 * 16 14 13 19 19 H 1.48499 * 109.47131 * 60.00136 * 18 16 14 20 20 H 1.48497 * 109.47303 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.46974 * 300.00245 * 18 16 14 22 22 C 1.38244 * 119.94621 * 327.53611 * 9 8 6 23 23 C 1.53001 * 109.47267 * 210.95448 * 4 3 2 24 24 C 1.52992 * 117.49864 * 352.85759 * 23 4 3 25 25 C 1.53001 * 117.49467 * 61.51602 * 23 4 3 26 26 H 1.08997 * 109.47138 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47046 * 299.99892 * 1 2 3 28 28 H 1.08997 * 109.47687 * 59.99623 * 1 2 3 29 29 H 1.09004 * 109.46759 * 240.00575 * 2 1 3 30 30 H 1.09001 * 109.47489 * 119.99898 * 2 1 3 31 31 H 0.96999 * 120.00006 * 354.73453 * 8 6 4 32 32 H 1.08001 * 119.78372 * 359.97438 * 10 9 8 33 33 H 1.08007 * 119.83588 * 180.02562 * 11 10 9 34 34 H 1.07995 * 120.06456 * 180.02562 * 12 11 10 35 35 H 0.96997 * 120.00480 * 179.97438 * 17 16 14 36 36 H 1.08002 * 120.16041 * 0.02562 * 22 9 8 37 37 H 1.08991 * 115.55168 * 207.18124 * 23 4 3 38 38 H 1.09001 * 117.49839 * 214.99714 * 24 23 4 39 39 H 1.09008 * 117.50207 * 0.02562 * 24 23 4 40 40 H 1.09003 * 117.50041 * 359.97156 * 25 23 4 41 41 H 1.08996 * 117.50141 * 144.97451 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4265 1.4617 -0.1090 5 1 3.8967 0.5817 0.3298 6 6 3.8121 1.5652 -1.5622 7 8 2.9518 1.6345 -2.4145 8 7 5.1127 1.5806 -1.9148 9 6 5.4712 1.5655 -3.2675 10 6 6.6262 2.2206 -3.6881 11 6 6.9906 2.2116 -5.0241 12 6 6.2146 1.5539 -5.9519 13 6 5.0447 0.8875 -5.5416 14 6 4.2423 0.2102 -6.4887 15 1 3.1887 0.0666 -6.2996 16 6 4.8133 -0.2738 -7.6709 17 7 6.1119 -0.4014 -7.7658 18 14 3.7214 -0.7378 -9.1139 19 1 2.9463 0.4512 -9.5505 20 1 4.5643 -1.2198 -10.2375 21 1 2.7858 -1.8143 -8.7005 22 6 4.6814 0.8956 -4.1833 23 6 3.8958 2.7145 0.6335 24 6 2.8208 3.6589 1.1750 25 6 3.6284 2.7854 2.1383 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8900 31 1 5.8004 1.6022 -1.2311 32 1 7.2415 2.7390 -2.9676 33 1 7.8884 2.7224 -5.3397 34 1 6.5030 1.5493 -6.9927 35 1 6.5078 -0.7373 -8.5851 36 1 3.7878 0.3840 -3.8575 37 1 4.8189 3.1614 0.2648 38 1 3.0368 4.7272 1.1625 39 1 1.7792 3.3876 1.0027 40 1 3.1178 1.9399 2.5992 41 1 4.3759 3.2788 2.7596 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599994993.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:23 Heat of formation + Delta-G solvation = -57.196708 kcal Electronic energy + Delta-G solvation = -22716.684779 eV Core-core repulsion = 19368.360061 eV Total energy + Delta-G solvation = -3348.324717 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.57832 -39.71579 -38.52827 -37.28381 -36.17918 -34.84861 -32.35515 -31.77310 -30.65096 -28.38944 -27.25762 -24.01281 -23.58488 -23.07091 -22.75277 -22.13481 -21.01605 -19.64242 -18.66062 -17.86259 -17.43805 -16.84288 -16.70962 -16.48182 -16.15400 -15.98564 -15.47712 -14.96975 -14.84696 -14.62535 -14.04831 -13.86669 -13.56602 -13.40573 -13.07878 -13.00870 -12.91174 -12.78909 -12.38715 -12.37289 -12.20879 -12.16539 -12.05176 -11.63390 -11.42308 -11.28161 -11.11040 -11.08211 -10.85878 -10.19171 -9.41560 -8.77117 -8.62703 -6.39719 0.82797 0.97987 1.34076 1.44897 1.48104 1.69804 2.02707 2.19296 2.62047 2.71607 2.92744 3.53873 3.71367 3.76706 3.88410 4.10699 4.14314 4.23711 4.26365 4.41817 4.44717 4.49268 4.61115 4.77146 4.86700 4.97730 5.01309 5.01982 5.07127 5.09649 5.20301 5.20987 5.24101 5.30093 5.37546 5.72233 5.82817 6.01449 6.05747 6.08967 6.32134 6.62055 6.66664 6.91142 6.98560 7.28317 8.31454 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018993 B = 0.004150 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.907522 B = 6746.102748 C = 7954.171765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.047 3.953 3 O -0.368 6.368 4 C 0.117 3.883 5 H 0.118 0.882 6 C 0.480 3.520 7 O -0.557 6.557 8 N -0.653 5.653 9 C 0.157 3.843 10 C -0.250 4.250 11 C -0.090 4.090 12 C -0.198 4.198 13 C 0.090 3.910 14 C -0.506 4.506 15 H 0.060 0.940 16 C 0.040 3.960 17 N -0.821 5.821 18 Si 0.980 3.020 19 H -0.263 1.263 20 H -0.258 1.258 21 H -0.263 1.263 22 C -0.241 4.241 23 C -0.175 4.175 24 C -0.174 4.174 25 C -0.138 4.138 26 H 0.090 0.910 27 H 0.075 0.925 28 H 0.041 0.959 29 H 0.026 0.974 30 H 0.081 0.919 31 H 0.422 0.578 32 H 0.135 0.865 33 H 0.125 0.875 34 H 0.103 0.897 35 H 0.290 0.710 36 H 0.081 0.919 37 H 0.128 0.872 38 H 0.102 0.898 39 H 0.090 0.910 40 H 0.102 0.898 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.854 2.138 18.153 18.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.029 4.029 3 O -0.286 6.286 4 C 0.055 3.945 5 H 0.136 0.864 6 C 0.268 3.732 7 O -0.434 6.434 8 N -0.301 5.301 9 C 0.064 3.936 10 C -0.271 4.271 11 C -0.109 4.109 12 C -0.218 4.218 13 C 0.087 3.913 14 C -0.536 4.536 15 H 0.078 0.922 16 C -0.175 4.175 17 N -0.447 5.447 18 Si 0.801 3.199 19 H -0.188 1.188 20 H -0.182 1.182 21 H -0.188 1.188 22 C -0.262 4.262 23 C -0.193 4.193 24 C -0.211 4.211 25 C -0.175 4.175 26 H 0.109 0.891 27 H 0.094 0.906 28 H 0.061 0.939 29 H 0.044 0.956 30 H 0.099 0.901 31 H 0.260 0.740 32 H 0.152 0.848 33 H 0.143 0.857 34 H 0.121 0.879 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.146 0.854 38 H 0.120 0.880 39 H 0.108 0.892 40 H 0.120 0.880 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.451 2.228 17.484 17.795 hybrid contribution -0.075 -0.585 -0.987 1.150 sum -2.525 1.643 16.497 16.770 Atomic orbital electron populations 1.21714 0.92520 1.03391 1.02584 1.22772 0.96959 0.82851 1.00302 1.87971 1.19413 1.27951 1.93285 1.21453 0.83684 1.01056 0.88297 0.86438 1.22273 0.82192 0.75482 0.93301 1.90745 1.50580 1.48436 1.53613 1.43400 1.08040 1.72574 1.06065 1.17567 0.95783 0.96967 0.83276 1.20478 1.00406 1.09777 0.96414 1.20854 0.98713 0.98331 0.93001 1.21286 0.98575 1.02749 0.99144 1.17824 0.92463 0.89640 0.91333 1.19699 0.96184 1.34361 1.03321 0.92153 1.26664 0.96657 0.92774 1.01390 1.69843 1.12780 1.33602 1.28492 0.85298 0.78733 0.79334 0.76584 1.18771 1.18191 1.18752 1.20951 1.03177 1.08733 0.93387 1.22316 1.01891 0.97302 0.97833 1.22915 0.97236 0.97167 1.03749 1.23064 1.02544 1.02310 0.89535 0.89103 0.90637 0.93939 0.95558 0.90138 0.74011 0.84755 0.85724 0.87862 0.89925 0.90040 0.85423 0.87997 0.89188 0.87958 0.86129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 10.28 71.98 0.74 -2.33 16 2 C 0.05 1.15 6.44 71.98 0.46 1.61 16 3 O -0.37 -10.47 7.88 -129.99 -1.02 -11.49 16 4 C 0.12 2.99 2.87 29.85 0.09 3.08 16 5 H 0.12 2.29 7.81 -2.39 -0.02 2.27 16 6 C 0.48 17.74 6.87 87.66 0.60 18.35 16 7 O -0.56 -27.40 14.13 15.90 0.22 -27.17 16 8 N -0.65 -22.82 5.23 -303.64 -1.59 -24.41 16 9 C 0.16 7.22 6.29 38.10 0.24 7.46 16 10 C -0.25 -10.55 9.96 22.58 0.22 -10.32 16 11 C -0.09 -4.16 10.01 22.20 0.22 -3.94 16 12 C -0.20 -10.82 8.68 22.75 0.20 -10.62 16 13 C 0.09 5.31 5.56 -21.31 -0.12 5.20 16 14 C -0.51 -30.07 9.05 23.46 0.21 -29.86 16 15 H 0.06 3.62 7.90 -2.91 -0.02 3.60 16 16 C 0.04 2.15 5.15 85.25 0.44 2.59 16 17 N -0.82 -44.38 10.99 21.82 0.24 -44.14 16 18 Si 0.98 40.72 29.59 68.60 2.03 42.75 16 19 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 20 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 21 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 22 C -0.24 -13.38 8.40 22.85 0.19 -13.19 16 23 C -0.17 -3.49 5.66 -10.80 -0.06 -3.55 16 24 C -0.17 -3.44 9.87 30.62 0.30 -3.14 16 25 C -0.14 -1.94 10.21 30.62 0.31 -1.62 16 26 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 28 H 0.04 1.09 8.14 -2.39 -0.02 1.08 16 29 H 0.03 0.77 8.14 -2.38 -0.02 0.75 16 30 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.42 10.41 8.69 -92.71 -0.81 9.61 16 32 H 0.13 4.46 8.06 -2.91 -0.02 4.43 16 33 H 0.12 4.84 8.06 -2.91 -0.02 4.82 16 34 H 0.10 5.84 6.22 -2.91 -0.02 5.82 16 35 H 0.29 14.04 8.30 -92.71 -0.77 13.27 16 36 H 0.08 4.82 6.33 -2.91 -0.02 4.80 16 37 H 0.13 2.30 7.92 -2.39 -0.02 2.28 16 38 H 0.10 1.79 8.14 -2.39 -0.02 1.78 16 39 H 0.09 2.13 7.05 -2.38 -0.02 2.11 16 40 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.12 1.16 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -74.85 345.92 4.17 -70.69 By element: Atomic # 1 Polarization: 33.84 SS G_CDS: 0.23 Total: 34.07 kcal Atomic # 6 Polarization: -44.35 SS G_CDS: 4.05 Total: -40.29 kcal Atomic # 7 Polarization: -67.20 SS G_CDS: -1.35 Total: -68.54 kcal Atomic # 8 Polarization: -37.86 SS G_CDS: -0.80 Total: -38.66 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 2.03 Total: 42.75 kcal Total: -74.85 4.17 -70.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599994993.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.489 kcal (2) G-P(sol) polarization free energy of solvation -74.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds