Wall clock time and date at job start Tue Mar 31 2020 07:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42903 * 113.99973 * 2 1 4 4 C 1.53000 * 109.47444 * 180.02562 * 3 2 1 5 5 H 1.08998 * 110.88323 * 302.57383 * 4 3 2 6 6 C 1.55154 * 111.03997 * 178.66875 * 4 3 2 7 7 C 1.54318 * 102.94627 * 206.40783 * 6 4 3 8 8 N 1.47029 * 107.27036 * 22.19112 * 7 6 4 9 9 C 1.34777 * 125.65044 * 181.09252 * 8 7 6 10 10 O 1.21608 * 119.99739 * 174.83450 * 9 8 7 11 11 C 1.47422 * 119.99729 * 354.84081 * 9 8 7 12 12 C 1.39232 * 120.28235 * 312.41724 * 11 9 8 13 13 C 1.38218 * 120.08845 * 180.02562 * 12 11 9 14 14 C 1.38824 * 120.68003 * 0.02562 * 13 12 11 15 15 C 1.37593 * 120.57172 * 0.02562 * 14 13 12 16 16 C 1.40712 * 119.87948 * 359.67601 * 15 14 13 17 17 C 1.40889 * 120.32725 * 180.30407 * 16 15 14 18 18 H 1.08004 * 120.00013 * 149.39781 * 17 16 15 19 19 C 1.40272 * 119.99858 * 329.38915 * 17 16 15 20 20 N 1.30627 * 120.00160 * 348.95103 * 19 17 16 21 21 Si 1.86806 * 119.99825 * 168.95126 * 19 17 16 22 22 H 1.48508 * 109.46876 * 60.00301 * 21 19 17 23 23 H 1.48495 * 109.46922 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46862 * 300.00176 * 21 19 17 25 25 C 1.47432 * 108.70223 * 1.06044 * 8 7 6 26 26 H 1.08998 * 109.47801 * 59.99787 * 1 2 3 27 27 H 1.09005 * 109.46996 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46984 * 299.99775 * 1 2 3 29 29 H 1.09003 * 109.47245 * 59.99920 * 3 2 1 30 30 H 1.08997 * 109.47219 * 300.00120 * 3 2 1 31 31 H 1.08996 * 110.72152 * 324.77584 * 6 4 3 32 32 H 1.09003 * 110.71809 * 88.04230 * 6 4 3 33 33 H 1.08994 * 109.88498 * 141.60945 * 7 6 4 34 34 H 1.09002 * 109.88294 * 262.62275 * 7 6 4 35 35 H 1.07995 * 119.95459 * 0.03171 * 12 11 9 36 36 H 1.08004 * 119.65769 * 180.02562 * 13 12 11 37 37 H 1.08007 * 119.71454 * 179.97438 * 14 13 12 38 38 H 1.08001 * 120.06001 * 179.97438 * 15 14 13 39 39 H 0.97000 * 120.00180 * 179.97438 * 20 19 17 40 40 H 1.08997 * 110.36848 * 217.03463 * 25 8 7 41 41 H 1.09004 * 110.36630 * 94.70394 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 1 3.8798 0.6074 0.8573 6 6 4.2049 2.5840 -0.0343 7 6 5.5677 2.2993 -0.6999 8 7 5.4277 1.0515 -1.4648 9 6 6.4039 0.4512 -2.1742 10 8 6.2015 -0.6299 -2.6930 11 6 7.7170 1.1051 -2.3209 12 6 7.7964 2.4479 -2.6803 13 6 9.0297 3.0568 -2.8172 14 6 10.2002 2.3427 -2.6002 15 6 10.1539 1.0142 -2.2450 16 6 8.9111 0.3722 -2.0928 17 6 8.8526 -0.9861 -1.7231 18 1 8.0174 -1.3528 -1.1448 19 6 9.8790 -1.8620 -2.1063 20 7 10.7722 -1.4795 -2.9792 21 14 9.9684 -3.5757 -1.3681 22 1 8.7236 -4.3189 -1.6900 23 1 11.1359 -4.2980 -1.9339 24 1 10.1163 -3.4726 0.1059 25 6 4.0428 0.5652 -1.3267 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.6885 1.8464 0.8900 30 1 1.6885 1.8464 -0.8899 31 1 3.6187 3.2776 -0.6371 32 1 4.3422 2.9702 0.9757 33 1 5.8311 3.1174 -1.3702 34 1 6.3366 2.1841 0.0641 35 1 6.8932 3.0144 -2.8523 36 1 9.0831 4.0989 -3.0960 37 1 11.1556 2.8340 -2.7120 38 1 11.0697 0.4665 -2.0786 39 1 11.4822 -2.0851 -3.2439 40 1 4.0269 -0.5231 -1.2674 41 1 3.4347 0.9094 -2.1633 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601212583.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:21 Heat of formation + Delta-G solvation = -61.736593 kcal Electronic energy + Delta-G solvation = -22963.218621 eV Core-core repulsion = 19614.697039 eV Total energy + Delta-G solvation = -3348.521582 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.60222 -38.19590 -37.13850 -36.17834 -33.71381 -32.08263 -29.98593 -29.51903 -29.19881 -26.97717 -25.71289 -24.97843 -22.99547 -21.39347 -20.94528 -20.33206 -18.69334 -17.29137 -16.80272 -16.26293 -16.14648 -15.67460 -15.26158 -14.79123 -14.53106 -14.33461 -13.93094 -13.42517 -13.16813 -12.89896 -12.57852 -12.44780 -12.31888 -12.02529 -11.82051 -11.59262 -11.52677 -11.22340 -11.12469 -10.98451 -10.86797 -10.77296 -10.61525 -10.47276 -9.91100 -9.82606 -9.62498 -9.23321 -8.66848 -7.97241 -7.51966 -7.40508 -6.77375 -4.39883 2.51449 2.84974 3.09319 3.14518 3.25572 3.52606 3.73520 3.96853 3.99219 4.58592 4.63563 4.70369 4.87142 5.08100 5.13264 5.23765 5.25477 5.37804 5.47994 5.55301 5.59759 5.66599 5.79463 5.83934 6.00636 6.14093 6.20592 6.26860 6.29432 6.37102 6.55910 6.97359 6.99760 7.03761 7.13264 7.25048 7.47830 7.69893 7.91526 7.98973 8.17442 8.32790 8.58259 8.81078 8.88059 9.28244 10.16934 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016231 B = 0.004809 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.667042 B = 5820.846123 C = 7180.164984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.388 6.388 3 C 0.074 3.926 4 C -0.103 4.103 5 H 0.092 0.908 6 C -0.124 4.124 7 C 0.108 3.892 8 N -0.631 5.631 9 C 0.596 3.404 10 O -0.535 6.535 11 C -0.251 4.251 12 C -0.059 4.059 13 C -0.246 4.246 14 C -0.095 4.095 15 C -0.154 4.154 16 C 0.148 3.852 17 C -0.431 4.431 18 H 0.079 0.921 19 C 0.077 3.923 20 N -0.790 5.790 21 Si 0.913 3.087 22 H -0.262 1.262 23 H -0.277 1.277 24 H -0.263 1.263 25 C 0.119 3.881 26 H 0.040 0.960 27 H 0.085 0.915 28 H 0.039 0.961 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.121 0.879 39 H 0.283 0.717 40 H 0.078 0.922 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.840 6.986 6.840 16.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C -0.003 4.003 4 C -0.122 4.122 5 H 0.110 0.890 6 C -0.162 4.162 7 C -0.016 4.016 8 N -0.368 5.368 9 C 0.390 3.610 10 O -0.411 6.411 11 C -0.255 4.255 12 C -0.078 4.078 13 C -0.266 4.266 14 C -0.114 4.114 15 C -0.173 4.173 16 C 0.144 3.856 17 C -0.460 4.460 18 H 0.097 0.903 19 C -0.142 4.142 20 N -0.415 5.415 21 Si 0.737 3.263 22 H -0.186 1.186 23 H -0.202 1.202 24 H -0.188 1.188 25 C -0.004 4.004 26 H 0.059 0.941 27 H 0.103 0.897 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.138 0.862 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.542 6.077 6.352 15.315 hybrid contribution -0.170 -0.390 0.171 0.459 sum -12.712 5.686 6.523 15.378 Atomic orbital electron populations 1.22727 0.81235 1.02754 0.99747 1.87939 1.19469 1.27895 1.95355 1.22473 0.92826 0.84753 1.00203 1.22363 0.92823 0.97382 0.99603 0.88974 1.22654 0.96062 0.95971 1.01489 1.21939 0.96640 0.87605 0.95371 1.48597 1.10505 1.25757 1.51929 1.18228 0.82902 0.83692 0.76228 1.90703 1.81420 1.20962 1.48009 1.19415 0.91598 0.95172 1.19342 1.20601 0.96078 0.92944 0.98157 1.20258 0.92652 0.98489 1.15153 1.20788 0.96254 0.94937 0.99390 1.21330 0.98216 0.92906 1.04854 1.17379 0.89419 0.92393 0.86429 1.19569 1.04779 0.92914 1.28692 0.90258 1.25959 0.93864 1.01220 0.93174 1.69692 1.11569 1.37598 1.22627 0.86273 0.78786 0.81067 0.80165 1.18647 1.20205 1.18756 1.22009 0.82960 1.00320 0.95136 0.94133 0.89664 0.94268 0.92994 0.93030 0.90707 0.90031 0.91253 0.91399 0.89037 0.89167 0.89135 0.86154 0.90587 0.90361 0.92501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.39 -4.71 10.56 -35.23 -0.37 -5.08 16 3 C 0.07 0.77 5.38 37.16 0.20 0.97 16 4 C -0.10 -1.27 3.32 -88.47 -0.29 -1.56 16 5 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 6 C -0.12 -1.34 6.42 -24.90 -0.16 -1.50 16 7 C 0.11 1.62 5.98 -3.06 -0.02 1.61 16 8 N -0.63 -12.13 3.33 -171.78 -0.57 -12.71 16 9 C 0.60 14.59 6.69 -12.52 -0.08 14.51 16 10 O -0.53 -15.06 16.00 5.27 0.08 -14.98 16 11 C -0.25 -6.30 5.37 -104.37 -0.56 -6.86 16 12 C -0.06 -1.31 8.41 -39.22 -0.33 -1.64 16 13 C -0.25 -5.32 10.03 -39.37 -0.39 -5.71 16 14 C -0.09 -2.17 10.01 -39.60 -0.40 -2.56 16 15 C -0.15 -3.96 8.64 -38.88 -0.34 -4.29 16 16 C 0.15 4.02 5.55 -106.54 -0.59 3.43 16 17 C -0.43 -12.03 7.81 -37.81 -0.30 -12.32 16 18 H 0.08 2.26 7.09 -52.48 -0.37 1.89 16 19 C 0.08 2.00 5.24 -17.30 -0.09 1.91 16 20 N -0.79 -20.86 10.98 55.56 0.61 -20.25 16 21 Si 0.91 19.82 29.58 -169.99 -5.03 14.80 16 22 H -0.26 -5.85 7.11 56.52 0.40 -5.45 16 23 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 24 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 25 C 0.12 1.95 6.26 -2.52 -0.02 1.93 16 26 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.48 8.10 -51.93 -0.42 0.06 16 31 H 0.07 0.69 8.04 -51.93 -0.42 0.27 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 1.01 5.93 -51.93 -0.31 0.71 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.09 1.77 6.45 -52.49 -0.34 1.43 16 36 H 0.09 1.69 8.06 -52.48 -0.42 1.27 16 37 H 0.09 1.82 8.06 -52.48 -0.42 1.39 16 38 H 0.12 3.16 6.38 -52.49 -0.33 2.82 16 39 H 0.28 6.79 8.29 -40.82 -0.34 6.45 16 40 H 0.08 1.46 7.99 -51.93 -0.41 1.04 16 41 H 0.06 0.89 8.00 -51.93 -0.42 0.47 16 LS Contribution 337.28 15.07 5.08 5.08 Total: -1.00 -31.86 337.28 -8.41 -40.27 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -5.96 Total: 3.58 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: -2.25 Total: -10.71 kcal Atomic # 7 Polarization: -33.00 SS G_CDS: 0.04 Total: -32.96 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -0.29 Total: -20.06 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.03 Total: 14.80 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.86 -8.41 -40.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601212583.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.470 kcal (2) G-P(sol) polarization free energy of solvation -31.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds