Wall clock time and date at job start Tue Mar 31 2020 07:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42903 * 113.99973 * 2 1 4 4 C 1.53000 * 109.47444 * 180.02562 * 3 2 1 5 5 H 1.08998 * 110.88323 * 302.57383 * 4 3 2 6 6 C 1.55154 * 111.03997 * 178.66875 * 4 3 2 7 7 C 1.54318 * 102.94627 * 206.40783 * 6 4 3 8 8 N 1.47029 * 107.27036 * 22.19112 * 7 6 4 9 9 C 1.34777 * 125.65044 * 181.09252 * 8 7 6 10 10 O 1.21608 * 119.99739 * 174.83450 * 9 8 7 11 11 C 1.47422 * 119.99729 * 354.84081 * 9 8 7 12 12 C 1.39232 * 120.28235 * 312.41724 * 11 9 8 13 13 C 1.38218 * 120.08845 * 180.02562 * 12 11 9 14 14 C 1.38824 * 120.68003 * 0.02562 * 13 12 11 15 15 C 1.37593 * 120.57172 * 0.02562 * 14 13 12 16 16 C 1.40712 * 119.87948 * 359.67601 * 15 14 13 17 17 C 1.40889 * 120.32725 * 180.30407 * 16 15 14 18 18 H 1.08004 * 120.00013 * 149.39781 * 17 16 15 19 19 C 1.40272 * 119.99858 * 329.38915 * 17 16 15 20 20 N 1.30627 * 120.00160 * 348.95103 * 19 17 16 21 21 Si 1.86806 * 119.99825 * 168.95126 * 19 17 16 22 22 H 1.48508 * 109.46876 * 60.00301 * 21 19 17 23 23 H 1.48495 * 109.46922 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46862 * 300.00176 * 21 19 17 25 25 C 1.47432 * 108.70223 * 1.06044 * 8 7 6 26 26 H 1.08998 * 109.47801 * 59.99787 * 1 2 3 27 27 H 1.09005 * 109.46996 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46984 * 299.99775 * 1 2 3 29 29 H 1.09003 * 109.47245 * 59.99920 * 3 2 1 30 30 H 1.08997 * 109.47219 * 300.00120 * 3 2 1 31 31 H 1.08996 * 110.72152 * 324.77584 * 6 4 3 32 32 H 1.09003 * 110.71809 * 88.04230 * 6 4 3 33 33 H 1.08994 * 109.88498 * 141.60945 * 7 6 4 34 34 H 1.09002 * 109.88294 * 262.62275 * 7 6 4 35 35 H 1.07995 * 119.95459 * 0.03171 * 12 11 9 36 36 H 1.08004 * 119.65769 * 180.02562 * 13 12 11 37 37 H 1.08007 * 119.71454 * 179.97438 * 14 13 12 38 38 H 1.08001 * 120.06001 * 179.97438 * 15 14 13 39 39 H 0.97000 * 120.00180 * 179.97438 * 20 19 17 40 40 H 1.08997 * 110.36848 * 217.03463 * 25 8 7 41 41 H 1.09004 * 110.36630 * 94.70394 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 1 3.8798 0.6074 0.8573 6 6 4.2049 2.5840 -0.0343 7 6 5.5677 2.2993 -0.6999 8 7 5.4277 1.0515 -1.4648 9 6 6.4039 0.4512 -2.1742 10 8 6.2015 -0.6299 -2.6930 11 6 7.7170 1.1051 -2.3209 12 6 7.7964 2.4479 -2.6803 13 6 9.0297 3.0568 -2.8172 14 6 10.2002 2.3427 -2.6002 15 6 10.1539 1.0142 -2.2450 16 6 8.9111 0.3722 -2.0928 17 6 8.8526 -0.9861 -1.7231 18 1 8.0174 -1.3528 -1.1448 19 6 9.8790 -1.8620 -2.1063 20 7 10.7722 -1.4795 -2.9792 21 14 9.9684 -3.5757 -1.3681 22 1 8.7236 -4.3189 -1.6900 23 1 11.1359 -4.2980 -1.9339 24 1 10.1163 -3.4726 0.1059 25 6 4.0428 0.5652 -1.3267 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.6885 1.8464 0.8900 30 1 1.6885 1.8464 -0.8899 31 1 3.6187 3.2776 -0.6371 32 1 4.3422 2.9702 0.9757 33 1 5.8311 3.1174 -1.3702 34 1 6.3366 2.1841 0.0641 35 1 6.8932 3.0144 -2.8523 36 1 9.0831 4.0989 -3.0960 37 1 11.1556 2.8340 -2.7120 38 1 11.0697 0.4665 -2.0786 39 1 11.4822 -2.0851 -3.2439 40 1 4.0269 -0.5231 -1.2674 41 1 3.4347 0.9094 -2.1633 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601212583.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:20 Heat of formation + Delta-G solvation = -81.963291 kcal Electronic energy + Delta-G solvation = -22964.095716 eV Core-core repulsion = 19614.697039 eV Total energy + Delta-G solvation = -3349.398677 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.13780 -39.47861 -38.58277 -37.76540 -35.63066 -33.46922 -31.84469 -31.28607 -30.35877 -28.00124 -27.31969 -26.29484 -24.35553 -22.97016 -22.78446 -21.41002 -20.37042 -19.16800 -18.17065 -17.61448 -17.23398 -16.98535 -16.55843 -16.50747 -16.02507 -15.78472 -15.31208 -14.81820 -14.64533 -14.43539 -14.32935 -13.80450 -13.73772 -13.50102 -13.20581 -13.01798 -12.89789 -12.83515 -12.67303 -12.40890 -12.25147 -12.11575 -11.82878 -11.82245 -11.62118 -11.44958 -11.15593 -10.61134 -10.53169 -9.61694 -9.34819 -9.31354 -8.69886 -6.42622 0.62663 1.00573 1.29403 1.41099 1.47571 2.01032 2.16664 2.26310 2.70883 2.81307 3.56085 3.63049 3.65799 3.94436 4.15067 4.27772 4.34104 4.38336 4.43748 4.48877 4.57938 4.60911 4.62202 4.71112 4.78040 4.84205 4.88392 4.92462 4.96040 5.06324 5.09763 5.21213 5.29978 5.33056 5.53585 5.60397 5.84923 5.99818 6.09017 6.28082 6.29094 6.54264 6.68569 6.85066 6.92896 7.44906 8.26674 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016231 B = 0.004809 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.667042 B = 5820.846123 C = 7180.164984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.424 6.424 3 C 0.077 3.923 4 C -0.093 4.093 5 H 0.079 0.921 6 C -0.105 4.105 7 C 0.097 3.903 8 N -0.627 5.627 9 C 0.587 3.413 10 O -0.591 6.591 11 C -0.267 4.267 12 C -0.056 4.056 13 C -0.231 4.231 14 C -0.092 4.092 15 C -0.179 4.179 16 C 0.116 3.884 17 C -0.472 4.472 18 H 0.053 0.947 19 C 0.037 3.963 20 N -0.819 5.819 21 Si 0.976 3.024 22 H -0.277 1.277 23 H -0.254 1.254 24 H -0.253 1.253 25 C 0.113 3.887 26 H 0.050 0.950 27 H 0.087 0.913 28 H 0.057 0.943 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.103 0.897 32 H 0.112 0.888 33 H 0.081 0.919 34 H 0.056 0.944 35 H 0.125 0.875 36 H 0.134 0.866 37 H 0.122 0.878 38 H 0.105 0.895 39 H 0.291 0.709 40 H 0.042 0.958 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.153 10.014 7.649 18.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.344 6.344 3 C 0.000 4.000 4 C -0.113 4.113 5 H 0.098 0.902 6 C -0.142 4.142 7 C -0.025 4.025 8 N -0.361 5.361 9 C 0.380 3.620 10 O -0.472 6.472 11 C -0.272 4.272 12 C -0.075 4.075 13 C -0.250 4.250 14 C -0.110 4.110 15 C -0.199 4.199 16 C 0.112 3.888 17 C -0.501 4.501 18 H 0.071 0.929 19 C -0.178 4.178 20 N -0.445 5.445 21 Si 0.796 3.204 22 H -0.202 1.202 23 H -0.177 1.177 24 H -0.177 1.177 25 C -0.010 4.010 26 H 0.069 0.931 27 H 0.106 0.894 28 H 0.075 0.925 29 H 0.099 0.901 30 H 0.084 0.916 31 H 0.122 0.878 32 H 0.130 0.870 33 H 0.099 0.901 34 H 0.075 0.925 35 H 0.143 0.857 36 H 0.152 0.848 37 H 0.140 0.860 38 H 0.123 0.877 39 H 0.102 0.898 40 H 0.060 0.940 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.876 9.171 7.196 18.123 hybrid contribution 0.135 -1.139 -0.113 1.153 sum -13.741 8.032 7.084 17.421 Atomic orbital electron populations 1.22898 0.79431 1.03496 1.01100 1.87898 1.21578 1.29245 1.95663 1.22524 0.90700 0.84488 1.02251 1.22319 0.94874 0.97866 0.96198 0.90213 1.22664 0.93081 0.95206 1.03284 1.22277 0.99435 0.85721 0.95111 1.48560 1.10579 1.26752 1.50252 1.18313 0.83870 0.83282 0.76573 1.90651 1.82540 1.23246 1.50777 1.19729 0.91470 0.96616 1.19364 1.20940 0.97956 0.91771 0.96798 1.20773 0.91632 1.00283 1.12312 1.21171 0.98473 0.93789 0.97612 1.21298 0.97163 0.94412 1.07012 1.17733 0.90951 0.92719 0.87348 1.19552 1.05313 0.94298 1.30951 0.92918 1.26671 0.93254 1.04616 0.93258 1.69715 1.12266 1.39107 1.23430 0.85364 0.78656 0.76396 0.79940 1.20218 1.17748 1.17707 1.22207 0.81756 0.98661 0.98357 0.93124 0.89435 0.92454 0.90084 0.91614 0.87806 0.86966 0.90077 0.92505 0.85745 0.84811 0.85997 0.87684 0.89798 0.93957 0.91341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 113.37 1.25 1.64 16 2 O -0.42 -9.71 10.56 -148.98 -1.57 -11.29 16 3 C 0.08 1.35 5.38 71.98 0.39 1.73 16 4 C -0.09 -2.13 3.32 -9.40 -0.03 -2.16 16 5 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 6 C -0.10 -1.85 6.42 31.78 0.20 -1.65 16 7 C 0.10 2.72 5.98 86.73 0.52 3.23 16 8 N -0.63 -24.39 3.33 -815.64 -2.71 -27.11 16 9 C 0.59 29.99 6.69 86.66 0.58 30.57 16 10 O -0.59 -35.67 16.00 -4.06 -0.06 -35.73 16 11 C -0.27 -13.73 5.37 -19.70 -0.11 -13.84 16 12 C -0.06 -2.38 8.41 22.50 0.19 -2.19 16 13 C -0.23 -9.21 10.03 22.41 0.22 -8.98 16 14 C -0.09 -4.05 10.01 22.26 0.22 -3.83 16 15 C -0.18 -9.46 8.64 22.72 0.20 -9.26 16 16 C 0.12 6.59 5.55 -21.11 -0.12 6.48 16 17 C -0.47 -28.18 7.81 23.41 0.18 -27.99 16 18 H 0.05 3.29 7.09 -2.91 -0.02 3.27 16 19 C 0.04 2.05 5.24 85.37 0.45 2.50 16 20 N -0.82 -45.11 10.98 21.88 0.24 -44.87 16 21 Si 0.98 42.63 29.58 68.60 2.03 44.66 16 22 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 23 H -0.25 -10.01 7.11 99.48 0.71 -9.31 16 24 H -0.25 -10.50 7.11 99.48 0.71 -9.80 16 25 C 0.11 3.74 6.26 86.85 0.54 4.28 16 26 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 28 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 29 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.07 0.98 8.10 -2.39 -0.02 0.96 16 31 H 0.10 1.33 8.04 -2.39 -0.02 1.31 16 32 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.08 2.10 5.93 -2.39 -0.01 2.08 16 34 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.12 4.37 6.45 -2.91 -0.02 4.35 16 36 H 0.13 4.23 8.06 -2.91 -0.02 4.21 16 37 H 0.12 4.53 8.06 -2.91 -0.02 4.51 16 38 H 0.11 5.75 6.38 -2.91 -0.02 5.73 16 39 H 0.29 14.42 8.29 -92.71 -0.77 13.65 16 40 H 0.04 1.69 7.99 -2.39 -0.02 1.67 16 41 H 0.07 2.10 8.00 -2.38 -0.02 2.08 16 Total: -1.00 -76.12 337.28 3.63 -72.49 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: 1.02 Total: 21.30 kcal Atomic # 6 Polarization: -24.14 SS G_CDS: 4.69 Total: -19.45 kcal Atomic # 7 Polarization: -69.50 SS G_CDS: -2.47 Total: -71.98 kcal Atomic # 8 Polarization: -45.38 SS G_CDS: -1.64 Total: -47.02 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -76.12 3.63 -72.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601212583.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.472 kcal (2) G-P(sol) polarization free energy of solvation -76.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds