Wall clock time and date at job start Tue Mar 31 2020 06:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46496 * 120.00011 * 2 1 4 4 C 1.52998 * 109.47292 * 89.99548 * 3 2 1 5 5 H 1.09003 * 110.45568 * 54.30611 * 4 3 2 6 6 C 1.54510 * 110.51438 * 176.90547 * 4 3 2 7 7 C 1.54475 * 104.06354 * 118.64564 * 6 4 3 8 8 O 1.44430 * 104.80130 * 23.98297 * 7 6 4 9 9 C 1.44642 * 105.36890 * 319.56465 * 8 7 6 10 10 C 1.34782 * 120.00292 * 180.02562 * 2 1 3 11 11 O 1.21607 * 119.99848 * 185.40282 * 10 2 1 12 12 C 1.47428 * 119.99729 * 5.40046 * 10 2 1 13 13 C 1.39228 * 120.28414 * 44.11772 * 12 10 2 14 14 C 1.38220 * 120.09140 * 179.74421 * 13 12 10 15 15 C 1.38827 * 120.67672 * 0.55428 * 14 13 12 16 16 C 1.37599 * 120.56847 * 359.69812 * 15 14 13 17 17 C 1.40706 * 119.88512 * 0.02605 * 16 15 14 18 18 C 1.40882 * 120.32717 * 179.97438 * 17 16 15 19 19 H 1.08010 * 119.99627 * 207.37627 * 18 17 16 20 20 C 1.40267 * 120.00617 * 27.37495 * 18 17 16 21 21 N 1.30637 * 119.99893 * 13.94651 * 20 18 17 22 22 Si 1.86802 * 120.00372 * 193.94549 * 20 18 17 23 23 H 1.48495 * 109.46941 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46904 * 120.00097 * 22 20 18 25 25 H 1.48496 * 109.46952 * 239.99848 * 22 20 18 26 26 H 1.08998 * 109.47059 * 95.09750 * 1 2 3 27 27 H 1.09000 * 109.46719 * 215.08777 * 1 2 3 28 28 H 1.08997 * 109.47237 * 335.09385 * 1 2 3 29 29 H 1.09008 * 109.47107 * 330.00011 * 3 2 1 30 30 H 1.08999 * 109.47694 * 209.99989 * 3 2 1 31 31 H 1.09004 * 110.51401 * 237.29261 * 6 4 3 32 32 H 1.09004 * 110.50947 * 359.86820 * 6 4 3 33 33 H 1.09005 * 110.37304 * 142.81024 * 7 6 4 34 34 H 1.08998 * 110.37562 * 265.14950 * 7 6 4 35 35 H 1.09005 * 110.33737 * 281.59569 * 9 8 7 36 36 H 1.08993 * 110.51154 * 159.18847 * 9 8 7 37 37 H 1.08003 * 119.95254 * 0.02562 * 13 12 10 38 38 H 1.08004 * 119.66265 * 180.29787 * 14 13 12 39 39 H 1.08005 * 119.71728 * 179.72068 * 15 14 13 40 40 H 1.07995 * 120.05712 * 180.02562 * 16 15 14 41 41 H 0.96992 * 119.99958 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7104 1.4425 5 1 2.9533 0.9192 2.0003 6 6 3.2915 3.0075 1.4713 7 6 2.3734 4.0330 2.1726 8 8 1.4657 3.2352 2.9635 9 6 1.1263 2.1021 2.1311 10 6 2.1390 -1.1672 -0.0005 11 8 3.3510 -1.1695 0.0986 12 6 1.4067 -2.4411 -0.1213 13 6 0.3804 -2.5755 -1.0524 14 6 -0.2999 -3.7733 -1.1659 15 6 0.0205 -4.8499 -0.3500 16 6 1.0264 -4.7458 0.5831 17 6 1.7383 -3.5393 0.7149 18 6 2.7696 -3.4223 1.6675 19 1 3.0110 -2.4563 2.0860 20 6 3.4828 -4.5601 2.0725 21 7 3.3895 -5.6680 1.3865 22 14 4.5662 -4.4914 3.5927 23 1 4.4996 -3.1322 4.1870 24 1 4.0907 -5.4889 4.5848 25 1 5.9691 -4.7989 3.2150 26 1 -0.3633 -0.0913 -1.0236 27 1 -0.3633 -0.8409 0.5907 28 1 -0.3633 0.9321 0.4328 29 1 1.6083 2.0284 -0.5139 30 1 3.1499 1.1385 -0.5138 31 1 4.2060 2.8582 2.0454 32 1 3.5267 3.3328 0.4578 33 1 2.9596 4.6900 2.8152 34 1 1.8221 4.6157 1.4347 35 1 0.3824 2.3878 1.3873 36 1 0.7572 1.2774 2.7407 37 1 0.1185 -1.7440 -1.6900 38 1 -1.0917 -3.8714 -1.8938 39 1 -0.5242 -5.7772 -0.4488 40 1 1.2690 -5.5886 1.2131 41 1 3.8824 -6.4549 1.6667 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601279484.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:27 Heat of formation + Delta-G solvation = -61.122002 kcal Electronic energy + Delta-G solvation = -23447.703998 eV Core-core repulsion = 20099.209067 eV Total energy + Delta-G solvation = -3348.494931 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.82537 -38.79196 -36.89679 -35.05765 -33.76442 -32.54047 -30.14540 -29.71667 -28.97273 -26.98360 -25.75039 -24.73063 -22.87027 -21.70656 -20.97585 -20.34948 -18.62963 -17.29658 -16.60996 -16.24007 -15.87979 -15.55222 -15.17984 -15.05610 -14.47442 -14.28934 -13.83718 -13.50247 -13.06645 -12.79321 -12.62269 -12.47749 -12.22674 -11.98732 -11.90301 -11.65209 -11.53485 -11.25102 -11.16458 -11.02184 -10.84265 -10.81591 -10.50698 -10.48387 -9.95966 -9.78230 -9.64867 -9.28267 -8.66856 -8.08467 -7.54656 -7.47235 -6.84954 -4.43721 2.45765 2.79197 3.06416 3.13882 3.19458 3.59787 3.91081 3.93134 4.00058 4.57893 4.68332 4.78693 4.90430 5.04042 5.23397 5.34725 5.48103 5.57643 5.59542 5.63955 5.69591 5.78135 5.81401 5.90190 5.96996 6.08822 6.16605 6.17750 6.32920 6.35136 6.56395 6.77211 6.96201 7.07740 7.14368 7.21042 7.44888 7.67640 7.84288 7.96676 8.10189 8.20532 8.54296 8.76811 8.84302 9.22500 10.08398 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014400 B = 0.005799 C = 0.004510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.963818 B = 4827.110564 C = 6207.551111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.630 5.630 3 C 0.131 3.869 4 C -0.138 4.138 5 H 0.092 0.908 6 C -0.148 4.148 7 C 0.045 3.955 8 O -0.380 6.380 9 C 0.053 3.947 10 C 0.580 3.420 11 O -0.536 6.536 12 C -0.260 4.260 13 C -0.057 4.057 14 C -0.250 4.250 15 C -0.093 4.093 16 C -0.158 4.158 17 C 0.146 3.854 18 C -0.424 4.424 19 H 0.083 0.917 20 C 0.075 3.925 21 N -0.784 5.784 22 Si 0.912 3.088 23 H -0.259 1.259 24 H -0.271 1.271 25 H -0.272 1.272 26 H 0.049 0.951 27 H 0.077 0.923 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.122 0.878 41 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.120 12.008 -0.243 12.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.366 5.366 3 C 0.007 3.993 4 C -0.158 4.158 5 H 0.110 0.890 6 C -0.186 4.186 7 C -0.032 4.032 8 O -0.299 6.299 9 C -0.024 4.024 10 C 0.373 3.627 11 O -0.412 6.412 12 C -0.265 4.265 13 C -0.076 4.076 14 C -0.270 4.270 15 C -0.112 4.112 16 C -0.177 4.177 17 C 0.142 3.858 18 C -0.452 4.452 19 H 0.101 0.899 20 C -0.144 4.144 21 N -0.408 5.408 22 Si 0.736 3.264 23 H -0.182 1.182 24 H -0.196 1.196 25 H -0.197 1.197 26 H 0.068 0.932 27 H 0.096 0.904 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.106 0.894 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.139 0.861 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.434 11.793 0.012 12.283 hybrid contribution 0.516 -0.165 0.254 0.598 sum -2.918 11.628 0.265 11.992 Atomic orbital electron populations 1.21843 0.80278 1.02315 1.01394 1.47934 1.06482 1.05486 1.76667 1.21304 0.97902 0.85512 0.94543 1.22990 0.96220 0.98223 0.98396 0.89003 1.22930 0.99357 0.94692 1.01636 1.23388 0.91106 0.94011 0.94654 1.89139 1.64860 1.36540 1.39386 1.23619 0.96107 0.88746 0.93907 1.18575 0.86922 0.83115 0.74082 1.90686 1.14374 1.87022 1.49114 1.19372 1.05427 0.95338 1.06338 1.20697 0.94038 0.96318 0.96541 1.20258 1.05695 0.94945 1.06060 1.20792 0.97364 0.96633 0.96413 1.21363 0.96262 0.99148 1.00948 1.17394 0.90095 0.89508 0.88825 1.19702 1.12567 0.94803 1.18164 0.89901 1.26014 0.96729 0.94485 0.97175 1.69726 1.34207 1.02268 1.34639 0.86187 0.79549 0.79753 0.80933 1.18199 1.19621 1.19716 0.93235 0.90424 0.92312 0.91354 0.89987 0.90542 0.90387 0.89415 0.92536 0.92295 0.88980 0.88860 0.89228 0.89205 0.86058 0.90612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.21 8.65 59.85 0.52 1.73 16 2 N -0.63 -10.96 2.80 -182.85 -0.51 -11.47 16 3 C 0.13 1.90 4.57 -4.05 -0.02 1.88 16 4 C -0.14 -1.95 3.35 -89.05 -0.30 -2.25 16 5 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 6 C -0.15 -1.67 6.74 -25.16 -0.17 -1.84 16 7 C 0.05 0.48 7.64 37.93 0.29 0.77 16 8 O -0.38 -5.32 11.65 -35.23 -0.41 -5.73 16 9 C 0.05 0.70 6.19 37.93 0.23 0.93 16 10 C 0.58 13.19 6.65 -12.52 -0.08 13.11 16 11 O -0.54 -13.99 15.09 5.27 0.08 -13.91 16 12 C -0.26 -6.25 4.93 -104.37 -0.51 -6.77 16 13 C -0.06 -1.22 7.98 -39.22 -0.31 -1.53 16 14 C -0.25 -5.29 10.03 -39.37 -0.39 -5.68 16 15 C -0.09 -2.09 10.01 -39.60 -0.40 -2.49 16 16 C -0.16 -3.98 8.67 -38.88 -0.34 -4.32 16 17 C 0.15 3.85 5.57 -106.54 -0.59 3.26 16 18 C -0.42 -11.48 7.86 -37.82 -0.30 -11.78 16 19 H 0.08 2.30 6.83 -52.48 -0.36 1.94 16 20 C 0.08 1.92 5.20 -17.30 -0.09 1.83 16 21 N -0.78 -20.21 10.92 55.56 0.61 -19.60 16 22 Si 0.91 19.33 29.58 -169.99 -5.03 14.30 16 23 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 24 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 25 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 26 H 0.05 0.65 6.69 -51.93 -0.35 0.30 16 27 H 0.08 1.23 6.80 -51.93 -0.35 0.88 16 28 H 0.06 0.66 5.84 -51.93 -0.30 0.36 16 29 H 0.07 0.79 7.95 -51.92 -0.41 0.37 16 30 H 0.08 1.31 7.50 -51.93 -0.39 0.92 16 31 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.08 0.75 7.73 -51.93 -0.40 0.35 16 33 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.68 6.29 -51.93 -0.33 0.35 16 36 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.09 1.72 6.15 -52.48 -0.32 1.40 16 38 H 0.09 1.65 8.06 -52.48 -0.42 1.23 16 39 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 40 H 0.12 3.14 6.23 -52.49 -0.33 2.81 16 41 H 0.28 6.58 8.29 -40.82 -0.34 6.24 16 LS Contribution 328.52 15.07 4.95 4.95 Total: -1.00 -30.26 328.52 -8.42 -38.67 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -5.64 Total: 5.95 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: -2.46 Total: -13.16 kcal Atomic # 7 Polarization: -31.16 SS G_CDS: 0.09 Total: -31.07 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.33 Total: -19.65 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.03 Total: 14.30 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.26 -8.42 -38.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601279484.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.449 kcal (2) G-P(sol) polarization free energy of solvation -30.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds