Wall clock time and date at job start Tue Mar 31 2020 06:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46496 * 120.00011 * 2 1 4 4 C 1.52998 * 109.47292 * 89.99548 * 3 2 1 5 5 H 1.09003 * 110.45568 * 54.30611 * 4 3 2 6 6 C 1.54510 * 110.51438 * 176.90547 * 4 3 2 7 7 C 1.54475 * 104.06354 * 118.64564 * 6 4 3 8 8 O 1.44430 * 104.80130 * 23.98297 * 7 6 4 9 9 C 1.44642 * 105.36890 * 319.56465 * 8 7 6 10 10 C 1.34782 * 120.00292 * 180.02562 * 2 1 3 11 11 O 1.21607 * 119.99848 * 185.40282 * 10 2 1 12 12 C 1.47428 * 119.99729 * 5.40046 * 10 2 1 13 13 C 1.39228 * 120.28414 * 44.11772 * 12 10 2 14 14 C 1.38220 * 120.09140 * 179.74421 * 13 12 10 15 15 C 1.38827 * 120.67672 * 0.55428 * 14 13 12 16 16 C 1.37599 * 120.56847 * 359.69812 * 15 14 13 17 17 C 1.40706 * 119.88512 * 0.02605 * 16 15 14 18 18 C 1.40882 * 120.32717 * 179.97438 * 17 16 15 19 19 H 1.08010 * 119.99627 * 207.37627 * 18 17 16 20 20 C 1.40267 * 120.00617 * 27.37495 * 18 17 16 21 21 N 1.30637 * 119.99893 * 13.94651 * 20 18 17 22 22 Si 1.86802 * 120.00372 * 193.94549 * 20 18 17 23 23 H 1.48495 * 109.46941 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46904 * 120.00097 * 22 20 18 25 25 H 1.48496 * 109.46952 * 239.99848 * 22 20 18 26 26 H 1.08998 * 109.47059 * 95.09750 * 1 2 3 27 27 H 1.09000 * 109.46719 * 215.08777 * 1 2 3 28 28 H 1.08997 * 109.47237 * 335.09385 * 1 2 3 29 29 H 1.09008 * 109.47107 * 330.00011 * 3 2 1 30 30 H 1.08999 * 109.47694 * 209.99989 * 3 2 1 31 31 H 1.09004 * 110.51401 * 237.29261 * 6 4 3 32 32 H 1.09004 * 110.50947 * 359.86820 * 6 4 3 33 33 H 1.09005 * 110.37304 * 142.81024 * 7 6 4 34 34 H 1.08998 * 110.37562 * 265.14950 * 7 6 4 35 35 H 1.09005 * 110.33737 * 281.59569 * 9 8 7 36 36 H 1.08993 * 110.51154 * 159.18847 * 9 8 7 37 37 H 1.08003 * 119.95254 * 0.02562 * 13 12 10 38 38 H 1.08004 * 119.66265 * 180.29787 * 14 13 12 39 39 H 1.08005 * 119.71728 * 179.72068 * 15 14 13 40 40 H 1.07995 * 120.05712 * 180.02562 * 16 15 14 41 41 H 0.96992 * 119.99958 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7104 1.4425 5 1 2.9533 0.9192 2.0003 6 6 3.2915 3.0075 1.4713 7 6 2.3734 4.0330 2.1726 8 8 1.4657 3.2352 2.9635 9 6 1.1263 2.1021 2.1311 10 6 2.1390 -1.1672 -0.0005 11 8 3.3510 -1.1695 0.0986 12 6 1.4067 -2.4411 -0.1213 13 6 0.3804 -2.5755 -1.0524 14 6 -0.2999 -3.7733 -1.1659 15 6 0.0205 -4.8499 -0.3500 16 6 1.0264 -4.7458 0.5831 17 6 1.7383 -3.5393 0.7149 18 6 2.7696 -3.4223 1.6675 19 1 3.0110 -2.4563 2.0860 20 6 3.4828 -4.5601 2.0725 21 7 3.3895 -5.6680 1.3865 22 14 4.5662 -4.4914 3.5927 23 1 4.4996 -3.1322 4.1870 24 1 4.0907 -5.4889 4.5848 25 1 5.9691 -4.7989 3.2150 26 1 -0.3633 -0.0913 -1.0236 27 1 -0.3633 -0.8409 0.5907 28 1 -0.3633 0.9321 0.4328 29 1 1.6083 2.0284 -0.5139 30 1 3.1499 1.1385 -0.5138 31 1 4.2060 2.8582 2.0454 32 1 3.5267 3.3328 0.4578 33 1 2.9596 4.6900 2.8152 34 1 1.8221 4.6157 1.4347 35 1 0.3824 2.3878 1.3873 36 1 0.7572 1.2774 2.7407 37 1 0.1185 -1.7440 -1.6900 38 1 -1.0917 -3.8714 -1.8938 39 1 -0.5242 -5.7772 -0.4488 40 1 1.2690 -5.5886 1.2131 41 1 3.8824 -6.4549 1.6667 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601279484.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:27 Heat of formation + Delta-G solvation = -79.623565 kcal Electronic energy + Delta-G solvation = -23448.506286 eV Core-core repulsion = 20099.209067 eV Total energy + Delta-G solvation = -3349.297219 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.19796 -40.13923 -38.63047 -36.60276 -35.60115 -33.75444 -31.86767 -31.37095 -30.14382 -28.19873 -27.52285 -26.24524 -23.90186 -23.29444 -22.74400 -21.50534 -20.23780 -19.16016 -17.93533 -17.63526 -17.25545 -17.05714 -16.57530 -16.19990 -16.02789 -15.80717 -15.30239 -15.04731 -14.56204 -14.33294 -14.05599 -13.79365 -13.75918 -13.50478 -13.21490 -13.09565 -12.94703 -12.80631 -12.62925 -12.56499 -12.25943 -12.18320 -11.94980 -11.80173 -11.53868 -11.45495 -11.14323 -10.75277 -10.44247 -9.56388 -9.32792 -9.32046 -8.71917 -6.40192 0.64111 1.00891 1.28957 1.43135 1.45588 2.08107 2.15027 2.32807 2.70113 3.02050 3.65028 3.68613 3.70753 3.90832 4.05545 4.20341 4.26765 4.33819 4.38351 4.43629 4.58503 4.60399 4.72894 4.76787 4.78704 4.84147 4.88629 4.97011 5.00039 5.08089 5.09375 5.17080 5.25078 5.36032 5.59734 5.77639 5.83620 5.88010 6.01527 6.12290 6.28668 6.51321 6.66432 6.86682 6.95327 7.52814 8.23991 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014400 B = 0.005799 C = 0.004510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.963818 B = 4827.110564 C = 6207.551111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.620 5.620 3 C 0.130 3.870 4 C -0.139 4.139 5 H 0.041 0.959 6 C -0.144 4.144 7 C 0.045 3.955 8 O -0.404 6.404 9 C 0.058 3.942 10 C 0.573 3.427 11 O -0.585 6.585 12 C -0.274 4.274 13 C -0.053 4.053 14 C -0.238 4.238 15 C -0.092 4.092 16 C -0.186 4.186 17 C 0.114 3.886 18 C -0.463 4.463 19 H 0.057 0.943 20 C 0.037 3.963 21 N -0.815 5.815 22 Si 0.974 3.026 23 H -0.271 1.271 24 H -0.250 1.250 25 H -0.266 1.266 26 H 0.073 0.927 27 H 0.057 0.943 28 H 0.095 0.905 29 H 0.116 0.884 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.117 0.883 40 H 0.104 0.896 41 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.135 14.049 -1.703 15.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.353 5.353 3 C 0.008 3.992 4 C -0.159 4.159 5 H 0.060 0.940 6 C -0.182 4.182 7 C -0.031 4.031 8 O -0.323 6.323 9 C -0.019 4.019 10 C 0.365 3.635 11 O -0.465 6.465 12 C -0.278 4.278 13 C -0.071 4.071 14 C -0.257 4.257 15 C -0.111 4.111 16 C -0.205 4.205 17 C 0.110 3.890 18 C -0.492 4.492 19 H 0.075 0.925 20 C -0.179 4.179 21 N -0.441 5.441 22 Si 0.795 3.205 23 H -0.195 1.195 24 H -0.174 1.174 25 H -0.190 1.190 26 H 0.091 0.909 27 H 0.076 0.924 28 H 0.113 0.887 29 H 0.134 0.866 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.092 0.908 37 H 0.147 0.853 38 H 0.148 0.852 39 H 0.135 0.865 40 H 0.122 0.878 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.502 13.861 -1.457 14.984 hybrid contribution 0.995 -0.691 0.570 1.339 sum -4.506 13.170 -0.888 13.948 Atomic orbital electron populations 1.22074 0.77870 1.03524 1.02801 1.47877 1.07996 1.04935 1.74494 1.21537 0.97747 0.84971 0.94948 1.22878 0.97251 0.98165 0.97591 0.94007 1.22930 0.98749 0.93399 1.03103 1.23607 0.90787 0.93531 0.95208 1.89117 1.65644 1.36922 1.40656 1.23573 0.95860 0.88415 0.94017 1.18575 0.86370 0.84470 0.74046 1.90648 1.16424 1.87918 1.51547 1.19743 1.06070 0.95612 1.06423 1.21052 0.92690 0.97706 0.95668 1.20757 1.05628 0.93922 1.05425 1.21149 0.96257 0.98377 0.95293 1.21314 0.98025 0.98597 1.02596 1.17757 0.90504 0.91046 0.89665 1.19653 1.14670 0.94406 1.20480 0.92491 1.26694 0.97678 0.93932 0.99594 1.69747 1.35536 1.02865 1.35918 0.85291 0.78049 0.79360 0.77831 1.19486 1.17416 1.19040 0.90892 0.92438 0.88662 0.86590 0.91828 0.91482 0.88040 0.87977 0.89807 0.89384 0.90836 0.85266 0.85156 0.86452 0.87775 0.89823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.01 8.65 127.77 1.11 3.12 16 2 N -0.62 -20.95 2.80 -850.67 -2.39 -23.33 16 3 C 0.13 3.57 4.57 86.38 0.39 3.97 16 4 C -0.14 -3.88 3.35 -9.78 -0.03 -3.91 16 5 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 6 C -0.14 -3.04 6.74 31.61 0.21 -2.83 16 7 C 0.04 0.83 7.64 72.48 0.55 1.38 16 8 O -0.40 -10.62 11.65 -148.98 -1.74 -12.35 16 9 C 0.06 1.44 6.19 72.48 0.45 1.89 16 10 C 0.57 26.78 6.65 86.66 0.58 27.36 16 11 O -0.58 -32.37 15.09 -4.05 -0.06 -32.44 16 12 C -0.27 -13.38 4.93 -19.70 -0.10 -13.47 16 13 C -0.05 -2.13 7.98 22.50 0.18 -1.95 16 14 C -0.24 -9.32 10.03 22.41 0.22 -9.09 16 15 C -0.09 -4.03 10.01 22.26 0.22 -3.80 16 16 C -0.19 -9.66 8.67 22.72 0.20 -9.46 16 17 C 0.11 6.29 5.57 -21.11 -0.12 6.18 16 18 C -0.46 -26.89 7.86 23.41 0.18 -26.70 16 19 H 0.06 3.47 6.83 -2.91 -0.02 3.45 16 20 C 0.04 1.98 5.20 85.36 0.44 2.42 16 21 N -0.81 -44.04 10.92 21.88 0.24 -43.80 16 22 Si 0.97 41.80 29.58 68.60 2.03 43.83 16 23 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 24 H -0.25 -9.79 7.11 99.48 0.71 -9.08 16 25 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 26 H 0.07 1.56 6.69 -2.39 -0.02 1.54 16 27 H 0.06 1.73 6.80 -2.39 -0.02 1.71 16 28 H 0.09 1.74 5.84 -2.39 -0.01 1.72 16 29 H 0.12 2.12 7.95 -2.38 -0.02 2.10 16 30 H 0.06 2.01 7.50 -2.39 -0.02 1.99 16 31 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 32 H 0.10 1.67 7.73 -2.38 -0.02 1.65 16 33 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 34 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.09 1.67 6.29 -2.38 -0.01 1.65 16 36 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.13 4.22 6.15 -2.91 -0.02 4.20 16 38 H 0.13 4.08 8.06 -2.91 -0.02 4.06 16 39 H 0.12 4.39 8.06 -2.91 -0.02 4.37 16 40 H 0.10 5.67 6.23 -2.91 -0.02 5.65 16 41 H 0.29 14.08 8.29 -92.71 -0.77 13.31 16 Total: -1.00 -72.01 328.52 3.62 -68.40 By element: Atomic # 1 Polarization: 23.58 SS G_CDS: 1.04 Total: 24.61 kcal Atomic # 6 Polarization: -29.41 SS G_CDS: 4.50 Total: -24.91 kcal Atomic # 7 Polarization: -64.99 SS G_CDS: -2.15 Total: -67.14 kcal Atomic # 8 Polarization: -42.99 SS G_CDS: -1.80 Total: -44.79 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Total: -72.01 3.62 -68.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601279484.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.229 kcal (2) G-P(sol) polarization free energy of solvation -72.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds