Wall clock time and date at job start Tue Mar 31 2020 06:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46507 * 120.00138 * 2 1 4 4 C 1.53005 * 109.46844 * 269.99707 * 3 2 1 5 5 H 1.08996 * 109.47033 * 59.99877 * 4 3 2 6 6 O 1.42899 * 109.46839 * 300.00035 * 4 3 2 7 7 C 1.53002 * 109.46879 * 179.97438 * 4 3 2 8 8 C 1.53003 * 117.49576 * 248.74396 * 7 4 3 9 9 C 1.52997 * 117.49644 * 180.08896 * 7 4 3 10 10 C 1.34782 * 120.00297 * 179.97438 * 2 1 3 11 11 O 1.21608 * 120.00052 * 184.85698 * 10 2 1 12 12 C 1.47431 * 119.99597 * 4.85886 * 10 2 1 13 13 C 1.39232 * 120.28335 * 309.15981 * 12 10 2 14 14 C 1.38214 * 120.09486 * 180.28164 * 13 12 10 15 15 C 1.38830 * 120.67106 * 359.69645 * 14 13 12 16 16 C 1.37595 * 120.57346 * 359.97438 * 15 14 13 17 17 C 1.40703 * 119.88333 * 0.02779 * 16 15 14 18 18 C 1.40884 * 120.32974 * 179.97438 * 17 16 15 19 19 H 1.08000 * 120.00177 * 214.16755 * 18 17 16 20 20 C 1.40272 * 120.00061 * 34.17541 * 18 17 16 21 21 N 1.30632 * 119.99870 * 193.80181 * 20 18 17 22 22 Si 1.86803 * 120.00052 * 13.79801 * 20 18 17 23 23 H 1.48501 * 109.46772 * 267.83784 * 22 20 18 24 24 H 1.48497 * 109.46894 * 27.83731 * 22 20 18 25 25 H 1.48500 * 109.47031 * 147.83916 * 22 20 18 26 26 H 1.09004 * 109.47494 * 273.02214 * 1 2 3 27 27 H 1.09004 * 109.47199 * 33.01887 * 1 2 3 28 28 H 1.08996 * 109.47027 * 153.01809 * 1 2 3 29 29 H 1.08995 * 109.47055 * 29.99336 * 3 2 1 30 30 H 1.08996 * 109.47406 * 149.99812 * 3 2 1 31 31 H 0.96703 * 113.99944 * 299.99576 * 6 4 3 32 32 H 1.08999 * 115.55166 * 34.41862 * 7 4 3 33 33 H 1.08998 * 117.50112 * 0.02562 * 8 7 4 34 34 H 1.09000 * 117.49495 * 145.02113 * 8 7 4 35 35 H 1.09000 * 117.50050 * 214.98143 * 9 7 4 36 36 H 1.09010 * 117.49942 * 359.97438 * 9 7 4 37 37 H 1.07998 * 119.95309 * 0.02562 * 13 12 10 38 38 H 1.07998 * 119.66799 * 179.71593 * 14 13 12 39 39 H 1.08006 * 119.71358 * 180.02562 * 15 14 13 40 40 H 1.07996 * 120.05790 * 180.02562 * 16 15 14 41 41 H 0.97005 * 119.99672 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7103 -1.4426 5 1 1.5002 1.8406 -1.9564 6 8 3.2248 0.7143 -2.1161 7 6 3.2170 3.0357 -1.4426 8 6 2.4744 4.2795 -1.9349 9 6 3.5684 3.6485 -2.7997 10 6 2.1389 -1.1672 0.0005 11 8 3.3517 -1.1690 0.0897 12 6 1.4057 -2.4417 -0.1071 13 6 0.3318 -2.7075 0.7383 14 6 -0.3492 -3.9060 0.6380 15 6 0.0215 -4.8543 -0.3059 16 6 1.0742 -4.6176 -1.1597 17 6 1.7840 -3.4054 -1.0782 18 6 2.8638 -3.1535 -1.9474 19 1 3.7127 -2.5819 -1.6024 20 6 2.8362 -3.6448 -3.2609 21 7 3.9276 -3.6520 -3.9787 22 14 1.2387 -4.2891 -3.9838 23 1 1.1431 -5.7521 -3.7477 24 1 0.0908 -3.6067 -3.3343 25 1 1.2124 -4.0206 -5.4441 26 1 -0.3634 0.0542 1.0263 27 1 -0.3634 0.8617 -0.5600 28 1 -0.3633 -0.9158 -0.4662 29 1 1.6084 2.0284 0.5137 30 1 3.1499 1.1385 0.5138 31 1 4.0873 0.5459 -1.7125 32 1 3.9333 3.1653 -0.6312 33 1 1.4411 4.1537 -2.2583 34 1 2.7024 5.2275 -1.4476 35 1 4.5156 4.1815 -2.8812 36 1 3.2553 3.1072 -3.6926 37 1 0.0330 -1.9777 1.4763 38 1 -1.1782 -4.1069 1.3003 39 1 -0.5217 -5.7855 -0.3710 40 1 1.3552 -5.3609 -1.8910 41 1 3.9086 -3.9922 -4.8869 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601301995.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:35 Heat of formation + Delta-G solvation = -36.519334 kcal Electronic energy + Delta-G solvation = -23679.860952 eV Core-core repulsion = 20332.432872 eV Total energy + Delta-G solvation = -3347.428079 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.53696 -38.19476 -36.95842 -35.22232 -34.51273 -33.56704 -30.58540 -30.48955 -28.77342 -26.24298 -25.34092 -23.69937 -22.37722 -21.77680 -20.91949 -20.68058 -18.65987 -17.38418 -16.58653 -16.40600 -15.92588 -15.59079 -15.14405 -14.63129 -14.44610 -14.12716 -13.81332 -13.54041 -13.34551 -12.70474 -12.64463 -12.45263 -12.27549 -11.97593 -11.84366 -11.57426 -11.55512 -11.37574 -10.87098 -10.85124 -10.73940 -10.50011 -10.39149 -10.19246 -10.01538 -9.78753 -9.71174 -9.18610 -8.67545 -7.97354 -7.73914 -7.61337 -6.91607 -4.47857 2.27641 2.63320 3.10291 3.19162 3.29790 3.51515 3.75247 3.90595 3.98499 4.52065 4.63541 4.79301 4.89372 5.11024 5.14911 5.37347 5.39032 5.48023 5.54298 5.58010 5.74436 5.80790 5.83316 5.88081 5.95638 6.04371 6.06936 6.12823 6.16740 6.32195 6.41371 6.57916 6.83262 7.06675 7.14098 7.29029 7.47407 7.61730 7.80709 8.04552 8.14087 8.21909 8.47527 8.65001 8.84600 9.20301 10.08558 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015658 B = 0.006321 C = 0.005063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.832144 B = 4428.836803 C = 5529.065861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.620 5.620 3 C 0.091 3.909 4 C 0.121 3.879 5 H 0.091 0.909 6 O -0.536 6.536 7 C -0.189 4.189 8 C -0.177 4.177 9 C -0.165 4.165 10 C 0.595 3.405 11 O -0.542 6.542 12 C -0.242 4.242 13 C -0.047 4.047 14 C -0.255 4.255 15 C -0.066 4.066 16 C -0.233 4.233 17 C 0.124 3.876 18 C -0.421 4.421 19 H 0.113 0.887 20 C 0.085 3.915 21 N -0.793 5.793 22 Si 0.909 3.091 23 H -0.269 1.269 24 H -0.245 1.245 25 H -0.290 1.290 26 H 0.046 0.954 27 H 0.055 0.945 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.378 0.622 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.104 0.896 41 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.074 10.915 3.459 12.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.354 5.354 3 C -0.033 4.033 4 C 0.060 3.940 5 H 0.108 0.892 6 O -0.341 6.341 7 C -0.208 4.208 8 C -0.214 4.214 9 C -0.202 4.202 10 C 0.388 3.612 11 O -0.419 6.419 12 C -0.246 4.246 13 C -0.066 4.066 14 C -0.275 4.275 15 C -0.084 4.084 16 C -0.252 4.252 17 C 0.120 3.880 18 C -0.448 4.448 19 H 0.131 0.869 20 C -0.136 4.136 21 N -0.416 5.416 22 Si 0.735 3.265 23 H -0.195 1.195 24 H -0.168 1.168 25 H -0.217 1.217 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.104 0.896 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.226 0.774 32 H 0.123 0.877 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.117 0.883 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.113 0.887 40 H 0.122 0.878 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.740 10.864 2.888 12.622 hybrid contribution -0.258 -0.186 -0.049 0.322 sum -5.997 10.678 2.839 12.572 Atomic orbital electron populations 1.21822 0.80348 1.03405 1.00536 1.47634 1.06361 1.05349 1.76060 1.21979 0.98470 0.85955 0.96874 1.21823 0.94043 0.84997 0.93158 0.89159 1.86684 1.33636 1.58184 1.55619 1.23091 1.03840 0.94895 0.99018 1.22938 0.97616 0.96402 1.04454 1.22834 0.99414 1.03126 0.94823 1.18270 0.86675 0.83024 0.73272 1.90618 1.14406 1.87241 1.49653 1.19389 1.02024 0.95315 1.07880 1.20764 0.93398 0.96107 0.96342 1.20255 1.05157 0.96868 1.05180 1.20718 0.95539 0.97252 0.94925 1.21097 1.01801 0.98099 1.04172 1.17453 0.90501 0.89017 0.91060 1.19866 1.03167 1.27030 0.94782 0.86911 1.26284 0.97796 0.92026 0.97485 1.69589 1.28774 1.33035 1.10205 0.86372 0.83346 0.79803 0.76986 1.19476 1.16799 1.21714 0.93591 0.92618 0.89613 0.90723 0.89884 0.77366 0.87736 0.88830 0.88975 0.88998 0.88314 0.88460 0.88605 0.88691 0.87779 0.90356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.22 9.13 59.84 0.55 1.77 16 2 N -0.62 -11.14 2.83 -182.85 -0.52 -11.66 16 3 C 0.09 1.36 5.17 -4.04 -0.02 1.34 16 4 C 0.12 1.81 3.43 -26.73 -0.09 1.71 16 5 H 0.09 1.36 7.90 -51.93 -0.41 0.95 16 6 O -0.54 -10.43 12.17 -37.23 -0.45 -10.88 16 7 C -0.19 -2.27 5.36 -90.62 -0.49 -2.75 16 8 C -0.18 -1.79 10.18 -26.69 -0.27 -2.06 16 9 C -0.16 -1.91 10.16 -26.70 -0.27 -2.18 16 10 C 0.59 13.50 6.13 -12.51 -0.08 13.42 16 11 O -0.54 -13.75 13.97 3.27 0.05 -13.70 16 12 C -0.24 -5.71 4.89 -104.36 -0.51 -6.22 16 13 C -0.05 -0.97 7.64 -39.22 -0.30 -1.27 16 14 C -0.26 -5.08 10.03 -39.37 -0.39 -5.47 16 15 C -0.07 -1.39 10.01 -39.60 -0.40 -1.79 16 16 C -0.23 -5.59 7.13 -38.89 -0.28 -5.86 16 17 C 0.12 3.21 5.06 -106.55 -0.54 2.68 16 18 C -0.42 -11.81 8.85 -37.82 -0.33 -12.15 16 19 H 0.11 3.49 6.39 -52.49 -0.34 3.16 16 20 C 0.08 2.27 5.45 -17.30 -0.09 2.17 16 21 N -0.79 -21.58 13.92 55.56 0.77 -20.81 16 22 Si 0.91 20.96 24.54 -169.99 -4.17 16.79 16 23 H -0.27 -5.94 6.66 56.52 0.38 -5.56 16 24 H -0.24 -5.74 6.89 56.52 0.39 -5.35 16 25 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 26 H 0.05 0.58 7.63 -51.93 -0.40 0.18 16 27 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 28 H 0.09 1.44 5.72 -51.93 -0.30 1.15 16 29 H 0.07 0.88 8.07 -51.93 -0.42 0.46 16 30 H 0.08 1.33 7.36 -51.93 -0.38 0.94 16 31 H 0.38 7.15 8.61 45.56 0.39 7.54 16 32 H 0.10 1.17 8.11 -51.93 -0.42 0.75 16 33 H 0.09 0.91 8.05 -51.93 -0.42 0.49 16 34 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.10 1.27 8.14 -51.92 -0.42 0.85 16 37 H 0.10 1.70 6.73 -52.49 -0.35 1.35 16 38 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 39 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 40 H 0.10 2.48 4.92 -52.49 -0.26 2.22 16 41 H 0.29 7.02 8.29 -40.82 -0.34 6.68 16 LS Contribution 333.12 15.07 5.02 5.02 Total: -1.00 -30.65 333.12 -7.82 -38.48 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -5.00 Total: 13.42 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: -3.52 Total: -16.66 kcal Atomic # 7 Polarization: -32.72 SS G_CDS: 0.26 Total: -32.47 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.41 Total: -24.58 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.17 Total: 16.79 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.65 -7.82 -38.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601301995.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.957 kcal (2) G-P(sol) polarization free energy of solvation -30.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds