Wall clock time and date at job start Tue Mar 31 2020 06:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46507 * 120.00138 * 2 1 4 4 C 1.53005 * 109.46844 * 269.99707 * 3 2 1 5 5 H 1.08996 * 109.47033 * 59.99877 * 4 3 2 6 6 O 1.42899 * 109.46839 * 300.00035 * 4 3 2 7 7 C 1.53002 * 109.46879 * 179.97438 * 4 3 2 8 8 C 1.53003 * 117.49576 * 248.74396 * 7 4 3 9 9 C 1.52997 * 117.49644 * 180.08896 * 7 4 3 10 10 C 1.34782 * 120.00297 * 179.97438 * 2 1 3 11 11 O 1.21608 * 120.00052 * 184.85698 * 10 2 1 12 12 C 1.47431 * 119.99597 * 4.85886 * 10 2 1 13 13 C 1.39232 * 120.28335 * 309.15981 * 12 10 2 14 14 C 1.38214 * 120.09486 * 180.28164 * 13 12 10 15 15 C 1.38830 * 120.67106 * 359.69645 * 14 13 12 16 16 C 1.37595 * 120.57346 * 359.97438 * 15 14 13 17 17 C 1.40703 * 119.88333 * 0.02779 * 16 15 14 18 18 C 1.40884 * 120.32974 * 179.97438 * 17 16 15 19 19 H 1.08000 * 120.00177 * 214.16755 * 18 17 16 20 20 C 1.40272 * 120.00061 * 34.17541 * 18 17 16 21 21 N 1.30632 * 119.99870 * 193.80181 * 20 18 17 22 22 Si 1.86803 * 120.00052 * 13.79801 * 20 18 17 23 23 H 1.48501 * 109.46772 * 267.83784 * 22 20 18 24 24 H 1.48497 * 109.46894 * 27.83731 * 22 20 18 25 25 H 1.48500 * 109.47031 * 147.83916 * 22 20 18 26 26 H 1.09004 * 109.47494 * 273.02214 * 1 2 3 27 27 H 1.09004 * 109.47199 * 33.01887 * 1 2 3 28 28 H 1.08996 * 109.47027 * 153.01809 * 1 2 3 29 29 H 1.08995 * 109.47055 * 29.99336 * 3 2 1 30 30 H 1.08996 * 109.47406 * 149.99812 * 3 2 1 31 31 H 0.96703 * 113.99944 * 299.99576 * 6 4 3 32 32 H 1.08999 * 115.55166 * 34.41862 * 7 4 3 33 33 H 1.08998 * 117.50112 * 0.02562 * 8 7 4 34 34 H 1.09000 * 117.49495 * 145.02113 * 8 7 4 35 35 H 1.09000 * 117.50050 * 214.98143 * 9 7 4 36 36 H 1.09010 * 117.49942 * 359.97438 * 9 7 4 37 37 H 1.07998 * 119.95309 * 0.02562 * 13 12 10 38 38 H 1.07998 * 119.66799 * 179.71593 * 14 13 12 39 39 H 1.08006 * 119.71358 * 180.02562 * 15 14 13 40 40 H 1.07996 * 120.05790 * 180.02562 * 16 15 14 41 41 H 0.97005 * 119.99672 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7103 -1.4426 5 1 1.5002 1.8406 -1.9564 6 8 3.2248 0.7143 -2.1161 7 6 3.2170 3.0357 -1.4426 8 6 2.4744 4.2795 -1.9349 9 6 3.5684 3.6485 -2.7997 10 6 2.1389 -1.1672 0.0005 11 8 3.3517 -1.1690 0.0897 12 6 1.4057 -2.4417 -0.1071 13 6 0.3318 -2.7075 0.7383 14 6 -0.3492 -3.9060 0.6380 15 6 0.0215 -4.8543 -0.3059 16 6 1.0742 -4.6176 -1.1597 17 6 1.7840 -3.4054 -1.0782 18 6 2.8638 -3.1535 -1.9474 19 1 3.7127 -2.5819 -1.6024 20 6 2.8362 -3.6448 -3.2609 21 7 3.9276 -3.6520 -3.9787 22 14 1.2387 -4.2891 -3.9838 23 1 1.1431 -5.7521 -3.7477 24 1 0.0908 -3.6067 -3.3343 25 1 1.2124 -4.0206 -5.4441 26 1 -0.3634 0.0542 1.0263 27 1 -0.3634 0.8617 -0.5600 28 1 -0.3633 -0.9158 -0.4662 29 1 1.6084 2.0284 0.5137 30 1 3.1499 1.1385 0.5138 31 1 4.0873 0.5459 -1.7125 32 1 3.9333 3.1653 -0.6312 33 1 1.4411 4.1537 -2.2583 34 1 2.7024 5.2275 -1.4476 35 1 4.5156 4.1815 -2.8812 36 1 3.2553 3.1072 -3.6926 37 1 0.0330 -1.9777 1.4763 38 1 -1.1782 -4.1069 1.3003 39 1 -0.5217 -5.7855 -0.3710 40 1 1.3552 -5.3609 -1.8910 41 1 3.9086 -3.9922 -4.8869 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601301995.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:34 Heat of formation + Delta-G solvation = -57.737424 kcal Electronic energy + Delta-G solvation = -23680.781037 eV Core-core repulsion = 20332.432872 eV Total energy + Delta-G solvation = -3348.348165 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.10803 -39.52973 -38.56330 -36.56413 -36.00997 -35.43635 -32.33601 -32.18445 -30.16541 -27.65871 -27.07183 -25.12527 -23.45749 -23.21972 -22.60641 -21.79360 -20.26355 -19.28388 -18.15879 -17.73626 -17.36836 -17.04573 -16.72457 -15.97078 -15.91331 -15.77112 -15.41076 -15.02686 -14.72901 -14.40001 -14.12763 -13.93172 -13.72979 -13.65202 -13.34616 -13.16399 -12.70154 -12.65957 -12.44166 -12.40584 -12.11655 -12.07478 -11.91678 -11.61383 -11.48142 -11.17791 -11.03561 -10.98445 -10.42594 -9.48668 -9.45176 -9.37054 -8.85653 -6.48813 0.51740 0.84910 1.23024 1.36861 1.45541 1.98008 2.10889 2.36970 2.65956 2.79948 3.49966 3.55193 3.68190 3.92400 3.93693 4.10445 4.20157 4.28084 4.34962 4.39166 4.43663 4.47259 4.60770 4.74218 4.76829 4.78613 4.86816 4.95167 4.98821 5.02150 5.04248 5.24124 5.25790 5.31646 5.48304 5.73390 5.75917 5.88229 6.00257 6.26413 6.43432 6.56202 6.76074 6.79181 6.83949 7.53465 8.21794 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015658 B = 0.006321 C = 0.005063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.832144 B = 4428.836803 C = 5529.065861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.615 5.615 3 C 0.092 3.908 4 C 0.118 3.882 5 H 0.091 0.909 6 O -0.570 6.570 7 C -0.197 4.197 8 C -0.149 4.149 9 C -0.179 4.179 10 C 0.583 3.417 11 O -0.585 6.585 12 C -0.256 4.256 13 C -0.045 4.045 14 C -0.229 4.229 15 C -0.066 4.066 16 C -0.252 4.252 17 C 0.103 3.897 18 C -0.464 4.464 19 H 0.061 0.939 20 C 0.044 3.956 21 N -0.847 5.847 22 Si 0.967 3.033 23 H -0.251 1.251 24 H -0.250 1.250 25 H -0.281 1.281 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.065 0.935 29 H 0.119 0.881 30 H 0.067 0.933 31 H 0.373 0.627 32 H 0.113 0.887 33 H 0.100 0.900 34 H 0.117 0.883 35 H 0.104 0.896 36 H 0.077 0.923 37 H 0.134 0.866 38 H 0.143 0.857 39 H 0.134 0.866 40 H 0.100 0.900 41 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.309 11.938 5.533 16.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.347 5.347 3 C -0.031 4.031 4 C 0.058 3.942 5 H 0.109 0.891 6 O -0.375 6.375 7 C -0.216 4.216 8 C -0.186 4.186 9 C -0.216 4.216 10 C 0.376 3.624 11 O -0.466 6.466 12 C -0.260 4.260 13 C -0.064 4.064 14 C -0.248 4.248 15 C -0.084 4.084 16 C -0.271 4.271 17 C 0.100 3.900 18 C -0.493 4.493 19 H 0.079 0.921 20 C -0.171 4.171 21 N -0.473 5.473 22 Si 0.789 3.211 23 H -0.176 1.176 24 H -0.173 1.173 25 H -0.208 1.208 26 H 0.097 0.903 27 H 0.103 0.897 28 H 0.083 0.917 29 H 0.137 0.863 30 H 0.085 0.915 31 H 0.220 0.780 32 H 0.131 0.869 33 H 0.119 0.881 34 H 0.135 0.865 35 H 0.122 0.878 36 H 0.096 0.904 37 H 0.152 0.848 38 H 0.161 0.839 39 H 0.152 0.848 40 H 0.117 0.883 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.022 11.918 4.977 16.348 hybrid contribution 0.872 -0.416 -0.419 1.054 sum -9.150 11.503 4.558 15.388 Atomic orbital electron populations 1.22075 0.77983 1.03748 1.02921 1.47672 1.07940 1.04928 1.74188 1.22166 0.98391 0.85501 0.97055 1.21984 0.93850 0.85561 0.92786 0.89125 1.86649 1.33761 1.60188 1.56915 1.22927 1.04748 0.94267 0.99631 1.23052 0.97299 0.96050 1.02170 1.22859 1.01042 1.03759 0.93928 1.18383 0.86277 0.84393 0.73380 1.90594 1.16245 1.88017 1.51757 1.19815 1.02920 0.95628 1.07636 1.21166 0.91933 0.97357 0.95909 1.20889 1.04769 0.95315 1.03800 1.21195 0.94408 0.99087 0.93713 1.21204 1.03122 0.97331 1.05448 1.17686 0.90438 0.90363 0.91543 1.19617 1.03573 1.29446 0.96651 0.92103 1.26999 1.00708 0.92146 0.97242 1.69646 1.30547 1.36080 1.10988 0.85499 0.79117 0.80016 0.76449 1.17582 1.17316 1.20770 0.90252 0.89700 0.91666 0.86274 0.91479 0.77968 0.86890 0.88127 0.86505 0.87803 0.90389 0.84804 0.83942 0.84809 0.88269 0.89783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.95 9.13 127.77 1.17 3.12 16 2 N -0.61 -21.47 2.83 -850.65 -2.41 -23.87 16 3 C 0.09 2.64 5.17 86.38 0.45 3.09 16 4 C 0.12 3.54 3.43 30.60 0.11 3.65 16 5 H 0.09 2.66 7.90 -2.39 -0.02 2.64 16 6 O -0.57 -23.94 12.17 -147.07 -1.79 -25.73 16 7 C -0.20 -4.54 5.36 -10.79 -0.06 -4.60 16 8 C -0.15 -2.60 10.18 30.62 0.31 -2.29 16 9 C -0.18 -4.06 10.16 30.62 0.31 -3.75 16 10 C 0.58 27.12 6.13 86.66 0.53 27.66 16 11 O -0.59 -31.76 13.97 -2.15 -0.03 -31.79 16 12 C -0.26 -12.06 4.89 -19.70 -0.10 -12.15 16 13 C -0.05 -1.68 7.64 22.50 0.17 -1.51 16 14 C -0.23 -7.87 10.03 22.41 0.22 -7.64 16 15 C -0.07 -2.52 10.01 22.26 0.22 -2.29 16 16 C -0.25 -11.89 7.13 22.72 0.16 -11.72 16 17 C 0.10 5.50 5.06 -21.11 -0.11 5.40 16 18 C -0.46 -28.06 8.85 23.41 0.21 -27.85 16 19 H 0.06 4.20 6.39 -2.91 -0.02 4.18 16 20 C 0.04 2.48 5.45 85.37 0.46 2.95 16 21 N -0.85 -49.77 13.92 21.88 0.30 -49.46 16 22 Si 0.97 44.46 24.54 68.60 1.68 46.15 16 23 H -0.25 -10.65 6.66 99.48 0.66 -9.99 16 24 H -0.25 -11.46 6.89 99.48 0.69 -10.77 16 25 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 26 H 0.08 1.58 7.63 -2.38 -0.02 1.56 16 27 H 0.08 1.74 8.10 -2.38 -0.02 1.72 16 28 H 0.06 2.00 5.72 -2.39 -0.01 1.99 16 29 H 0.12 2.37 8.07 -2.39 -0.02 2.35 16 30 H 0.07 2.17 7.36 -2.39 -0.02 2.16 16 31 H 0.37 15.86 8.61 -74.06 -0.64 15.23 16 32 H 0.11 2.42 8.11 -2.39 -0.02 2.40 16 33 H 0.10 1.65 8.05 -2.39 -0.02 1.63 16 34 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 37 H 0.13 3.98 6.73 -2.91 -0.02 3.96 16 38 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 39 H 0.13 4.09 8.06 -2.91 -0.02 4.07 16 40 H 0.10 4.70 4.92 -2.91 -0.01 4.69 16 41 H 0.29 15.39 8.29 -92.70 -0.77 14.62 16 Total: -1.00 -74.66 333.12 2.17 -72.49 By element: Atomic # 1 Polarization: 39.84 SS G_CDS: 0.35 Total: 40.18 kcal Atomic # 6 Polarization: -32.02 SS G_CDS: 4.06 Total: -27.96 kcal Atomic # 7 Polarization: -71.23 SS G_CDS: -2.10 Total: -73.33 kcal Atomic # 8 Polarization: -55.70 SS G_CDS: -1.82 Total: -57.52 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 1.68 Total: 46.15 kcal Total: -74.66 2.17 -72.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601301995.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.748 kcal (2) G-P(sol) polarization free energy of solvation -74.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds