Wall clock time and date at job start Tue Mar 31 2020 06:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46499 * 119.99975 * 2 1 4 4 C 1.52999 * 109.47312 * 270.00239 * 3 2 1 5 5 H 1.09007 * 109.47148 * 305.00024 * 4 3 2 6 6 O 1.42896 * 109.47149 * 65.00138 * 4 3 2 7 7 C 1.53004 * 109.47159 * 185.00242 * 4 3 2 8 8 C 1.53003 * 117.49867 * 248.74532 * 7 4 3 9 9 C 1.53000 * 117.49983 * 180.08588 * 7 4 3 10 10 C 1.34773 * 120.00185 * 180.02562 * 2 1 3 11 11 O 1.21608 * 120.00366 * 185.19927 * 10 2 1 12 12 C 1.47436 * 119.99631 * 5.20069 * 10 2 1 13 13 C 1.39226 * 120.28513 * 313.21775 * 12 10 2 14 14 C 1.38217 * 120.08928 * 180.28403 * 13 12 10 15 15 C 1.38823 * 120.67965 * 359.71618 * 14 13 12 16 16 C 1.37595 * 120.56956 * 359.97438 * 15 14 13 17 17 C 1.40702 * 119.88133 * 0.02562 * 16 15 14 18 18 C 1.40892 * 120.32612 * 180.02562 * 17 16 15 19 19 H 1.08005 * 120.00042 * 149.52693 * 18 17 16 20 20 C 1.40269 * 120.00196 * 329.52986 * 18 17 16 21 21 N 1.30629 * 119.99666 * 336.33757 * 20 18 17 22 22 Si 1.86800 * 120.00230 * 156.33821 * 20 18 17 23 23 H 1.48504 * 109.46997 * 270.00106 * 22 20 18 24 24 H 1.48502 * 109.46919 * 29.99775 * 22 20 18 25 25 H 1.48493 * 109.47282 * 150.00146 * 22 20 18 26 26 H 1.09002 * 109.47107 * 265.75213 * 1 2 3 27 27 H 1.09003 * 109.46948 * 25.74812 * 1 2 3 28 28 H 1.09001 * 109.47338 * 145.75167 * 1 2 3 29 29 H 1.09004 * 109.47322 * 30.00174 * 3 2 1 30 30 H 1.09000 * 109.47283 * 150.00241 * 3 2 1 31 31 H 0.96701 * 114.00104 * 60.00134 * 6 4 3 32 32 H 1.09003 * 115.55064 * 34.41511 * 7 4 3 33 33 H 1.09007 * 117.49595 * 0.02562 * 8 7 4 34 34 H 1.08997 * 117.49660 * 145.01619 * 8 7 4 35 35 H 1.08993 * 117.50137 * 214.97676 * 9 7 4 36 36 H 1.09004 * 117.49635 * 359.97438 * 9 7 4 37 37 H 1.08002 * 119.94937 * 359.97438 * 13 12 10 38 38 H 1.08005 * 119.65636 * 179.73341 * 14 13 12 39 39 H 1.08000 * 119.71585 * 180.02562 * 15 14 13 40 40 H 1.08002 * 120.05793 * 180.02562 * 16 15 14 41 41 H 0.96994 * 120.00258 * 354.08122 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7105 -1.4425 5 1 2.9642 0.9131 -1.9816 6 8 1.2060 1.9936 -2.0813 7 6 3.3238 2.9681 -1.4443 8 6 2.6748 4.2766 -1.9001 9 6 3.6911 3.5712 -2.8016 10 6 2.1389 -1.1671 -0.0005 11 8 3.3512 -1.1694 0.0949 12 6 1.4062 -2.4413 -0.1168 13 6 0.2770 -2.6756 0.6632 14 6 -0.4033 -3.8739 0.5551 15 6 0.0232 -4.8531 -0.3317 16 6 1.1319 -4.6481 -1.1203 17 6 1.8424 -3.4370 -1.0297 18 6 2.9786 -3.2170 -1.8332 19 1 3.2301 -2.2156 -2.1501 20 6 3.7831 -4.2984 -2.2215 21 7 3.7891 -5.3956 -1.5127 22 14 4.8459 -4.1695 -3.7523 23 1 4.0753 -4.6406 -4.9311 24 1 5.2489 -2.7550 -3.9574 25 1 6.0584 -5.0104 -3.5854 26 1 -0.3633 -0.0761 1.0249 27 1 -0.3633 0.9257 -0.4465 28 1 -0.3634 -0.8495 -0.5783 29 1 1.6084 2.0284 0.5139 30 1 3.1499 1.1384 0.5138 31 1 0.6955 2.6951 -1.6541 32 1 4.0682 3.0255 -0.6500 33 1 1.6269 4.2414 -2.1982 34 1 2.9924 5.1947 -1.4059 35 1 4.6768 4.0256 -2.9003 36 1 3.3123 3.0717 -3.6933 37 1 -0.0647 -1.9220 1.3572 38 1 -1.2759 -4.0500 1.1667 39 1 -0.5204 -5.7836 -0.4038 40 1 1.4562 -5.4154 -1.8077 41 1 3.3054 -5.4331 -0.6728 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601301996.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:38 Heat of formation + Delta-G solvation = -43.978269 kcal Electronic energy + Delta-G solvation = -23419.596348 eV Core-core repulsion = 20071.844825 eV Total energy + Delta-G solvation = -3347.751523 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.64531 -38.52511 -36.99866 -35.29346 -34.47700 -33.80836 -30.71374 -29.57408 -28.88234 -26.14488 -25.28809 -24.02038 -22.52390 -21.59512 -20.97447 -20.51379 -18.88932 -17.71766 -16.83248 -16.44142 -16.00083 -15.54793 -15.03225 -14.78511 -14.49902 -14.23297 -13.95694 -13.47887 -13.18722 -12.57560 -12.54208 -12.48611 -12.16227 -11.99352 -11.85227 -11.60683 -11.51771 -11.22738 -11.20446 -10.90258 -10.73627 -10.59617 -10.40130 -10.23835 -10.06096 -10.04574 -9.55199 -9.03877 -8.73220 -8.02114 -7.72994 -7.64070 -7.21238 -4.48052 2.38214 2.74901 3.17891 3.28822 3.37884 3.51582 3.68356 3.88737 4.02405 4.40619 4.55458 4.64576 4.82965 4.87701 5.11864 5.28069 5.37335 5.41607 5.51982 5.56677 5.72620 5.77107 5.79854 5.98412 6.01023 6.06038 6.08310 6.14587 6.20430 6.24201 6.46918 6.78564 7.00781 7.07843 7.28755 7.52753 7.61247 7.67376 7.73276 7.83818 8.00732 8.18849 8.20464 8.68090 8.79954 9.17665 10.01729 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013715 B = 0.006054 C = 0.004543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.002830 B = 4623.720910 C = 6162.514204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.622 5.622 3 C 0.094 3.906 4 C 0.120 3.880 5 H 0.108 0.892 6 O -0.551 6.551 7 C -0.187 4.187 8 C -0.180 4.180 9 C -0.169 4.169 10 C 0.581 3.419 11 O -0.539 6.539 12 C -0.258 4.258 13 C -0.048 4.048 14 C -0.262 4.262 15 C -0.073 4.073 16 C -0.209 4.209 17 C 0.128 3.872 18 C -0.483 4.483 19 H 0.079 0.921 20 C 0.039 3.961 21 N -0.787 5.787 22 Si 1.068 2.932 23 H -0.273 1.273 24 H -0.275 1.275 25 H -0.275 1.275 26 H 0.043 0.957 27 H 0.060 0.940 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.364 0.636 32 H 0.111 0.889 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.107 0.893 41 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.370 13.746 0.157 14.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.356 5.356 3 C -0.030 4.030 4 C 0.060 3.940 5 H 0.126 0.874 6 O -0.356 6.356 7 C -0.206 4.206 8 C -0.216 4.216 9 C -0.206 4.206 10 C 0.374 3.626 11 O -0.415 6.415 12 C -0.262 4.262 13 C -0.066 4.066 14 C -0.281 4.281 15 C -0.092 4.092 16 C -0.228 4.228 17 C 0.124 3.876 18 C -0.510 4.510 19 H 0.097 0.903 20 C -0.184 4.184 21 N -0.409 5.409 22 Si 0.891 3.109 23 H -0.199 1.199 24 H -0.200 1.200 25 H -0.200 1.200 26 H 0.061 0.939 27 H 0.079 0.921 28 H 0.098 0.902 29 H 0.089 0.911 30 H 0.107 0.893 31 H 0.211 0.789 32 H 0.129 0.871 33 H 0.116 0.884 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.125 0.875 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.459 12.349 -1.110 12.640 hybrid contribution -1.348 1.336 1.541 2.445 sum -3.807 13.684 0.431 14.211 Atomic orbital electron populations 1.21799 0.80103 1.02989 1.00432 1.47764 1.06617 1.05143 1.76098 1.21913 0.98731 0.86093 0.96300 1.21949 0.83509 0.94514 0.94010 0.87413 1.86685 1.32520 1.59483 1.56952 1.23097 1.03460 0.94562 0.99488 1.22942 0.99035 0.95269 1.04396 1.22896 0.99613 1.03616 0.94475 1.18527 0.86861 0.83249 0.73974 1.90680 1.14314 1.87212 1.49336 1.19346 1.02529 0.97327 1.07028 1.20799 0.93196 0.96067 0.96568 1.20218 1.04231 0.96389 1.07307 1.20720 0.95941 0.96967 0.95558 1.21158 0.98018 0.99723 1.03931 1.17390 0.91916 0.89852 0.88466 1.20627 1.07387 0.97332 1.25614 0.90295 1.27106 0.97535 0.91140 1.02578 1.70338 1.31031 1.27766 1.11777 0.83596 0.76215 0.77113 0.73944 1.19908 1.19960 1.19994 0.93866 0.92096 0.90221 0.91129 0.89272 0.78854 0.87144 0.88384 0.89024 0.88998 0.88391 0.88633 0.88952 0.88966 0.87526 0.88621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.36 8.80 59.85 0.53 1.89 16 2 N -0.62 -11.31 2.84 -182.84 -0.52 -11.83 16 3 C 0.09 1.39 5.07 -4.04 -0.02 1.37 16 4 C 0.12 1.74 3.57 -26.73 -0.10 1.64 16 5 H 0.11 1.99 8.14 -51.92 -0.42 1.57 16 6 O -0.55 -7.45 11.40 -35.23 -0.40 -7.85 16 7 C -0.19 -2.17 5.71 -90.62 -0.52 -2.69 16 8 C -0.18 -1.68 9.74 -26.69 -0.26 -1.94 16 9 C -0.17 -1.86 10.19 -26.69 -0.27 -2.13 16 10 C 0.58 13.64 6.60 -12.52 -0.08 13.56 16 11 O -0.54 -14.39 15.27 5.27 0.08 -14.31 16 12 C -0.26 -6.33 5.03 -104.36 -0.53 -6.86 16 13 C -0.05 -1.02 7.68 -39.22 -0.30 -1.33 16 14 C -0.26 -5.55 10.03 -39.37 -0.39 -5.95 16 15 C -0.07 -1.63 10.01 -39.60 -0.40 -2.03 16 16 C -0.21 -5.26 7.97 -38.89 -0.31 -5.57 16 17 C 0.13 3.42 5.21 -106.54 -0.56 2.86 16 18 C -0.48 -13.31 7.73 -37.81 -0.29 -13.60 16 19 H 0.08 2.25 7.14 -52.48 -0.37 1.88 16 20 C 0.04 1.03 4.95 -17.30 -0.09 0.94 16 21 N -0.79 -21.29 12.46 55.56 0.69 -20.60 16 22 Si 1.07 22.62 30.00 -169.99 -5.10 17.52 16 23 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 24 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 25 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 26 H 0.04 0.58 7.07 -51.93 -0.37 0.22 16 27 H 0.06 0.75 7.20 -51.93 -0.37 0.37 16 28 H 0.08 1.38 6.08 -51.93 -0.32 1.06 16 29 H 0.07 0.81 8.07 -51.93 -0.42 0.39 16 30 H 0.09 1.45 7.36 -51.93 -0.38 1.07 16 31 H 0.36 3.44 7.55 45.56 0.34 3.78 16 32 H 0.11 1.23 8.11 -51.93 -0.42 0.81 16 33 H 0.10 0.85 6.37 -51.93 -0.33 0.52 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.10 1.78 6.08 -52.49 -0.32 1.46 16 38 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16 39 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 40 H 0.11 2.74 6.82 -52.49 -0.36 2.38 16 41 H 0.30 8.37 6.79 -40.82 -0.28 8.09 16 LS Contribution 334.90 15.07 5.05 5.05 Total: -1.00 -30.98 334.90 -8.71 -39.69 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -4.93 Total: 12.16 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: -3.58 Total: -19.82 kcal Atomic # 7 Polarization: -32.61 SS G_CDS: 0.17 Total: -32.43 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -0.32 Total: -22.16 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.10 Total: 17.52 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.98 -8.71 -39.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601301996.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.288 kcal (2) G-P(sol) polarization free energy of solvation -30.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds