Wall clock time and date at job start Tue Mar 31 2020 06:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46499 * 119.99975 * 2 1 4 4 C 1.52999 * 109.47312 * 270.00239 * 3 2 1 5 5 H 1.09007 * 109.47148 * 305.00024 * 4 3 2 6 6 O 1.42896 * 109.47149 * 65.00138 * 4 3 2 7 7 C 1.53004 * 109.47159 * 185.00242 * 4 3 2 8 8 C 1.53003 * 117.49867 * 248.74532 * 7 4 3 9 9 C 1.53000 * 117.49983 * 180.08588 * 7 4 3 10 10 C 1.34773 * 120.00185 * 180.02562 * 2 1 3 11 11 O 1.21608 * 120.00366 * 185.19927 * 10 2 1 12 12 C 1.47436 * 119.99631 * 5.20069 * 10 2 1 13 13 C 1.39226 * 120.28513 * 313.21775 * 12 10 2 14 14 C 1.38217 * 120.08928 * 180.28403 * 13 12 10 15 15 C 1.38823 * 120.67965 * 359.71618 * 14 13 12 16 16 C 1.37595 * 120.56956 * 359.97438 * 15 14 13 17 17 C 1.40702 * 119.88133 * 0.02562 * 16 15 14 18 18 C 1.40892 * 120.32612 * 180.02562 * 17 16 15 19 19 H 1.08005 * 120.00042 * 149.52693 * 18 17 16 20 20 C 1.40269 * 120.00196 * 329.52986 * 18 17 16 21 21 N 1.30629 * 119.99666 * 336.33757 * 20 18 17 22 22 Si 1.86800 * 120.00230 * 156.33821 * 20 18 17 23 23 H 1.48504 * 109.46997 * 270.00106 * 22 20 18 24 24 H 1.48502 * 109.46919 * 29.99775 * 22 20 18 25 25 H 1.48493 * 109.47282 * 150.00146 * 22 20 18 26 26 H 1.09002 * 109.47107 * 265.75213 * 1 2 3 27 27 H 1.09003 * 109.46948 * 25.74812 * 1 2 3 28 28 H 1.09001 * 109.47338 * 145.75167 * 1 2 3 29 29 H 1.09004 * 109.47322 * 30.00174 * 3 2 1 30 30 H 1.09000 * 109.47283 * 150.00241 * 3 2 1 31 31 H 0.96701 * 114.00104 * 60.00134 * 6 4 3 32 32 H 1.09003 * 115.55064 * 34.41511 * 7 4 3 33 33 H 1.09007 * 117.49595 * 0.02562 * 8 7 4 34 34 H 1.08997 * 117.49660 * 145.01619 * 8 7 4 35 35 H 1.08993 * 117.50137 * 214.97676 * 9 7 4 36 36 H 1.09004 * 117.49635 * 359.97438 * 9 7 4 37 37 H 1.08002 * 119.94937 * 359.97438 * 13 12 10 38 38 H 1.08005 * 119.65636 * 179.73341 * 14 13 12 39 39 H 1.08000 * 119.71585 * 180.02562 * 15 14 13 40 40 H 1.08002 * 120.05793 * 180.02562 * 16 15 14 41 41 H 0.96994 * 120.00258 * 354.08122 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7105 -1.4425 5 1 2.9642 0.9131 -1.9816 6 8 1.2060 1.9936 -2.0813 7 6 3.3238 2.9681 -1.4443 8 6 2.6748 4.2766 -1.9001 9 6 3.6911 3.5712 -2.8016 10 6 2.1389 -1.1671 -0.0005 11 8 3.3512 -1.1694 0.0949 12 6 1.4062 -2.4413 -0.1168 13 6 0.2770 -2.6756 0.6632 14 6 -0.4033 -3.8739 0.5551 15 6 0.0232 -4.8531 -0.3317 16 6 1.1319 -4.6481 -1.1203 17 6 1.8424 -3.4370 -1.0297 18 6 2.9786 -3.2170 -1.8332 19 1 3.2301 -2.2156 -2.1501 20 6 3.7831 -4.2984 -2.2215 21 7 3.7891 -5.3956 -1.5127 22 14 4.8459 -4.1695 -3.7523 23 1 4.0753 -4.6406 -4.9311 24 1 5.2489 -2.7550 -3.9574 25 1 6.0584 -5.0104 -3.5854 26 1 -0.3633 -0.0761 1.0249 27 1 -0.3633 0.9257 -0.4465 28 1 -0.3634 -0.8495 -0.5783 29 1 1.6084 2.0284 0.5139 30 1 3.1499 1.1384 0.5138 31 1 0.6955 2.6951 -1.6541 32 1 4.0682 3.0255 -0.6500 33 1 1.6269 4.2414 -2.1982 34 1 2.9924 5.1947 -1.4059 35 1 4.6768 4.0256 -2.9003 36 1 3.3123 3.0717 -3.6933 37 1 -0.0647 -1.9220 1.3572 38 1 -1.2759 -4.0500 1.1667 39 1 -0.5204 -5.7836 -0.4038 40 1 1.4562 -5.4154 -1.8077 41 1 3.3054 -5.4331 -0.6728 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601301996.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:38 Heat of formation + Delta-G solvation = -64.016235 kcal Electronic energy + Delta-G solvation = -23420.465259 eV Core-core repulsion = 20071.844825 eV Total energy + Delta-G solvation = -3348.620434 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.20286 -39.81054 -38.74083 -36.63104 -35.93048 -35.52402 -32.31776 -31.41475 -30.35662 -27.61535 -27.07444 -25.43205 -23.47737 -23.15582 -22.80121 -21.51574 -20.59733 -19.56142 -18.07891 -17.86058 -17.18341 -17.10793 -16.68189 -16.22308 -16.07350 -15.73074 -15.63237 -14.82050 -14.62227 -14.36712 -14.16020 -13.97303 -13.70166 -13.52288 -13.21684 -13.08249 -12.82711 -12.57110 -12.50166 -12.38144 -12.32452 -12.08457 -11.88912 -11.52416 -11.42710 -11.24801 -11.03577 -10.95966 -10.54350 -9.64036 -9.54507 -9.45766 -9.18723 -6.51153 0.52455 0.89211 1.41013 1.57119 1.70786 1.93245 2.25217 2.26645 2.64144 2.79801 3.37581 3.48274 3.62105 3.87176 3.90281 4.03279 4.17399 4.24775 4.29266 4.35482 4.40889 4.46694 4.63119 4.73485 4.75867 4.79096 4.90344 4.94374 4.98628 5.01294 5.12675 5.17943 5.25285 5.36461 5.58807 5.70143 5.73267 5.79818 5.91956 6.12665 6.31590 6.48642 6.74769 6.80807 6.82744 7.43013 7.97360 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013715 B = 0.006054 C = 0.004543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.002830 B = 4623.720910 C = 6162.514204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.613 5.613 3 C 0.092 3.908 4 C 0.132 3.868 5 H 0.051 0.949 6 O -0.562 6.562 7 C -0.199 4.199 8 C -0.147 4.147 9 C -0.184 4.184 10 C 0.571 3.429 11 O -0.588 6.588 12 C -0.274 4.274 13 C -0.045 4.045 14 C -0.243 4.243 15 C -0.072 4.072 16 C -0.231 4.231 17 C 0.101 3.899 18 C -0.524 4.524 19 H 0.050 0.950 20 C 0.005 3.995 21 N -0.809 5.809 22 Si 1.112 2.888 23 H -0.252 1.252 24 H -0.276 1.276 25 H -0.264 1.264 26 H 0.071 0.929 27 H 0.096 0.904 28 H 0.056 0.944 29 H 0.120 0.880 30 H 0.069 0.931 31 H 0.386 0.614 32 H 0.114 0.886 33 H 0.110 0.890 34 H 0.115 0.885 35 H 0.103 0.897 36 H 0.080 0.920 37 H 0.133 0.867 38 H 0.136 0.864 39 H 0.124 0.876 40 H 0.089 0.911 41 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.038 15.960 1.260 17.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.345 5.345 3 C -0.031 4.031 4 C 0.072 3.928 5 H 0.069 0.931 6 O -0.370 6.370 7 C -0.218 4.218 8 C -0.184 4.184 9 C -0.221 4.221 10 C 0.363 3.637 11 O -0.469 6.469 12 C -0.278 4.278 13 C -0.063 4.063 14 C -0.262 4.262 15 C -0.091 4.091 16 C -0.250 4.250 17 C 0.097 3.903 18 C -0.552 4.552 19 H 0.068 0.932 20 C -0.212 4.212 21 N -0.432 5.432 22 Si 0.929 3.071 23 H -0.177 1.177 24 H -0.201 1.201 25 H -0.189 1.189 26 H 0.089 0.911 27 H 0.114 0.886 28 H 0.075 0.925 29 H 0.138 0.862 30 H 0.088 0.912 31 H 0.236 0.764 32 H 0.132 0.868 33 H 0.128 0.872 34 H 0.133 0.867 35 H 0.121 0.879 36 H 0.099 0.901 37 H 0.150 0.850 38 H 0.154 0.846 39 H 0.142 0.858 40 H 0.108 0.892 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.199 14.604 0.005 15.502 hybrid contribution -0.785 0.775 1.346 1.740 sum -5.984 15.379 1.350 16.557 Atomic orbital electron populations 1.22032 0.77726 1.03930 1.02076 1.47751 1.08152 1.04721 1.73890 1.22157 0.98511 0.85465 0.96919 1.21501 0.84178 0.94469 0.92664 0.93074 1.86649 1.32335 1.60678 1.57340 1.22941 1.04090 0.94633 1.00181 1.23065 0.99113 0.94391 1.01813 1.22950 1.01136 1.04386 0.93628 1.18574 0.86360 0.84677 0.74039 1.90641 1.16304 1.88100 1.51829 1.19749 1.03525 0.97700 1.06825 1.21179 0.91878 0.97236 0.96022 1.20781 1.04499 0.95117 1.05836 1.21122 0.94752 0.98632 0.94551 1.21127 0.99512 0.99166 1.05242 1.17762 0.92101 0.91323 0.89112 1.20541 1.09413 0.96377 1.28868 0.93158 1.28357 0.97908 0.90457 1.04451 1.70455 1.32497 1.28541 1.11700 0.83079 0.75346 0.77141 0.71498 1.17658 1.20081 1.18866 0.91101 0.88578 0.92504 0.86241 0.91222 0.76364 0.86770 0.87194 0.86699 0.87885 0.90126 0.84978 0.84572 0.85791 0.89249 0.90516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.28 8.80 127.77 1.12 3.40 16 2 N -0.61 -21.83 2.84 -850.65 -2.41 -24.24 16 3 C 0.09 2.64 5.07 86.38 0.44 3.08 16 4 C 0.13 3.83 3.57 30.60 0.11 3.94 16 5 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 6 O -0.56 -14.28 11.40 -148.98 -1.70 -15.98 16 7 C -0.20 -4.43 5.71 -10.79 -0.06 -4.49 16 8 C -0.15 -2.28 9.74 30.62 0.30 -1.99 16 9 C -0.18 -3.90 10.19 30.62 0.31 -3.58 16 10 C 0.57 27.67 6.60 86.67 0.57 28.24 16 11 O -0.59 -33.43 15.27 -4.06 -0.06 -33.49 16 12 C -0.27 -13.67 5.03 -19.70 -0.10 -13.77 16 13 C -0.04 -1.82 7.68 22.50 0.17 -1.65 16 14 C -0.24 -9.45 10.03 22.40 0.22 -9.22 16 15 C -0.07 -3.11 10.01 22.26 0.22 -2.89 16 16 C -0.23 -11.98 7.97 22.72 0.18 -11.80 16 17 C 0.10 5.64 5.21 -21.11 -0.11 5.53 16 18 C -0.52 -31.10 7.73 23.41 0.18 -30.92 16 19 H 0.05 3.16 7.14 -2.91 -0.02 3.14 16 20 C 0.00 0.27 4.95 85.37 0.42 0.69 16 21 N -0.81 -46.38 12.46 21.88 0.27 -46.11 16 22 Si 1.11 48.08 30.00 68.60 2.06 50.14 16 23 H -0.25 -9.94 7.11 99.48 0.71 -9.24 16 24 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 25 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 26 H 0.07 1.57 7.07 -2.39 -0.02 1.55 16 27 H 0.10 1.93 7.20 -2.39 -0.02 1.92 16 28 H 0.06 1.83 6.08 -2.39 -0.01 1.82 16 29 H 0.12 2.27 8.07 -2.38 -0.02 2.25 16 30 H 0.07 2.31 7.36 -2.39 -0.02 2.29 16 31 H 0.39 5.82 7.55 -74.06 -0.56 5.26 16 32 H 0.11 2.45 8.11 -2.39 -0.02 2.43 16 33 H 0.11 1.46 6.37 -2.38 -0.02 1.44 16 34 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.13 4.37 6.08 -2.91 -0.02 4.35 16 38 H 0.14 4.18 8.06 -2.91 -0.02 4.15 16 39 H 0.12 4.50 8.06 -2.91 -0.02 4.48 16 40 H 0.09 4.85 6.82 -2.91 -0.02 4.83 16 41 H 0.28 16.84 6.79 -92.71 -0.63 16.21 16 Total: -1.00 -74.97 334.90 2.77 -72.20 By element: Atomic # 1 Polarization: 32.27 SS G_CDS: 0.63 Total: 32.90 kcal Atomic # 6 Polarization: -39.41 SS G_CDS: 3.99 Total: -35.42 kcal Atomic # 7 Polarization: -68.21 SS G_CDS: -2.14 Total: -70.35 kcal Atomic # 8 Polarization: -47.71 SS G_CDS: -1.76 Total: -49.47 kcal Atomic # 14 Polarization: 48.08 SS G_CDS: 2.06 Total: 50.14 kcal Total: -74.97 2.77 -72.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601301996.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.183 kcal (2) G-P(sol) polarization free energy of solvation -74.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds