Wall clock time and date at job start Tue Mar 31 2020 06:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42907 * 114.00037 * 2 1 4 4 C 1.53005 * 112.84423 * 64.68174 * 3 2 1 5 5 N 1.46497 * 109.47216 * 48.65204 * 4 3 2 6 6 C 1.34779 * 119.99913 * 185.03544 * 5 4 3 7 7 O 1.21616 * 119.99981 * 0.02562 * 6 5 4 8 8 C 1.47432 * 120.00104 * 180.02562 * 6 5 4 9 9 C 1.39222 * 120.28014 * 354.05364 * 8 6 5 10 10 C 1.38219 * 120.08896 * 180.29936 * 9 8 6 11 11 C 1.38822 * 120.67667 * 359.43836 * 10 9 8 12 12 C 1.37599 * 120.56858 * 0.56361 * 11 10 9 13 13 C 1.40703 * 119.88368 * 359.72242 * 12 11 10 14 14 C 1.40884 * 120.32793 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99791 * 143.82414 * 14 13 12 16 16 C 1.40272 * 120.00066 * 323.82262 * 14 13 12 17 17 N 1.30628 * 119.99841 * 351.06996 * 16 14 13 18 18 Si 1.86798 * 119.99916 * 171.07278 * 16 14 13 19 19 H 1.48500 * 109.47254 * 59.99908 * 18 16 14 20 20 H 1.48506 * 109.47047 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47114 * 299.99592 * 18 16 14 22 22 C 1.53775 * 113.69220 * 195.94559 * 3 2 1 23 23 C 1.53785 * 87.07973 * 89.13032 * 22 3 2 24 24 C 1.53777 * 87.08049 * 25.43182 * 23 22 3 25 25 H 1.09004 * 109.46740 * 301.60072 * 1 2 3 26 26 H 1.09003 * 109.46902 * 61.59573 * 1 2 3 27 27 H 1.08997 * 109.47179 * 181.59480 * 1 2 3 28 28 H 1.09001 * 109.47277 * 288.65148 * 4 3 2 29 29 H 1.09003 * 109.46696 * 168.65611 * 4 3 2 30 30 H 0.96993 * 120.00010 * 5.04564 * 5 4 3 31 31 H 1.08000 * 119.95551 * 0.02562 * 9 8 6 32 32 H 1.08005 * 119.65996 * 179.70539 * 10 9 8 33 33 H 1.07999 * 119.71866 * 180.30630 * 11 10 9 34 34 H 1.08005 * 120.05826 * 179.74442 * 12 11 10 35 35 H 0.97008 * 119.99236 * 180.02562 * 17 16 14 36 36 H 1.08995 * 113.61892 * 203.67653 * 22 3 2 37 37 H 1.08999 * 113.61429 * 334.58534 * 22 3 2 38 38 H 1.09007 * 113.61342 * 270.88436 * 23 22 3 39 39 H 1.08992 * 113.69124 * 139.99210 * 23 22 3 40 40 H 1.09000 * 113.61734 * 220.01598 * 24 23 22 41 41 H 1.09003 * 113.61598 * 89.11149 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.7011 2.0934 1.2746 5 7 1.9782 1.2571 2.4450 6 6 1.6822 1.7075 3.6804 7 8 1.1847 2.8080 3.8234 8 6 1.9616 0.8661 4.8584 9 6 2.4151 -0.4402 4.6964 10 6 2.6699 -1.2275 5.8034 11 6 2.4896 -0.7266 7.0855 12 6 2.0425 0.5605 7.2774 13 6 1.7702 1.3809 6.1673 14 6 1.3125 2.7004 6.3530 15 1 1.6331 3.4827 5.6809 16 6 0.4405 2.9980 7.4106 17 7 -0.0849 2.0318 8.1154 18 14 0.0307 4.7759 7.8112 19 1 -0.6052 5.4152 6.6313 20 1 -0.9061 4.8206 8.9626 21 1 1.2770 5.5052 8.1578 22 6 3.4986 1.3193 -0.3869 23 6 3.0369 1.4670 -1.8463 24 6 1.7479 2.0967 -1.2923 25 1 -0.3633 0.5385 0.8753 26 1 -0.3633 0.4889 -0.9040 27 1 -0.3633 -1.0272 0.0286 28 1 0.6505 2.3841 1.2762 29 1 2.3251 2.9864 1.3100 30 1 2.3748 0.3793 2.3310 31 1 2.5637 -0.8403 3.7043 32 1 3.0169 -2.2415 5.6697 33 1 2.6981 -1.3538 7.9396 34 1 1.9012 0.9405 8.2785 35 1 -0.6883 2.2377 8.8466 36 1 4.0397 2.1872 -0.0102 37 1 4.0111 0.3789 -0.1842 38 1 2.8754 0.5148 -2.3517 39 1 3.6446 2.1583 -2.4300 40 1 0.8472 1.7840 -1.8205 41 1 1.8104 3.1772 -1.1629 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601416530.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:57 Heat of formation + Delta-G solvation = -39.944688 kcal Electronic energy + Delta-G solvation = -23126.272001 eV Core-core repulsion = 19778.695387 eV Total energy + Delta-G solvation = -3347.576614 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.21892 -38.62592 -36.67626 -35.64367 -33.94295 -33.30902 -30.09822 -29.63650 -27.65548 -27.05856 -25.58503 -25.23667 -22.90168 -21.73759 -20.74005 -19.71620 -19.15188 -17.57791 -16.70454 -16.23237 -15.58389 -15.32775 -15.18320 -14.79056 -14.38048 -14.28339 -14.04312 -13.75174 -13.39670 -13.00899 -12.66804 -12.62573 -12.32263 -12.08799 -11.75215 -11.50638 -11.47165 -11.12607 -11.09225 -10.94983 -10.92571 -10.67787 -10.49879 -10.20658 -10.05205 -9.66682 -9.46502 -9.21960 -8.39821 -8.29563 -7.55232 -7.30381 -6.75286 -4.34484 2.39792 2.85556 3.11380 3.17328 3.27460 3.48827 4.00857 4.01578 4.20447 4.47153 4.54551 4.67491 4.71307 4.73173 5.21225 5.29101 5.43374 5.56630 5.58594 5.62490 5.68760 5.71445 5.76083 5.88354 5.91548 6.04706 6.12077 6.13663 6.22515 6.33407 6.65306 6.98244 7.08080 7.15245 7.23396 7.30289 7.49321 7.65858 7.91485 8.01914 8.21027 8.45743 8.70099 8.85218 8.93651 9.45558 10.21193 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018199 B = 0.004666 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.136062 B = 5999.914147 C = 6953.517976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.359 6.359 3 C 0.078 3.922 4 C 0.114 3.886 5 N -0.741 5.741 6 C 0.563 3.437 7 O -0.540 6.540 8 C -0.258 4.258 9 C -0.057 4.057 10 C -0.244 4.244 11 C -0.095 4.095 12 C -0.148 4.148 13 C 0.148 3.852 14 C -0.418 4.418 15 H 0.102 0.898 16 C 0.070 3.930 17 N -0.796 5.796 18 Si 0.916 3.084 19 H -0.263 1.263 20 H -0.280 1.280 21 H -0.264 1.264 22 C -0.123 4.123 23 C -0.134 4.134 24 C -0.161 4.161 25 H 0.049 0.951 26 H 0.040 0.960 27 H 0.086 0.914 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.396 0.604 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.115 0.885 35 H 0.282 0.718 36 H 0.096 0.904 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.006 -1.780 -13.874 14.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.277 6.277 3 C 0.038 3.962 4 C -0.011 4.011 5 N -0.396 5.396 6 C 0.357 3.643 7 O -0.419 6.419 8 C -0.263 4.263 9 C -0.076 4.076 10 C -0.264 4.264 11 C -0.114 4.114 12 C -0.167 4.167 13 C 0.144 3.856 14 C -0.447 4.447 15 H 0.119 0.881 16 C -0.147 4.147 17 N -0.422 5.422 18 Si 0.740 3.260 19 H -0.187 1.187 20 H -0.205 1.205 21 H -0.188 1.188 22 C -0.160 4.160 23 C -0.171 4.171 24 C -0.199 4.199 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.104 0.896 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.231 0.769 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.133 0.867 35 H 0.092 0.908 36 H 0.114 0.886 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.570 -1.172 -13.573 13.864 hybrid contribution -0.469 0.344 0.170 0.606 sum 2.100 -0.828 -13.404 13.593 Atomic orbital electron populations 1.22755 0.80860 1.02772 1.00397 1.87875 1.19946 1.25191 1.94715 1.22852 0.95653 0.84397 0.93290 1.21541 1.01272 0.93866 0.84425 1.45858 1.67475 1.20963 1.05293 1.18446 0.77257 0.86303 0.82271 1.90681 1.44068 1.21533 1.85601 1.19493 1.19360 0.94667 0.92821 1.20682 0.96976 0.93411 0.96509 1.20290 1.14116 0.99076 0.92872 1.20800 0.99293 0.95747 0.95588 1.21316 1.02350 0.94009 0.99002 1.17467 0.86425 0.92693 0.89004 1.20030 1.21118 0.95194 1.08351 0.88067 1.26072 0.95038 0.99569 0.94060 1.69709 1.22621 1.34085 1.15786 0.86231 0.79044 0.82234 0.78447 1.18714 1.20506 1.18816 1.23012 0.93785 1.03374 0.95828 1.22757 0.96856 1.01132 0.96391 1.23479 0.99055 1.00564 0.96790 0.93213 0.94141 0.89568 0.91953 0.91388 0.76861 0.89126 0.89094 0.89094 0.86717 0.90756 0.88557 0.90321 0.89886 0.91275 0.90846 0.88965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.62 101.05 1.07 1.41 16 2 O -0.36 -4.75 10.03 -35.23 -0.35 -5.10 16 3 C 0.08 0.96 0.79 -89.81 -0.07 0.89 16 4 C 0.11 1.77 4.61 -4.04 -0.02 1.75 16 5 N -0.74 -13.61 5.35 -61.38 -0.33 -13.94 16 6 C 0.56 13.28 7.72 -12.52 -0.10 13.19 16 7 O -0.54 -14.42 13.63 5.26 0.07 -14.35 16 8 C -0.26 -6.43 5.92 -104.37 -0.62 -7.05 16 9 C -0.06 -1.24 9.52 -39.22 -0.37 -1.62 16 10 C -0.24 -5.28 10.03 -39.37 -0.39 -5.68 16 11 C -0.10 -2.18 10.01 -39.60 -0.40 -2.58 16 12 C -0.15 -3.79 8.62 -38.88 -0.34 -4.13 16 13 C 0.15 4.03 5.48 -106.55 -0.58 3.45 16 14 C -0.42 -11.65 7.59 -37.82 -0.29 -11.94 16 15 H 0.10 2.91 6.05 -52.49 -0.32 2.59 16 16 C 0.07 1.84 5.25 -17.30 -0.09 1.75 16 17 N -0.80 -21.00 11.27 55.56 0.63 -20.37 16 18 Si 0.92 19.94 29.57 -169.99 -5.03 14.91 16 19 H -0.26 -5.86 7.11 56.52 0.40 -5.46 16 20 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 21 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 22 C -0.12 -1.30 7.47 -25.92 -0.19 -1.50 16 23 C -0.13 -1.22 8.02 -25.92 -0.21 -1.43 16 24 C -0.16 -1.59 7.21 -25.92 -0.19 -1.78 16 25 H 0.05 0.67 7.02 -51.93 -0.36 0.31 16 26 H 0.04 0.40 6.80 -51.93 -0.35 0.05 16 27 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.06 1.03 7.47 -51.93 -0.39 0.65 16 29 H 0.07 1.05 7.94 -51.93 -0.41 0.64 16 30 H 0.40 6.72 6.24 -40.82 -0.25 6.47 16 31 H 0.09 1.69 6.44 -52.49 -0.34 1.35 16 32 H 0.09 1.71 8.06 -52.48 -0.42 1.29 16 33 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 34 H 0.11 3.00 6.74 -52.48 -0.35 2.65 16 35 H 0.28 6.78 8.29 -40.82 -0.34 6.44 16 36 H 0.10 0.97 7.96 -51.93 -0.41 0.56 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.69 6.81 -51.93 -0.35 0.34 16 41 H 0.09 0.85 8.10 -51.93 -0.42 0.43 16 LS Contribution 334.57 15.07 5.04 5.04 Total: -1.00 -30.26 334.57 -8.39 -38.65 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -5.64 Total: 10.42 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: -2.78 Total: -15.26 kcal Atomic # 7 Polarization: -34.61 SS G_CDS: 0.30 Total: -34.31 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.28 Total: -19.45 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.03 Total: 14.91 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.26 -8.39 -38.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601416530.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.298 kcal (2) G-P(sol) polarization free energy of solvation -30.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds