Wall clock time and date at job start Tue Mar 31 2020 06:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42907 * 114.00037 * 2 1 4 4 C 1.53005 * 112.84423 * 64.68174 * 3 2 1 5 5 N 1.46497 * 109.47216 * 48.65204 * 4 3 2 6 6 C 1.34779 * 119.99913 * 185.03544 * 5 4 3 7 7 O 1.21616 * 119.99981 * 0.02562 * 6 5 4 8 8 C 1.47432 * 120.00104 * 180.02562 * 6 5 4 9 9 C 1.39222 * 120.28014 * 354.05364 * 8 6 5 10 10 C 1.38219 * 120.08896 * 180.29936 * 9 8 6 11 11 C 1.38822 * 120.67667 * 359.43836 * 10 9 8 12 12 C 1.37599 * 120.56858 * 0.56361 * 11 10 9 13 13 C 1.40703 * 119.88368 * 359.72242 * 12 11 10 14 14 C 1.40884 * 120.32793 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99791 * 143.82414 * 14 13 12 16 16 C 1.40272 * 120.00066 * 323.82262 * 14 13 12 17 17 N 1.30628 * 119.99841 * 351.06996 * 16 14 13 18 18 Si 1.86798 * 119.99916 * 171.07278 * 16 14 13 19 19 H 1.48500 * 109.47254 * 59.99908 * 18 16 14 20 20 H 1.48506 * 109.47047 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47114 * 299.99592 * 18 16 14 22 22 C 1.53775 * 113.69220 * 195.94559 * 3 2 1 23 23 C 1.53785 * 87.07973 * 89.13032 * 22 3 2 24 24 C 1.53777 * 87.08049 * 25.43182 * 23 22 3 25 25 H 1.09004 * 109.46740 * 301.60072 * 1 2 3 26 26 H 1.09003 * 109.46902 * 61.59573 * 1 2 3 27 27 H 1.08997 * 109.47179 * 181.59480 * 1 2 3 28 28 H 1.09001 * 109.47277 * 288.65148 * 4 3 2 29 29 H 1.09003 * 109.46696 * 168.65611 * 4 3 2 30 30 H 0.96993 * 120.00010 * 5.04564 * 5 4 3 31 31 H 1.08000 * 119.95551 * 0.02562 * 9 8 6 32 32 H 1.08005 * 119.65996 * 179.70539 * 10 9 8 33 33 H 1.07999 * 119.71866 * 180.30630 * 11 10 9 34 34 H 1.08005 * 120.05826 * 179.74442 * 12 11 10 35 35 H 0.97008 * 119.99236 * 180.02562 * 17 16 14 36 36 H 1.08995 * 113.61892 * 203.67653 * 22 3 2 37 37 H 1.08999 * 113.61429 * 334.58534 * 22 3 2 38 38 H 1.09007 * 113.61342 * 270.88436 * 23 22 3 39 39 H 1.08992 * 113.69124 * 139.99210 * 23 22 3 40 40 H 1.09000 * 113.61734 * 220.01598 * 24 23 22 41 41 H 1.09003 * 113.61598 * 89.11149 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.7011 2.0934 1.2746 5 7 1.9782 1.2571 2.4450 6 6 1.6822 1.7075 3.6804 7 8 1.1847 2.8080 3.8234 8 6 1.9616 0.8661 4.8584 9 6 2.4151 -0.4402 4.6964 10 6 2.6699 -1.2275 5.8034 11 6 2.4896 -0.7266 7.0855 12 6 2.0425 0.5605 7.2774 13 6 1.7702 1.3809 6.1673 14 6 1.3125 2.7004 6.3530 15 1 1.6331 3.4827 5.6809 16 6 0.4405 2.9980 7.4106 17 7 -0.0849 2.0318 8.1154 18 14 0.0307 4.7759 7.8112 19 1 -0.6052 5.4152 6.6313 20 1 -0.9061 4.8206 8.9626 21 1 1.2770 5.5052 8.1578 22 6 3.4986 1.3193 -0.3869 23 6 3.0369 1.4670 -1.8463 24 6 1.7479 2.0967 -1.2923 25 1 -0.3633 0.5385 0.8753 26 1 -0.3633 0.4889 -0.9040 27 1 -0.3633 -1.0272 0.0286 28 1 0.6505 2.3841 1.2762 29 1 2.3251 2.9864 1.3100 30 1 2.3748 0.3793 2.3310 31 1 2.5637 -0.8403 3.7043 32 1 3.0169 -2.2415 5.6697 33 1 2.6981 -1.3538 7.9396 34 1 1.9012 0.9405 8.2785 35 1 -0.6883 2.2377 8.8466 36 1 4.0397 2.1872 -0.0102 37 1 4.0111 0.3789 -0.1842 38 1 2.8754 0.5148 -2.3517 39 1 3.6446 2.1583 -2.4300 40 1 0.8472 1.7840 -1.8205 41 1 1.8104 3.1772 -1.1629 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601416530.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:57 Heat of formation + Delta-G solvation = -58.650364 kcal Electronic energy + Delta-G solvation = -23127.083140 eV Core-core repulsion = 19778.695387 eV Total energy + Delta-G solvation = -3348.387753 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.31568 -40.31452 -38.50764 -36.55838 -35.76029 -35.04758 -31.92105 -31.48715 -28.98852 -28.02518 -27.18845 -26.36277 -24.29188 -23.24978 -22.52374 -21.17214 -20.36279 -19.42045 -18.27461 -17.35434 -17.13267 -16.82529 -16.41835 -16.15478 -15.95213 -15.71934 -15.35840 -15.07358 -15.00384 -14.52218 -14.48018 -13.94410 -13.83815 -13.41087 -13.22324 -12.86376 -12.85183 -12.66555 -12.51675 -12.38548 -12.28834 -11.98000 -11.91559 -11.69291 -11.48855 -11.13736 -11.10335 -10.55291 -10.22411 -9.95694 -9.39636 -9.21493 -8.66661 -6.35796 0.51603 1.01649 1.32712 1.44379 1.50321 2.21181 2.32430 2.35110 2.77361 2.80658 3.53315 3.63042 3.67504 3.72026 3.88542 4.30312 4.35064 4.37413 4.43086 4.48740 4.56165 4.57807 4.66919 4.78146 4.80352 4.87070 4.93187 5.06395 5.08075 5.09581 5.21433 5.24144 5.34099 5.38306 5.60715 5.64766 5.82231 6.04608 6.10030 6.20975 6.34084 6.63752 6.80640 6.91497 7.00979 7.65615 8.31856 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018199 B = 0.004666 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.136062 B = 5999.914147 C = 6953.517976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.368 6.368 3 C 0.074 3.926 4 C 0.112 3.888 5 N -0.720 5.720 6 C 0.558 3.442 7 O -0.581 6.581 8 C -0.278 4.278 9 C -0.055 4.055 10 C -0.234 4.234 11 C -0.091 4.091 12 C -0.175 4.175 13 C 0.117 3.883 14 C -0.459 4.459 15 H 0.078 0.922 16 C 0.032 3.968 17 N -0.826 5.826 18 Si 0.978 3.022 19 H -0.274 1.274 20 H -0.259 1.259 21 H -0.256 1.256 22 C -0.124 4.124 23 C -0.121 4.121 24 C -0.155 4.155 25 H 0.024 0.976 26 H 0.060 0.940 27 H 0.100 0.900 28 H 0.047 0.953 29 H 0.067 0.933 30 H 0.406 0.594 31 H 0.127 0.873 32 H 0.133 0.867 33 H 0.122 0.878 34 H 0.098 0.902 35 H 0.289 0.711 36 H 0.100 0.900 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.827 -3.198 -15.657 16.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.287 6.287 3 C 0.033 3.967 4 C -0.012 4.012 5 N -0.374 5.374 6 C 0.351 3.649 7 O -0.462 6.462 8 C -0.283 4.283 9 C -0.073 4.073 10 C -0.253 4.253 11 C -0.110 4.110 12 C -0.194 4.194 13 C 0.114 3.886 14 C -0.488 4.488 15 H 0.096 0.904 16 C -0.182 4.182 17 N -0.453 5.453 18 Si 0.800 3.200 19 H -0.200 1.200 20 H -0.183 1.183 21 H -0.181 1.181 22 C -0.161 4.161 23 C -0.159 4.159 24 C -0.193 4.193 25 H 0.043 0.957 26 H 0.078 0.922 27 H 0.119 0.881 28 H 0.065 0.935 29 H 0.086 0.914 30 H 0.242 0.758 31 H 0.145 0.855 32 H 0.151 0.849 33 H 0.139 0.861 34 H 0.117 0.883 35 H 0.099 0.901 36 H 0.118 0.882 37 H 0.096 0.904 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.099 0.901 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.414 -2.634 -15.386 15.979 hybrid contribution -0.657 0.606 0.606 1.080 sum 2.757 -2.028 -14.781 15.172 Atomic orbital electron populations 1.22839 0.80329 1.03606 1.00202 1.87863 1.20598 1.25569 1.94687 1.22976 0.97158 0.84251 0.92290 1.21756 1.00378 0.94234 0.84857 1.45622 1.65806 1.21354 1.04601 1.18473 0.77060 0.85719 0.83608 1.90656 1.46003 1.23160 1.86420 1.19874 1.19416 0.96312 0.92732 1.21046 0.95567 0.92058 0.98662 1.20802 1.11857 1.00671 0.91954 1.21183 0.97427 0.94780 0.97574 1.21270 1.04611 0.95566 0.97996 1.17845 0.87062 0.93154 0.90579 1.19996 1.23598 0.95472 1.09710 0.90391 1.26759 0.94402 1.03483 0.93577 1.69736 1.23419 1.35625 1.16501 0.85320 0.79235 0.77289 0.78193 1.19969 1.18307 1.18053 1.23080 0.92418 1.03565 0.97055 1.22705 0.96100 1.01604 0.95454 1.23498 1.00067 1.00754 0.95012 0.95697 0.92193 0.88142 0.93467 0.91439 0.75765 0.85524 0.84940 0.86050 0.88344 0.90072 0.88189 0.90384 0.89571 0.89412 0.90112 0.88280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.62 113.37 1.20 1.78 16 2 O -0.37 -9.01 10.03 -148.98 -1.49 -10.50 16 3 C 0.07 1.68 0.79 -10.27 -0.01 1.67 16 4 C 0.11 3.45 4.61 86.38 0.40 3.85 16 5 N -0.72 -26.28 5.35 -466.34 -2.50 -28.78 16 6 C 0.56 26.99 7.72 86.66 0.67 27.66 16 7 O -0.58 -32.55 13.63 -4.08 -0.06 -32.61 16 8 C -0.28 -14.03 5.92 -19.70 -0.12 -14.15 16 9 C -0.05 -2.28 9.52 22.50 0.21 -2.07 16 10 C -0.23 -9.37 10.03 22.41 0.22 -9.15 16 11 C -0.09 -4.01 10.01 22.26 0.22 -3.79 16 12 C -0.18 -9.19 8.62 22.72 0.20 -8.99 16 13 C 0.12 6.61 5.48 -21.11 -0.12 6.50 16 14 C -0.46 -26.99 7.59 23.41 0.18 -26.81 16 15 H 0.08 4.81 6.05 -2.91 -0.02 4.80 16 16 C 0.03 1.75 5.25 85.37 0.45 2.20 16 17 N -0.83 -45.15 11.27 21.88 0.25 -44.90 16 18 Si 0.98 42.48 29.57 68.60 2.03 44.51 16 19 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 20 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 21 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 22 C -0.12 -2.34 7.47 31.12 0.23 -2.11 16 23 C -0.12 -1.82 8.02 31.12 0.25 -1.57 16 24 C -0.16 -2.70 7.21 31.12 0.22 -2.47 16 25 H 0.02 0.66 7.02 -2.38 -0.02 0.64 16 26 H 0.06 1.07 6.80 -2.39 -0.02 1.05 16 27 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.05 1.60 7.47 -2.39 -0.02 1.59 16 29 H 0.07 2.09 7.94 -2.39 -0.02 2.08 16 30 H 0.41 13.14 6.24 -92.71 -0.58 12.56 16 31 H 0.13 4.29 6.44 -2.91 -0.02 4.27 16 32 H 0.13 4.26 8.06 -2.91 -0.02 4.23 16 33 H 0.12 4.54 8.06 -2.91 -0.02 4.51 16 34 H 0.10 5.37 6.74 -2.91 -0.02 5.35 16 35 H 0.29 14.27 8.29 -92.70 -0.77 13.50 16 36 H 0.10 1.81 7.96 -2.39 -0.02 1.80 16 37 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 39 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.08 1.30 6.81 -2.39 -0.02 1.28 16 41 H 0.10 1.60 8.10 -2.39 -0.02 1.58 16 Total: -1.00 -68.91 334.57 2.92 -66.00 By element: Atomic # 1 Polarization: 33.28 SS G_CDS: 0.47 Total: 33.75 kcal Atomic # 6 Polarization: -31.68 SS G_CDS: 4.22 Total: -27.46 kcal Atomic # 7 Polarization: -71.43 SS G_CDS: -2.25 Total: -73.68 kcal Atomic # 8 Polarization: -41.56 SS G_CDS: -1.55 Total: -43.11 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -68.91 2.92 -66.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601416530.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.346 kcal (2) G-P(sol) polarization free energy of solvation -68.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds