Wall clock time and date at job start Tue Mar 31 2020 07:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50695 * 119.99889 * 2 1 4 4 N 1.46505 * 109.46745 * 125.00244 * 3 2 1 5 5 C 1.46495 * 119.99799 * 270.18111 * 4 3 2 6 6 C 1.52998 * 109.47281 * 270.00386 * 5 4 3 7 7 O 1.42896 * 109.47090 * 65.00302 * 6 5 4 8 8 C 1.42907 * 113.99742 * 179.97438 * 7 6 5 9 9 C 1.34774 * 120.00125 * 90.18571 * 4 3 2 10 10 O 1.21611 * 120.00129 * 184.42583 * 9 4 3 11 11 C 1.47438 * 120.00054 * 4.42936 * 9 4 3 12 12 C 1.39230 * 120.28436 * 57.31716 * 11 9 4 13 13 C 1.38217 * 120.09310 * 180.27696 * 12 11 9 14 14 C 1.38827 * 120.67729 * 359.70444 * 13 12 11 15 15 C 1.37600 * 120.56498 * 359.97438 * 14 13 12 16 16 C 1.40705 * 119.88655 * 0.02562 * 15 14 13 17 17 C 1.40891 * 120.32790 * 179.97438 * 16 15 14 18 18 H 1.07993 * 119.99579 * 216.14773 * 17 16 15 19 19 C 1.40268 * 119.99923 * 36.14983 * 17 16 15 20 20 N 1.30634 * 120.00409 * 22.40844 * 19 17 16 21 21 Si 1.86808 * 119.99798 * 202.40945 * 19 17 16 22 22 H 1.48502 * 109.46706 * 180.02562 * 21 19 17 23 23 H 1.48495 * 109.46991 * 299.99719 * 21 19 17 24 24 H 1.48494 * 109.47165 * 60.00216 * 21 19 17 25 25 H 1.07995 * 120.00061 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.00150 * 179.97438 * 1 2 3 27 27 H 1.08004 * 119.99769 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.47279 * 4.99860 * 3 2 1 29 29 H 1.09006 * 109.46797 * 244.99565 * 3 2 1 30 30 H 1.09003 * 109.47059 * 30.00476 * 5 4 3 31 31 H 1.09001 * 109.46828 * 150.00168 * 5 4 3 32 32 H 1.09007 * 109.46759 * 185.00228 * 6 5 4 33 33 H 1.08998 * 109.47119 * 304.99448 * 6 5 4 34 34 H 1.09000 * 109.46988 * 179.97438 * 8 7 6 35 35 H 1.08994 * 109.46899 * 299.99595 * 8 7 6 36 36 H 1.08997 * 109.46854 * 59.99991 * 8 7 6 37 37 H 1.08002 * 119.95228 * 0.02562 * 12 11 9 38 38 H 1.08002 * 119.66163 * 179.71915 * 13 12 11 39 39 H 1.07998 * 119.71901 * 180.02562 * 14 13 12 40 40 H 1.08004 * 120.05602 * 180.02562 * 15 14 13 41 41 H 0.96996 * 119.99699 * 5.68497 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1315 5 6 2.5576 1.8611 2.4259 6 6 2.8436 3.3629 2.4854 7 8 2.0449 4.0388 1.5122 8 6 2.2364 5.4547 1.4850 9 6 4.2508 0.8695 0.9814 10 8 4.9978 0.8167 1.9396 11 6 4.7205 0.4278 -0.3446 12 6 4.6858 1.3010 -1.4285 13 6 5.1217 0.8810 -2.6710 14 6 5.6034 -0.4081 -2.8541 15 6 5.6561 -1.2916 -1.8006 16 6 5.2184 -0.8891 -0.5254 17 6 5.2677 -1.7863 0.5598 18 1 4.4892 -1.7718 1.3081 19 6 6.3279 -2.6983 0.6681 20 7 7.4607 -2.4580 0.0635 21 14 6.1201 -4.2566 1.6771 22 1 7.3771 -5.0460 1.6332 23 1 5.8105 -3.8975 3.0844 24 1 5.0077 -5.0648 1.1163 25 1 -0.5400 0.9353 0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9354 -0.0004 28 1 1.3586 2.1316 0.0895 29 1 2.6213 1.4025 -0.9314 30 1 1.4879 1.6898 2.5467 31 1 3.0990 1.3561 3.2259 32 1 2.6017 3.7397 3.4793 33 1 3.8986 3.5404 2.2765 34 1 1.5954 5.8934 0.7204 35 1 1.9815 5.8746 2.4580 36 1 3.2787 5.6759 1.2555 37 1 4.3139 2.3067 -1.2990 38 1 5.0874 1.5627 -3.5080 39 1 5.9405 -0.7199 -3.8317 40 1 6.0328 -2.2925 -1.9523 41 1 7.5977 -1.6123 -0.3915 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601533157.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:27 Heat of formation + Delta-G solvation = -44.020780 kcal Electronic energy + Delta-G solvation = -23593.709734 eV Core-core repulsion = 20245.956368 eV Total energy + Delta-G solvation = -3347.753366 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.53008 -37.85101 -36.98021 -35.53999 -33.86351 -32.87067 -30.72411 -29.56110 -29.03076 -26.47374 -25.54928 -25.08679 -23.32244 -21.52301 -20.98240 -19.86943 -18.64268 -17.68637 -16.70644 -16.40018 -15.89522 -15.60708 -15.01486 -14.83632 -14.47087 -14.45685 -14.06785 -13.55161 -13.34831 -12.87077 -12.47538 -12.47083 -12.29307 -12.05446 -11.93758 -11.81209 -11.51759 -11.22506 -11.06883 -10.94459 -10.89401 -10.76316 -10.38699 -10.11638 -9.69684 -9.54723 -9.15623 -9.01809 -8.77736 -8.14558 -7.69787 -7.62246 -7.18040 -4.48755 2.39365 2.48451 2.72390 3.18533 3.26956 3.37850 3.63405 3.80134 3.87566 4.04352 4.57049 5.11492 5.16831 5.27433 5.28715 5.34142 5.41892 5.44283 5.47493 5.56707 5.64904 5.79452 5.92714 5.98035 6.04896 6.11722 6.17522 6.28036 6.43127 6.75992 6.86681 6.92101 6.97633 7.13100 7.21425 7.28481 7.50461 7.62630 7.71707 7.81455 8.01255 8.16606 8.20798 8.65204 8.81410 9.13520 10.07454 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015333 B = 0.005702 C = 0.005274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.701057 B = 4909.269521 C = 5307.687340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.152 4.152 3 C 0.136 3.864 4 N -0.611 5.611 5 C 0.120 3.880 6 C 0.046 3.954 7 O -0.387 6.387 8 C 0.032 3.968 9 C 0.587 3.413 10 O -0.539 6.539 11 C -0.245 4.245 12 C -0.053 4.053 13 C -0.251 4.251 14 C -0.077 4.077 15 C -0.201 4.201 16 C 0.130 3.870 17 C -0.501 4.501 18 H 0.074 0.926 19 C 0.041 3.959 20 N -0.792 5.792 21 Si 1.065 2.935 22 H -0.273 1.273 23 H -0.275 1.275 24 H -0.275 1.275 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.112 0.888 28 H 0.081 0.919 29 H 0.098 0.902 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.082 0.918 35 H 0.037 0.963 36 H 0.039 0.961 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.105 0.895 41 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.479 7.988 1.148 13.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.171 4.171 3 C 0.013 3.987 4 N -0.345 5.345 5 C -0.003 4.003 6 C -0.032 4.032 7 O -0.306 6.306 8 C -0.064 4.064 9 C 0.379 3.621 10 O -0.416 6.416 11 C -0.249 4.249 12 C -0.071 4.071 13 C -0.270 4.270 14 C -0.096 4.096 15 C -0.220 4.220 16 C 0.126 3.874 17 C -0.528 4.528 18 H 0.092 0.908 19 C -0.181 4.181 20 N -0.414 5.414 21 Si 0.888 3.112 22 H -0.198 1.198 23 H -0.201 1.201 24 H -0.200 1.200 25 H 0.111 0.889 26 H 0.112 0.888 27 H 0.130 0.870 28 H 0.099 0.901 29 H 0.116 0.884 30 H 0.096 0.904 31 H 0.115 0.885 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.101 0.899 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.123 0.877 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.349 6.471 1.988 11.542 hybrid contribution -0.638 1.750 -0.404 1.906 sum -9.987 8.221 1.584 13.032 Atomic orbital electron populations 1.23721 0.95719 1.01297 1.03097 1.23563 0.96084 0.99973 0.97477 1.20794 0.92304 0.94595 0.90990 1.47897 1.12154 1.63692 1.10751 1.21347 1.00590 0.90698 0.87676 1.23082 0.95151 0.93783 0.91186 1.87878 1.65037 1.18828 1.58851 1.22694 1.00848 0.81937 1.00951 1.18528 0.80082 0.74259 0.89238 1.90676 1.54988 1.54248 1.41646 1.19453 1.17747 0.95892 0.91833 1.20598 0.97316 0.96805 0.92421 1.20248 1.13256 0.97164 0.96364 1.20732 0.97722 0.93885 0.97266 1.21160 1.09314 0.98997 0.92495 1.17389 0.88090 0.89335 0.92537 1.20444 1.09598 1.15003 1.07790 0.90754 1.27002 0.91735 1.02678 0.96658 1.70364 1.22992 1.26298 1.21787 0.83642 0.77137 0.74152 0.76234 1.19780 1.20066 1.20001 0.88892 0.88840 0.86981 0.90061 0.88392 0.90410 0.88547 0.92883 0.92833 0.89907 0.94448 0.94256 0.88780 0.88821 0.88884 0.87725 0.88897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.66 14.32 29.01 0.42 -2.25 16 2 C -0.15 -2.44 9.85 -36.03 -0.35 -2.80 16 3 C 0.14 2.24 5.49 -5.19 -0.03 2.22 16 4 N -0.61 -11.39 2.42 -176.33 -0.43 -11.82 16 5 C 0.12 1.89 5.85 -4.05 -0.02 1.87 16 6 C 0.05 0.64 6.28 37.16 0.23 0.87 16 7 O -0.39 -5.31 9.52 -35.23 -0.34 -5.65 16 8 C 0.03 0.34 11.01 101.05 1.11 1.45 16 9 C 0.59 13.65 6.29 -12.51 -0.08 13.57 16 10 O -0.54 -14.31 16.05 5.27 0.08 -14.23 16 11 C -0.24 -5.90 4.93 -104.36 -0.51 -6.41 16 12 C -0.05 -1.14 7.55 -39.22 -0.30 -1.43 16 13 C -0.25 -5.26 10.03 -39.37 -0.39 -5.66 16 14 C -0.08 -1.70 10.01 -39.60 -0.40 -2.09 16 15 C -0.20 -4.94 8.06 -38.88 -0.31 -5.25 16 16 C 0.13 3.40 5.08 -106.54 -0.54 2.86 16 17 C -0.50 -13.51 7.81 -37.82 -0.30 -13.81 16 18 H 0.07 2.05 7.59 -52.49 -0.40 1.65 16 19 C 0.04 1.08 4.96 -17.30 -0.09 0.99 16 20 N -0.79 -21.46 12.69 55.56 0.71 -20.75 16 21 Si 1.06 22.34 29.99 -169.99 -5.10 17.24 16 22 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 23 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 24 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 25 H 0.09 1.09 7.84 -52.49 -0.41 0.68 16 26 H 0.09 1.13 8.06 -52.49 -0.42 0.71 16 27 H 0.11 2.08 8.06 -52.48 -0.42 1.66 16 28 H 0.08 1.20 6.76 -51.93 -0.35 0.85 16 29 H 0.10 1.73 4.58 -51.93 -0.24 1.50 16 30 H 0.08 1.06 8.07 -51.93 -0.42 0.65 16 31 H 0.10 1.61 7.36 -51.93 -0.38 1.23 16 32 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.09 1.83 7.59 -52.49 -0.40 1.43 16 38 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 39 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 40 H 0.10 2.64 7.20 -52.48 -0.38 2.26 16 41 H 0.30 8.35 6.92 -40.82 -0.28 8.06 16 LS Contribution 346.37 15.07 5.22 5.22 Total: -1.00 -29.98 346.37 -7.27 -37.25 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -5.86 Total: 8.60 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -1.56 Total: -15.87 kcal Atomic # 7 Polarization: -32.85 SS G_CDS: 0.28 Total: -32.57 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -0.25 Total: -19.88 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.10 Total: 17.24 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.98 -7.27 -37.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601533157.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.768 kcal (2) G-P(sol) polarization free energy of solvation -29.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds