Wall clock time and date at job start Tue Mar 31 2020 07:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50695 * 119.99889 * 2 1 4 4 N 1.46505 * 109.46745 * 125.00244 * 3 2 1 5 5 C 1.46495 * 119.99799 * 270.18111 * 4 3 2 6 6 C 1.52998 * 109.47281 * 270.00386 * 5 4 3 7 7 O 1.42896 * 109.47090 * 65.00302 * 6 5 4 8 8 C 1.42907 * 113.99742 * 179.97438 * 7 6 5 9 9 C 1.34774 * 120.00125 * 90.18571 * 4 3 2 10 10 O 1.21611 * 120.00129 * 184.42583 * 9 4 3 11 11 C 1.47438 * 120.00054 * 4.42936 * 9 4 3 12 12 C 1.39230 * 120.28436 * 57.31716 * 11 9 4 13 13 C 1.38217 * 120.09310 * 180.27696 * 12 11 9 14 14 C 1.38827 * 120.67729 * 359.70444 * 13 12 11 15 15 C 1.37600 * 120.56498 * 359.97438 * 14 13 12 16 16 C 1.40705 * 119.88655 * 0.02562 * 15 14 13 17 17 C 1.40891 * 120.32790 * 179.97438 * 16 15 14 18 18 H 1.07993 * 119.99579 * 216.14773 * 17 16 15 19 19 C 1.40268 * 119.99923 * 36.14983 * 17 16 15 20 20 N 1.30634 * 120.00409 * 22.40844 * 19 17 16 21 21 Si 1.86808 * 119.99798 * 202.40945 * 19 17 16 22 22 H 1.48502 * 109.46706 * 180.02562 * 21 19 17 23 23 H 1.48495 * 109.46991 * 299.99719 * 21 19 17 24 24 H 1.48494 * 109.47165 * 60.00216 * 21 19 17 25 25 H 1.07995 * 120.00061 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.00150 * 179.97438 * 1 2 3 27 27 H 1.08004 * 119.99769 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.47279 * 4.99860 * 3 2 1 29 29 H 1.09006 * 109.46797 * 244.99565 * 3 2 1 30 30 H 1.09003 * 109.47059 * 30.00476 * 5 4 3 31 31 H 1.09001 * 109.46828 * 150.00168 * 5 4 3 32 32 H 1.09007 * 109.46759 * 185.00228 * 6 5 4 33 33 H 1.08998 * 109.47119 * 304.99448 * 6 5 4 34 34 H 1.09000 * 109.46988 * 179.97438 * 8 7 6 35 35 H 1.08994 * 109.46899 * 299.99595 * 8 7 6 36 36 H 1.08997 * 109.46854 * 59.99991 * 8 7 6 37 37 H 1.08002 * 119.95228 * 0.02562 * 12 11 9 38 38 H 1.08002 * 119.66163 * 179.71915 * 13 12 11 39 39 H 1.07998 * 119.71901 * 180.02562 * 14 13 12 40 40 H 1.08004 * 120.05602 * 180.02562 * 15 14 13 41 41 H 0.96996 * 119.99699 * 5.68497 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1315 5 6 2.5576 1.8611 2.4259 6 6 2.8436 3.3629 2.4854 7 8 2.0449 4.0388 1.5122 8 6 2.2364 5.4547 1.4850 9 6 4.2508 0.8695 0.9814 10 8 4.9978 0.8167 1.9396 11 6 4.7205 0.4278 -0.3446 12 6 4.6858 1.3010 -1.4285 13 6 5.1217 0.8810 -2.6710 14 6 5.6034 -0.4081 -2.8541 15 6 5.6561 -1.2916 -1.8006 16 6 5.2184 -0.8891 -0.5254 17 6 5.2677 -1.7863 0.5598 18 1 4.4892 -1.7718 1.3081 19 6 6.3279 -2.6983 0.6681 20 7 7.4607 -2.4580 0.0635 21 14 6.1201 -4.2566 1.6771 22 1 7.3771 -5.0460 1.6332 23 1 5.8105 -3.8975 3.0844 24 1 5.0077 -5.0648 1.1163 25 1 -0.5400 0.9353 0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9354 -0.0004 28 1 1.3586 2.1316 0.0895 29 1 2.6213 1.4025 -0.9314 30 1 1.4879 1.6898 2.5467 31 1 3.0990 1.3561 3.2259 32 1 2.6017 3.7397 3.4793 33 1 3.8986 3.5404 2.2765 34 1 1.5954 5.8934 0.7204 35 1 1.9815 5.8746 2.4580 36 1 3.2787 5.6759 1.2555 37 1 4.3139 2.3067 -1.2990 38 1 5.0874 1.5627 -3.5080 39 1 5.9405 -0.7199 -3.8317 40 1 6.0328 -2.2925 -1.9523 41 1 7.5977 -1.6123 -0.3915 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601533157.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:26 Heat of formation + Delta-G solvation = -61.232181 kcal Electronic energy + Delta-G solvation = -23594.456077 eV Core-core repulsion = 20245.956368 eV Total energy + Delta-G solvation = -3348.499709 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.19515 -39.22813 -38.51624 -37.07318 -35.75072 -34.16219 -32.35789 -31.40831 -30.47893 -27.44857 -27.23792 -26.61811 -24.79211 -23.17653 -22.74310 -21.19304 -20.30532 -19.47127 -18.16583 -17.75299 -17.14365 -16.94384 -16.62489 -16.27400 -16.07753 -15.80048 -15.66502 -15.10659 -14.85739 -14.37335 -14.23672 -14.11183 -13.95070 -13.42490 -13.28291 -13.01259 -12.89788 -12.83054 -12.64163 -12.52139 -12.16484 -12.08353 -12.01688 -11.93522 -11.41106 -10.92820 -10.75389 -10.53571 -10.37023 -9.72509 -9.51582 -9.47934 -9.14822 -6.49832 0.55601 0.87557 1.27902 1.44538 1.58231 1.73661 1.93549 2.29266 2.30723 2.68047 2.82761 3.44014 3.85132 3.99759 4.16226 4.17952 4.21792 4.24180 4.33111 4.41377 4.52757 4.53234 4.56848 4.62346 4.76492 4.79728 4.84326 4.86846 4.91363 5.07367 5.11030 5.36768 5.52548 5.63989 5.73009 5.73628 5.78531 5.90016 5.92586 6.13221 6.18225 6.30318 6.49688 6.73647 6.86604 7.38856 8.04609 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015333 B = 0.005702 C = 0.005274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.701057 B = 4909.269521 C = 5307.687340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.189 4.189 3 C 0.141 3.859 4 N -0.601 5.601 5 C 0.114 3.886 6 C 0.056 3.944 7 O -0.401 6.401 8 C 0.027 3.973 9 C 0.581 3.419 10 O -0.587 6.587 11 C -0.255 4.255 12 C -0.054 4.054 13 C -0.232 4.232 14 C -0.077 4.077 15 C -0.218 4.218 16 C 0.106 3.894 17 C -0.537 4.537 18 H 0.052 0.948 19 C 0.005 3.995 20 N -0.817 5.817 21 Si 1.111 2.889 22 H -0.265 1.265 23 H -0.272 1.272 24 H -0.256 1.256 25 H 0.121 0.879 26 H 0.107 0.893 27 H 0.075 0.925 28 H 0.108 0.892 29 H 0.085 0.915 30 H 0.105 0.895 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.027 0.973 34 H 0.102 0.898 35 H 0.055 0.945 36 H 0.034 0.966 37 H 0.121 0.879 38 H 0.135 0.865 39 H 0.126 0.874 40 H 0.088 0.912 41 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.073 9.810 0.171 16.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.208 4.208 3 C 0.020 3.980 4 N -0.333 5.333 5 C -0.008 4.008 6 C -0.022 4.022 7 O -0.320 6.320 8 C -0.069 4.069 9 C 0.373 3.627 10 O -0.468 6.468 11 C -0.259 4.259 12 C -0.073 4.073 13 C -0.251 4.251 14 C -0.095 4.095 15 C -0.238 4.238 16 C 0.102 3.898 17 C -0.566 4.566 18 H 0.070 0.930 19 C -0.210 4.210 20 N -0.440 5.440 21 Si 0.929 3.071 22 H -0.189 1.189 23 H -0.197 1.197 24 H -0.181 1.181 25 H 0.139 0.861 26 H 0.125 0.875 27 H 0.093 0.907 28 H 0.126 0.874 29 H 0.103 0.897 30 H 0.123 0.877 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.046 0.954 34 H 0.120 0.880 35 H 0.073 0.927 36 H 0.052 0.948 37 H 0.138 0.862 38 H 0.153 0.847 39 H 0.143 0.857 40 H 0.106 0.894 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.001 8.328 0.981 14.640 hybrid contribution -0.040 1.436 -0.242 1.457 sum -12.042 9.764 0.739 15.520 Atomic orbital electron populations 1.23993 0.94417 1.03221 0.98037 1.23269 0.97105 0.98254 1.02205 1.20876 0.91990 0.95736 0.89448 1.47878 1.10864 1.61971 1.12553 1.21560 1.01723 0.91892 0.85624 1.22873 0.93812 0.92561 0.92908 1.87824 1.64689 1.20661 1.58829 1.22902 1.01115 0.80187 1.02725 1.18536 0.81374 0.74357 0.88463 1.90636 1.56805 1.56621 1.42712 1.19774 1.17121 0.95731 0.93288 1.20911 0.96815 0.97509 0.92020 1.20766 1.10045 0.97071 0.97196 1.21110 0.96670 0.93892 0.97826 1.21143 1.10425 0.99157 0.93050 1.17701 0.88786 0.90289 0.92997 1.20405 1.10140 1.17557 1.08500 0.93005 1.28298 0.90856 1.05074 0.96791 1.70493 1.23643 1.25627 1.24283 0.83093 0.77886 0.71142 0.75007 1.18936 1.19677 1.18068 0.86106 0.87521 0.90710 0.87386 0.89730 0.87709 0.90313 0.89889 0.95420 0.87990 0.92675 0.94776 0.86164 0.84678 0.85658 0.89353 0.90941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.72 14.32 67.78 0.97 -2.75 16 2 C -0.19 -5.93 9.85 25.64 0.25 -5.68 16 3 C 0.14 4.46 5.49 85.63 0.47 4.93 16 4 N -0.60 -22.42 2.42 -830.02 -2.01 -24.43 16 5 C 0.11 3.51 5.85 86.38 0.51 4.02 16 6 C 0.06 1.49 6.28 71.98 0.45 1.94 16 7 O -0.40 -9.85 9.52 -148.98 -1.42 -11.27 16 8 C 0.03 0.47 11.01 113.37 1.25 1.72 16 9 C 0.58 28.03 6.29 86.67 0.54 28.57 16 10 O -0.59 -32.96 16.05 -4.07 -0.07 -33.03 16 11 C -0.25 -12.60 4.93 -19.70 -0.10 -12.70 16 12 C -0.05 -2.26 7.55 22.50 0.17 -2.09 16 13 C -0.23 -9.08 10.03 22.41 0.22 -8.86 16 14 C -0.08 -3.26 10.01 22.26 0.22 -3.04 16 15 C -0.22 -11.10 8.06 22.72 0.18 -10.91 16 16 C 0.11 5.78 5.08 -21.11 -0.11 5.67 16 17 C -0.54 -30.97 7.81 23.41 0.18 -30.79 16 18 H 0.05 3.10 7.59 -2.91 -0.02 3.08 16 19 C 0.01 0.29 4.96 85.36 0.42 0.71 16 20 N -0.82 -46.76 12.69 21.88 0.28 -46.48 16 21 Si 1.11 47.02 29.99 68.60 2.06 49.08 16 22 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 23 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 24 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 25 H 0.12 2.21 7.84 -2.91 -0.02 2.19 16 26 H 0.11 2.24 8.06 -2.91 -0.02 2.22 16 27 H 0.07 2.92 8.06 -2.91 -0.02 2.89 16 28 H 0.11 2.83 6.76 -2.39 -0.02 2.81 16 29 H 0.08 2.87 4.58 -2.38 -0.01 2.86 16 30 H 0.10 2.63 8.07 -2.39 -0.02 2.61 16 31 H 0.08 2.70 7.36 -2.39 -0.02 2.69 16 32 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 33 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.12 4.37 7.59 -2.91 -0.02 4.35 16 38 H 0.14 4.24 8.06 -2.91 -0.02 4.22 16 39 H 0.13 4.49 8.06 -2.91 -0.02 4.46 16 40 H 0.09 4.69 7.20 -2.91 -0.02 4.67 16 41 H 0.28 16.66 6.92 -92.71 -0.64 16.02 16 Total: -1.00 -70.36 346.37 5.63 -64.73 By element: Atomic # 1 Polarization: 29.51 SS G_CDS: 1.14 Total: 30.64 kcal Atomic # 6 Polarization: -34.90 SS G_CDS: 5.65 Total: -29.25 kcal Atomic # 7 Polarization: -69.18 SS G_CDS: -1.73 Total: -70.91 kcal Atomic # 8 Polarization: -42.81 SS G_CDS: -1.48 Total: -44.30 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.06 Total: 49.08 kcal Total: -70.36 5.63 -64.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601533157.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.501 kcal (2) G-P(sol) polarization free energy of solvation -70.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds