Wall clock time and date at job start Tue Mar 31 2020 06:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42890 * 109.47190 * 2 1 4 4 C 1.42904 * 114.00101 * 180.02562 * 3 2 1 5 5 H 1.08996 * 112.84838 * 18.80077 * 4 3 2 6 6 C 1.53785 * 113.61484 * 150.00070 * 4 3 2 7 7 C 1.53784 * 87.07921 * 140.06606 * 6 4 3 8 8 H 1.09000 * 113.61574 * 89.11417 * 7 6 4 9 9 N 1.46504 * 113.60912 * 219.93305 * 7 6 4 10 10 C 1.34777 * 119.99842 * 203.47294 * 9 7 6 11 11 O 1.21611 * 119.99827 * 359.97438 * 10 9 7 12 12 C 1.47428 * 120.00139 * 180.02562 * 10 9 7 13 13 C 1.39226 * 120.27909 * 356.34832 * 12 10 9 14 14 C 1.38229 * 120.08902 * 179.74746 * 13 12 10 15 15 C 1.38826 * 120.67578 * 0.55832 * 14 13 12 16 16 C 1.37600 * 120.57152 * 359.69815 * 15 14 13 17 17 C 1.40709 * 119.88128 * 0.02562 * 16 15 14 18 18 C 1.40882 * 120.33019 * 180.02562 * 17 16 15 19 19 H 1.07994 * 120.00261 * 215.15660 * 18 17 16 20 20 C 1.40278 * 119.99957 * 35.15835 * 18 17 16 21 21 N 1.30628 * 119.99886 * 9.43538 * 20 18 17 22 22 Si 1.86803 * 120.00000 * 189.44644 * 20 18 17 23 23 H 1.48494 * 109.47536 * 59.99538 * 22 20 18 24 24 H 1.48502 * 109.46791 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.46737 * 299.99405 * 22 20 18 26 26 C 1.53782 * 87.17430 * 334.52196 * 7 6 4 27 27 H 1.08998 * 109.47498 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47370 * 300.00093 * 1 2 3 29 29 H 1.09000 * 109.47256 * 60.00466 * 1 2 3 30 30 H 1.08998 * 109.47013 * 239.99589 * 2 1 3 31 31 H 1.09000 * 109.46986 * 120.00012 * 2 1 3 32 32 H 1.08992 * 113.61593 * 25.51019 * 6 4 3 33 33 H 1.08998 * 113.68810 * 254.62185 * 6 4 3 34 34 H 0.96998 * 119.99964 * 23.47397 * 9 7 6 35 35 H 1.08000 * 119.95854 * 0.02825 * 13 12 10 36 36 H 1.07999 * 119.66041 * 180.28601 * 14 13 12 37 37 H 1.08002 * 119.71653 * 179.71861 * 15 14 13 38 38 H 1.07993 * 120.06241 * 180.02562 * 16 15 14 39 39 H 0.97003 * 119.99968 * 179.97438 * 21 20 18 40 40 H 1.08994 * 113.60950 * 140.02437 * 26 7 6 41 41 H 1.08997 * 113.61687 * 270.93205 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.9277 0.5456 -0.3246 6 6 3.9483 2.7253 -0.7051 7 6 4.9914 2.8299 0.4200 8 1 5.9149 2.2900 0.2109 9 7 5.2256 4.2020 0.8772 10 6 6.3879 4.5224 1.4796 11 8 7.2421 3.6725 1.6439 12 6 6.6234 5.9029 1.9402 13 6 5.6817 6.8971 1.6888 14 6 5.9041 8.1891 2.1270 15 6 7.0680 8.5148 2.8101 16 6 8.0194 7.5551 3.0689 17 6 7.8148 6.2311 2.6386 18 6 8.7825 5.2409 2.8990 19 1 8.9599 4.4565 2.1782 20 6 9.5156 5.2737 4.0945 21 7 9.1793 6.1052 5.0442 22 14 10.9729 4.1286 4.3283 23 1 11.9874 4.3977 3.2779 24 1 11.5736 4.3590 5.6667 25 1 10.5162 2.7193 4.2261 26 6 4.0060 2.0461 1.3029 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.2304 3.5453 -0.7128 33 1 4.3824 2.5336 -1.6864 34 1 4.5441 4.8797 0.7465 35 1 4.7741 6.6576 1.1545 36 1 5.1668 8.9539 1.9322 37 1 7.2279 9.5302 3.1415 38 1 8.9216 7.8175 3.6013 39 1 9.6860 6.1276 5.8711 40 1 4.4865 1.3052 1.9417 41 1 3.3038 2.6809 1.8432 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601624682.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:29 Heat of formation + Delta-G solvation = -65.154123 kcal Electronic energy + Delta-G solvation = -22378.843678 eV Core-core repulsion = 19030.173901 eV Total energy + Delta-G solvation = -3348.669777 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.12436 -39.97009 -38.51265 -37.31280 -35.62769 -34.07392 -31.90153 -31.67426 -31.04909 -27.39422 -26.72466 -25.46785 -23.79670 -23.47163 -22.64272 -21.26298 -20.76365 -19.32872 -18.17423 -17.95146 -17.09779 -16.67585 -16.47228 -16.34352 -15.92104 -15.52972 -15.33785 -15.03445 -14.57915 -14.46210 -14.05492 -13.79092 -13.51011 -13.42746 -13.35131 -12.91591 -12.85149 -12.62169 -12.48839 -12.41977 -12.29494 -12.02855 -11.95036 -11.82768 -11.70315 -11.46218 -11.12821 -10.39375 -10.19989 -9.86519 -9.38366 -9.20894 -8.67221 -6.36291 0.52439 1.02611 1.33293 1.45012 1.51134 2.21165 2.34326 2.38654 2.80116 2.93765 3.51478 3.59045 3.72978 3.89495 3.92495 4.21827 4.26129 4.34960 4.39171 4.46953 4.52734 4.60126 4.73806 4.76642 4.85438 4.90025 4.98041 5.04720 5.07040 5.09118 5.18636 5.26509 5.31568 5.34862 5.62807 5.74791 5.83415 6.06987 6.12147 6.33903 6.35879 6.66562 6.81674 6.93632 7.02946 7.69063 8.30757 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018258 B = 0.003816 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.236083 B = 7335.679344 C = 8444.452666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.046 3.954 3 O -0.390 6.390 4 C 0.077 3.923 5 H 0.107 0.893 6 C -0.127 4.127 7 C 0.118 3.882 8 H 0.096 0.904 9 N -0.716 5.716 10 C 0.560 3.440 11 O -0.579 6.579 12 C -0.280 4.280 13 C -0.054 4.054 14 C -0.236 4.236 15 C -0.093 4.093 16 C -0.177 4.177 17 C 0.114 3.886 18 C -0.463 4.463 19 H 0.087 0.913 20 C 0.031 3.969 21 N -0.824 5.824 22 Si 0.979 3.021 23 H -0.257 1.257 24 H -0.260 1.260 25 H -0.273 1.273 26 C -0.171 4.171 27 H 0.089 0.911 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.406 0.594 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.120 0.880 38 H 0.098 0.902 39 H 0.289 0.711 40 H 0.063 0.937 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.782 -7.600 -8.846 17.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.030 4.030 3 O -0.310 6.310 4 C 0.018 3.982 5 H 0.125 0.875 6 C -0.165 4.165 7 C 0.013 3.987 8 H 0.114 0.886 9 N -0.369 5.369 10 C 0.354 3.646 11 O -0.461 6.461 12 C -0.285 4.285 13 C -0.073 4.073 14 C -0.255 4.255 15 C -0.111 4.111 16 C -0.196 4.196 17 C 0.111 3.889 18 C -0.492 4.492 19 H 0.105 0.895 20 C -0.184 4.184 21 N -0.451 5.451 22 Si 0.800 3.200 23 H -0.181 1.181 24 H -0.184 1.184 25 H -0.198 1.198 26 C -0.210 4.210 27 H 0.108 0.892 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.118 0.882 33 H 0.113 0.887 34 H 0.243 0.757 35 H 0.150 0.850 36 H 0.151 0.849 37 H 0.138 0.862 38 H 0.116 0.884 39 H 0.099 0.901 40 H 0.081 0.919 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -12.253 -7.975 -8.496 16.910 hybrid contribution 0.702 -0.256 0.615 0.968 sum -11.552 -8.232 -7.881 16.227 Atomic orbital electron populations 1.21764 0.92943 1.03322 1.02654 1.22733 0.96374 0.83110 1.00816 1.87922 1.20582 1.27884 1.94579 1.23428 0.81096 0.98366 0.95275 0.87489 1.23511 0.96541 0.98322 0.98104 1.22124 0.97430 0.83172 0.95975 0.88631 1.45699 1.18123 1.11515 1.61530 1.18466 0.81330 0.88289 0.76548 1.90619 1.45739 1.52039 1.57710 1.19870 0.98660 0.93095 1.16879 1.21081 0.96700 0.92769 0.96737 1.20811 0.99839 0.96820 1.08039 1.21185 0.94286 0.98433 0.97237 1.21282 1.00303 0.92840 1.05183 1.17878 0.90212 0.92791 0.88041 1.20225 1.15583 1.09983 1.03365 0.89497 1.26832 0.99634 0.97038 0.94892 1.69743 1.37049 1.33050 1.05247 0.85306 0.77549 0.78450 0.78675 1.18144 1.18407 1.19756 1.24056 0.98545 1.00121 0.98298 0.89240 0.92673 0.91976 0.91971 0.93199 0.88187 0.88654 0.75696 0.85000 0.84938 0.86217 0.88399 0.90057 0.91869 0.89754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 10.28 71.98 0.74 -1.26 16 2 C 0.05 0.74 6.50 71.98 0.47 1.21 16 3 O -0.39 -8.56 10.36 -148.98 -1.54 -10.10 16 4 C 0.08 1.62 4.31 31.22 0.13 1.76 16 5 H 0.11 1.86 7.87 -2.39 -0.02 1.84 16 6 C -0.13 -2.69 7.66 31.12 0.24 -2.46 16 7 C 0.12 3.49 4.21 45.52 0.19 3.69 16 8 H 0.10 3.17 7.50 -2.39 -0.02 3.15 16 9 N -0.72 -24.95 5.31 -443.28 -2.35 -27.31 16 10 C 0.56 26.43 7.73 86.66 0.67 27.10 16 11 O -0.58 -31.74 13.14 -4.07 -0.05 -31.79 16 12 C -0.28 -13.86 5.92 -19.70 -0.12 -13.98 16 13 C -0.05 -2.20 9.52 22.51 0.21 -1.98 16 14 C -0.24 -9.32 10.03 22.41 0.22 -9.09 16 15 C -0.09 -4.08 10.01 22.26 0.22 -3.86 16 16 C -0.18 -9.25 8.62 22.72 0.20 -9.06 16 17 C 0.11 6.41 5.49 -21.11 -0.12 6.30 16 18 C -0.46 -27.04 7.77 23.41 0.18 -26.86 16 19 H 0.09 5.33 5.74 -2.91 -0.02 5.31 16 20 C 0.03 1.66 5.25 85.37 0.45 2.11 16 21 N -0.82 -44.82 11.23 21.88 0.25 -44.57 16 22 Si 0.98 42.20 29.57 68.60 2.03 44.23 16 23 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 24 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 25 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 26 C -0.17 -4.62 7.73 31.22 0.24 -4.37 16 27 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.10 2.03 8.11 -2.39 -0.02 2.01 16 33 H 0.09 1.71 8.14 -2.39 -0.02 1.70 16 34 H 0.41 11.80 6.76 -92.71 -0.63 11.18 16 35 H 0.13 4.12 6.41 -2.91 -0.02 4.11 16 36 H 0.13 4.17 8.06 -2.91 -0.02 4.15 16 37 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16 38 H 0.10 5.35 6.68 -2.91 -0.02 5.33 16 39 H 0.29 14.20 8.29 -92.71 -0.77 13.43 16 40 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -69.05 340.58 2.67 -66.38 By element: Atomic # 1 Polarization: 33.52 SS G_CDS: 0.41 Total: 33.93 kcal Atomic # 6 Polarization: -34.70 SS G_CDS: 3.94 Total: -30.76 kcal Atomic # 7 Polarization: -69.77 SS G_CDS: -2.11 Total: -71.88 kcal Atomic # 8 Polarization: -40.30 SS G_CDS: -1.60 Total: -41.90 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Total: -69.05 2.67 -66.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601624682.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.223 kcal (2) G-P(sol) polarization free energy of solvation -69.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds