Wall clock time and date at job start Tue Mar 31 2020 06:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42902 * 109.47137 * 2 1 4 4 C 1.42896 * 114.00340 * 184.47505 * 3 2 1 5 5 H 1.09007 * 109.46722 * 339.37716 * 4 3 2 6 6 C 1.50692 * 109.47283 * 219.37628 * 4 3 2 7 7 O 1.21286 * 119.99915 * 313.53001 * 6 4 3 8 8 N 1.34779 * 120.00259 * 133.81184 * 6 4 3 9 9 C 1.37136 * 119.99987 * 213.44618 * 8 6 4 10 10 H 1.08006 * 120.00116 * 230.39866 * 9 8 6 11 11 C 1.38889 * 120.00135 * 50.40302 * 9 8 6 12 12 N 1.31427 * 119.99823 * 36.62792 * 11 9 8 13 13 Si 1.86794 * 119.99951 * 216.63108 * 11 9 8 14 14 H 1.48500 * 109.47334 * 359.97438 * 13 11 9 15 15 H 1.48505 * 109.47249 * 119.99812 * 13 11 9 16 16 H 1.48502 * 109.47355 * 239.99486 * 13 11 9 17 17 C 1.39794 * 119.99786 * 33.44692 * 8 6 4 18 18 C 1.38959 * 120.07709 * 354.75341 * 17 8 6 19 19 C 1.38079 * 119.92123 * 179.79618 * 18 17 8 20 20 C 1.38312 * 120.07668 * 0.45859 * 19 18 17 21 21 C 1.38311 * 120.15510 * 359.78968 * 20 19 18 22 22 C 1.38077 * 120.07850 * 359.97438 * 21 20 19 23 23 C 1.52995 * 109.47074 * 99.37171 * 4 3 2 24 24 C 1.53002 * 117.50203 * 1.20443 * 23 4 3 25 25 C 1.53003 * 117.50010 * 292.54762 * 23 4 3 26 26 H 1.08992 * 109.47453 * 300.00360 * 1 2 3 27 27 H 1.09007 * 109.46713 * 60.00680 * 1 2 3 28 28 H 1.08998 * 109.47188 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47453 * 239.99640 * 2 1 3 30 30 H 1.09007 * 109.46713 * 119.99320 * 2 1 3 31 31 H 0.97001 * 119.99738 * 184.98523 * 12 11 9 32 32 H 1.07999 * 120.04094 * 0.02562 * 18 17 8 33 33 H 1.08002 * 119.96463 * 180.22942 * 19 18 17 34 34 H 1.07997 * 119.92051 * 179.77553 * 20 19 18 35 35 H 1.07997 * 119.95655 * 179.97438 * 21 20 19 36 36 H 1.07998 * 120.04140 * 179.97438 * 22 21 20 37 37 H 1.09004 * 115.55361 * 146.87394 * 23 4 3 38 38 H 1.09004 * 117.49547 * 0.02562 * 24 23 4 39 39 H 1.09001 * 117.49953 * 145.01985 * 24 23 4 40 40 H 1.09004 * 117.49958 * 214.98033 * 25 23 4 41 41 H 1.09001 * 117.49793 * 359.97166 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4271 1.4615 -0.1019 5 1 3.8898 0.5227 0.2026 6 6 3.9074 2.5726 0.7958 7 8 3.3384 3.6437 0.7925 8 7 4.9727 2.3780 1.5981 9 6 5.0304 2.9928 2.8225 10 1 5.9122 3.5476 3.1072 11 6 3.9549 2.9018 3.6966 12 7 3.2604 1.7885 3.7703 13 14 3.4955 4.3619 4.7673 14 1 4.4272 5.4863 4.4974 15 1 2.1059 4.7848 4.4580 16 1 3.5883 3.9753 6.1981 17 6 6.0190 1.5494 1.1820 18 6 5.9143 0.8401 -0.0084 19 6 6.9514 0.0259 -0.4184 20 6 8.0894 -0.0916 0.3589 21 6 8.1948 0.6090 1.5468 22 6 7.1637 1.4288 1.9605 23 6 3.8112 1.7734 -1.5496 24 6 2.6763 1.9280 -2.5640 25 6 3.5672 0.6837 -2.5956 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 2.4665 1.7481 4.3262 32 1 5.0245 0.9284 -0.6140 33 1 6.8723 -0.5229 -1.3453 34 1 8.8975 -0.7319 0.0375 35 1 9.0847 0.5146 2.1514 36 1 7.2464 1.9752 2.8884 37 1 4.6898 2.4058 -1.6772 38 1 1.6559 1.8080 -2.1998 39 1 2.8084 2.6619 -3.3591 40 1 4.2851 0.5995 -3.4115 41 1 3.1335 -0.2555 -2.2523 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602250769.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:27 Heat of formation + Delta-G solvation = 17.991078 kcal Electronic energy + Delta-G solvation = -24285.215412 eV Core-core repulsion = 20940.151082 eV Total energy + Delta-G solvation = -3345.064330 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.41768 -38.26492 -37.32762 -35.72338 -34.59411 -32.38775 -31.23718 -30.43443 -28.64272 -27.76964 -24.97745 -22.98218 -22.02958 -21.92984 -21.46870 -20.88792 -19.37672 -17.48755 -17.08831 -16.47976 -16.22678 -15.23661 -15.01152 -14.67128 -14.40026 -14.15283 -13.96748 -13.42088 -13.33122 -12.83773 -12.73291 -12.46326 -12.22735 -12.02235 -11.87109 -11.80750 -11.42437 -11.23539 -11.09833 -10.91535 -10.88256 -10.55025 -10.34722 -10.24509 -10.02083 -9.73939 -9.46119 -9.37004 -8.67942 -8.42928 -8.19394 -7.00432 -6.44739 -4.22581 2.10695 2.16800 3.09899 3.31452 3.35862 3.41874 3.75105 4.07946 4.25003 4.58330 4.62597 4.88797 4.99543 5.07671 5.15692 5.26704 5.36819 5.46421 5.54814 5.57008 5.62544 5.73093 5.78437 5.85612 5.90364 5.94356 6.08400 6.17108 6.17186 6.28929 6.32175 6.37006 6.46074 6.60709 6.75443 7.15328 7.24946 7.27397 7.37370 7.52038 7.70726 8.03009 8.63298 8.74377 9.15135 9.64550 10.44538 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.010910 B = 0.009162 C = 0.005858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.895722 B = 3055.222343 C = 4778.331267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.051 3.949 3 O -0.356 6.356 4 C 0.094 3.906 5 H 0.098 0.902 6 C 0.522 3.478 7 O -0.504 6.504 8 N -0.403 5.403 9 C -0.363 4.363 10 H 0.089 0.911 11 C 0.079 3.921 12 N -0.820 5.820 13 Si 0.902 3.098 14 H -0.263 1.263 15 H -0.275 1.275 16 H -0.282 1.282 17 C 0.188 3.812 18 C -0.252 4.252 19 C -0.085 4.085 20 C -0.192 4.192 21 C -0.090 4.090 22 C -0.156 4.156 23 C -0.173 4.173 24 C -0.156 4.156 25 C -0.181 4.181 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.045 0.955 30 H 0.053 0.947 31 H 0.272 0.728 32 H 0.158 0.842 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.111 0.889 36 H 0.129 0.871 37 H 0.115 0.885 38 H 0.105 0.895 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.943 -6.472 -8.787 10.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.025 4.025 3 O -0.274 6.274 4 C 0.033 3.967 5 H 0.115 0.885 6 C 0.311 3.689 7 O -0.378 6.378 8 N -0.111 5.111 9 C -0.488 4.488 10 H 0.107 0.893 11 C -0.134 4.134 12 N -0.450 5.450 13 Si 0.726 3.274 14 H -0.187 1.187 15 H -0.200 1.200 16 H -0.208 1.208 17 C 0.088 3.912 18 C -0.273 4.273 19 C -0.103 4.103 20 C -0.212 4.212 21 C -0.109 4.109 22 C -0.177 4.177 23 C -0.192 4.192 24 C -0.193 4.193 25 C -0.218 4.218 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.175 0.825 33 H 0.127 0.873 34 H 0.124 0.876 35 H 0.129 0.871 36 H 0.147 0.853 37 H 0.133 0.867 38 H 0.124 0.876 39 H 0.110 0.890 40 H 0.115 0.885 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.228 -5.758 -8.588 10.342 hybrid contribution -0.075 0.251 0.670 0.720 sum 0.153 -5.507 -7.917 9.645 Atomic orbital electron populations 1.21703 0.93962 1.01718 1.03047 1.22629 0.95461 0.84437 1.00012 1.87989 1.19636 1.25648 1.94141 1.22315 0.82627 0.99655 0.92149 0.88465 1.20154 0.81847 0.87621 0.79267 1.90521 1.56618 1.26084 1.64601 1.41192 1.15463 1.39118 1.15370 1.18863 1.06155 1.33107 0.90662 0.89312 1.25364 0.96800 0.95422 0.95838 1.70211 1.15853 1.23066 1.35878 0.86343 0.79533 0.83098 0.78389 1.18656 1.20042 1.20850 1.18752 0.90664 0.88861 0.92967 1.22356 1.02717 1.02707 0.99483 1.20713 0.93269 0.97885 0.98461 1.20754 0.98914 1.04324 0.97230 1.20848 0.97744 0.96266 0.96023 1.20807 0.93174 1.02592 1.01146 1.22612 1.01770 1.04002 0.90814 1.22921 0.96957 0.99163 1.00253 1.23123 1.03798 0.93695 1.01188 0.91707 0.92178 0.91431 0.93680 0.92916 0.91807 0.82512 0.87254 0.87603 0.87103 0.85313 0.86715 0.87628 0.88983 0.88518 0.88807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 10.28 37.16 0.38 -1.62 16 2 C 0.05 0.83 6.33 37.16 0.24 1.07 16 3 O -0.36 -7.36 8.25 -48.81 -0.40 -7.76 16 4 C 0.09 1.95 1.94 -27.89 -0.05 1.90 16 5 H 0.10 2.01 5.19 -51.93 -0.27 1.74 16 6 C 0.52 13.42 5.47 -10.99 -0.06 13.36 16 7 O -0.50 -14.59 17.09 -8.02 -0.14 -14.72 16 8 N -0.40 -10.42 2.71 -58.98 -0.16 -10.58 16 9 C -0.36 -9.94 7.53 -14.94 -0.11 -10.05 16 10 H 0.09 2.36 7.42 -52.48 -0.39 1.97 16 11 C 0.08 2.15 4.74 -17.48 -0.08 2.07 16 12 N -0.82 -22.87 13.68 55.49 0.76 -22.11 16 13 Si 0.90 21.47 29.68 -169.99 -5.04 16.43 16 14 H -0.26 -6.18 7.11 56.52 0.40 -5.78 16 15 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 C 0.19 4.28 6.37 -83.69 -0.53 3.74 16 18 C -0.25 -4.91 7.53 -39.37 -0.30 -5.20 16 19 C -0.08 -1.41 10.04 -39.61 -0.40 -1.81 16 20 C -0.19 -3.13 10.04 -39.53 -0.40 -3.53 16 21 C -0.09 -1.58 10.04 -39.61 -0.40 -1.97 16 22 C -0.16 -3.28 9.30 -39.37 -0.37 -3.64 16 23 C -0.17 -2.97 3.59 -90.62 -0.33 -3.29 16 24 C -0.16 -2.30 9.87 -26.70 -0.26 -2.56 16 25 C -0.18 -2.37 9.88 -26.69 -0.26 -2.63 16 26 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 27 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.05 0.62 6.01 -51.93 -0.31 0.31 16 30 H 0.05 0.91 8.14 -51.92 -0.42 0.49 16 31 H 0.27 7.14 8.32 -40.82 -0.34 6.80 16 32 H 0.16 2.88 1.33 -66.29 -0.09 2.79 16 33 H 0.11 1.49 8.06 -52.49 -0.42 1.06 16 34 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 35 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 36 H 0.13 2.77 6.66 -52.49 -0.35 2.42 16 37 H 0.11 2.03 7.59 -51.93 -0.39 1.64 16 38 H 0.11 1.64 6.99 -51.93 -0.36 1.27 16 39 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.09 1.15 6.21 -51.93 -0.32 0.83 16 LS Contribution 334.40 15.07 5.04 5.04 Total: -1.00 -31.54 334.40 -8.31 -39.84 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -5.43 Total: 8.04 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: -2.93 Total: -14.17 kcal Atomic # 7 Polarization: -33.29 SS G_CDS: 0.60 Total: -32.69 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -0.54 Total: -22.49 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.04 Total: 16.43 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.54 -8.31 -39.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602250769.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.833 kcal (2) G-P(sol) polarization free energy of solvation -31.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds