Wall clock time and date at job start Tue Mar 31 2020 06:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42902 * 109.47137 * 2 1 4 4 C 1.42896 * 114.00340 * 184.47505 * 3 2 1 5 5 H 1.09007 * 109.46722 * 339.37716 * 4 3 2 6 6 C 1.50692 * 109.47283 * 219.37628 * 4 3 2 7 7 O 1.21286 * 119.99915 * 313.53001 * 6 4 3 8 8 N 1.34779 * 120.00259 * 133.81184 * 6 4 3 9 9 C 1.37136 * 119.99987 * 213.44618 * 8 6 4 10 10 H 1.08006 * 120.00116 * 230.39866 * 9 8 6 11 11 C 1.38889 * 120.00135 * 50.40302 * 9 8 6 12 12 N 1.31427 * 119.99823 * 36.62792 * 11 9 8 13 13 Si 1.86794 * 119.99951 * 216.63108 * 11 9 8 14 14 H 1.48500 * 109.47334 * 359.97438 * 13 11 9 15 15 H 1.48505 * 109.47249 * 119.99812 * 13 11 9 16 16 H 1.48502 * 109.47355 * 239.99486 * 13 11 9 17 17 C 1.39794 * 119.99786 * 33.44692 * 8 6 4 18 18 C 1.38959 * 120.07709 * 354.75341 * 17 8 6 19 19 C 1.38079 * 119.92123 * 179.79618 * 18 17 8 20 20 C 1.38312 * 120.07668 * 0.45859 * 19 18 17 21 21 C 1.38311 * 120.15510 * 359.78968 * 20 19 18 22 22 C 1.38077 * 120.07850 * 359.97438 * 21 20 19 23 23 C 1.52995 * 109.47074 * 99.37171 * 4 3 2 24 24 C 1.53002 * 117.50203 * 1.20443 * 23 4 3 25 25 C 1.53003 * 117.50010 * 292.54762 * 23 4 3 26 26 H 1.08992 * 109.47453 * 300.00360 * 1 2 3 27 27 H 1.09007 * 109.46713 * 60.00680 * 1 2 3 28 28 H 1.08998 * 109.47188 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47453 * 239.99640 * 2 1 3 30 30 H 1.09007 * 109.46713 * 119.99320 * 2 1 3 31 31 H 0.97001 * 119.99738 * 184.98523 * 12 11 9 32 32 H 1.07999 * 120.04094 * 0.02562 * 18 17 8 33 33 H 1.08002 * 119.96463 * 180.22942 * 19 18 17 34 34 H 1.07997 * 119.92051 * 179.77553 * 20 19 18 35 35 H 1.07997 * 119.95655 * 179.97438 * 21 20 19 36 36 H 1.07998 * 120.04140 * 179.97438 * 22 21 20 37 37 H 1.09004 * 115.55361 * 146.87394 * 23 4 3 38 38 H 1.09004 * 117.49547 * 0.02562 * 24 23 4 39 39 H 1.09001 * 117.49953 * 145.01985 * 24 23 4 40 40 H 1.09004 * 117.49958 * 214.98033 * 25 23 4 41 41 H 1.09001 * 117.49793 * 359.97166 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4271 1.4615 -0.1019 5 1 3.8898 0.5227 0.2026 6 6 3.9074 2.5726 0.7958 7 8 3.3384 3.6437 0.7925 8 7 4.9727 2.3780 1.5981 9 6 5.0304 2.9928 2.8225 10 1 5.9122 3.5476 3.1072 11 6 3.9549 2.9018 3.6966 12 7 3.2604 1.7885 3.7703 13 14 3.4955 4.3619 4.7673 14 1 4.4272 5.4863 4.4974 15 1 2.1059 4.7848 4.4580 16 1 3.5883 3.9753 6.1981 17 6 6.0190 1.5494 1.1820 18 6 5.9143 0.8401 -0.0084 19 6 6.9514 0.0259 -0.4184 20 6 8.0894 -0.0916 0.3589 21 6 8.1948 0.6090 1.5468 22 6 7.1637 1.4288 1.9605 23 6 3.8112 1.7734 -1.5496 24 6 2.6763 1.9280 -2.5640 25 6 3.5672 0.6837 -2.5956 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 2.4665 1.7481 4.3262 32 1 5.0245 0.9284 -0.6140 33 1 6.8723 -0.5229 -1.3453 34 1 8.8975 -0.7319 0.0375 35 1 9.0847 0.5146 2.1514 36 1 7.2464 1.9752 2.8884 37 1 4.6898 2.4058 -1.6772 38 1 1.6559 1.8080 -2.1998 39 1 2.8084 2.6619 -3.3591 40 1 4.2851 0.5995 -3.4115 41 1 3.1335 -0.2555 -2.2523 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602250769.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:26 Heat of formation + Delta-G solvation = 0.021227 kcal Electronic energy + Delta-G solvation = -24285.994644 eV Core-core repulsion = 20940.151082 eV Total energy + Delta-G solvation = -3345.843562 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.05186 -39.73300 -39.02790 -37.01934 -36.45051 -34.31601 -32.61697 -31.84506 -30.25586 -29.29701 -26.89548 -24.22121 -23.59423 -23.04712 -22.97827 -22.37267 -21.00959 -19.26726 -18.73280 -17.99262 -17.71687 -17.07904 -16.58174 -16.22451 -15.95287 -15.70251 -15.48271 -14.97334 -14.85593 -14.39852 -14.14708 -13.92470 -13.81145 -13.62211 -13.42602 -13.15726 -13.07273 -12.80203 -12.51511 -12.36685 -12.29730 -12.21364 -11.92438 -11.56739 -11.45824 -11.23331 -11.07461 -10.84916 -10.60401 -10.18845 -9.65157 -8.90745 -8.34152 -6.30876 0.57657 0.67813 1.18007 1.32778 1.43588 1.64788 2.16614 2.35314 2.71681 2.86860 3.06390 3.24259 3.60170 3.70363 3.84820 4.02593 4.09059 4.13945 4.25690 4.29781 4.32516 4.37348 4.52668 4.57154 4.76425 4.78511 4.81860 4.90058 4.95466 5.00170 5.08208 5.16348 5.22169 5.28475 5.31103 5.32523 5.69714 5.73066 5.82404 5.91935 6.15603 6.30927 6.69168 6.79315 7.24783 7.71208 8.39614 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.010910 B = 0.009162 C = 0.005858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.895722 B = 3055.222343 C = 4778.331267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.044 3.956 3 O -0.384 6.384 4 C 0.110 3.890 5 H 0.094 0.906 6 C 0.507 3.493 7 O -0.563 6.563 8 N -0.422 5.422 9 C -0.380 4.380 10 H 0.078 0.922 11 C 0.038 3.962 12 N -0.851 5.851 13 Si 0.954 3.046 14 H -0.262 1.262 15 H -0.286 1.286 16 H -0.260 1.260 17 C 0.144 3.856 18 C -0.255 4.255 19 C -0.080 4.080 20 C -0.173 4.173 21 C -0.090 4.090 22 C -0.180 4.180 23 C -0.205 4.205 24 C -0.157 4.157 25 C -0.140 4.140 26 H 0.041 0.959 27 H 0.070 0.930 28 H 0.101 0.899 29 H 0.078 0.922 30 H 0.033 0.967 31 H 0.273 0.727 32 H 0.169 0.831 33 H 0.155 0.845 34 H 0.151 0.849 35 H 0.141 0.859 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.095 0.905 39 H 0.108 0.892 40 H 0.129 0.871 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.204 -9.149 -11.391 14.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.032 4.032 3 O -0.304 6.304 4 C 0.049 3.951 5 H 0.111 0.889 6 C 0.298 3.702 7 O -0.442 6.442 8 N -0.133 5.133 9 C -0.505 4.505 10 H 0.096 0.904 11 C -0.172 4.172 12 N -0.483 5.483 13 Si 0.777 3.223 14 H -0.186 1.186 15 H -0.212 1.212 16 H -0.185 1.185 17 C 0.046 3.954 18 C -0.275 4.275 19 C -0.098 4.098 20 C -0.192 4.192 21 C -0.108 4.108 22 C -0.202 4.202 23 C -0.224 4.224 24 C -0.193 4.193 25 C -0.176 4.176 26 H 0.060 0.940 27 H 0.089 0.911 28 H 0.120 0.880 29 H 0.096 0.904 30 H 0.051 0.949 31 H 0.083 0.917 32 H 0.185 0.815 33 H 0.172 0.828 34 H 0.169 0.831 35 H 0.159 0.841 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.114 0.886 39 H 0.126 0.874 40 H 0.147 0.853 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.548 -8.485 -11.188 14.127 hybrid contribution -0.295 0.966 1.405 1.730 sum 1.254 -7.519 -9.783 12.402 Atomic orbital electron populations 1.21733 0.91999 1.03732 1.02444 1.22908 0.97079 0.82621 1.00578 1.87960 1.19566 1.28437 1.94402 1.22082 0.82668 0.97044 0.93325 0.88880 1.21133 0.81300 0.88334 0.79398 1.90449 1.58476 1.28301 1.66951 1.41278 1.16743 1.40375 1.14869 1.18961 1.06196 1.33637 0.91707 0.90404 1.26096 0.96791 0.97223 0.97089 1.70238 1.16483 1.24211 1.37345 0.85550 0.78301 0.80370 0.78128 1.18579 1.21179 1.18488 1.19101 0.90198 0.91000 0.95068 1.22661 1.04312 1.02329 0.98194 1.21242 0.92093 0.96580 0.99866 1.21327 0.99577 1.02708 0.95599 1.21212 0.97519 0.95003 0.97080 1.20901 0.94363 1.04053 1.00835 1.22439 1.02776 1.07719 0.89426 1.23006 0.95908 1.01053 0.99378 1.23293 1.02544 0.92762 0.99033 0.93990 0.91090 0.88039 0.90402 0.94883 0.91696 0.81450 0.82771 0.83145 0.84075 0.87568 0.87909 0.88638 0.87368 0.85264 0.87511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.71 10.28 71.98 0.74 -2.97 16 2 C 0.04 1.41 6.33 71.98 0.46 1.86 16 3 O -0.38 -16.31 8.25 -136.00 -1.12 -17.43 16 4 C 0.11 4.67 1.94 29.84 0.06 4.73 16 5 H 0.09 3.91 5.19 -2.38 -0.01 3.89 16 6 C 0.51 27.58 5.47 87.65 0.48 28.06 16 7 O -0.56 -34.90 17.09 9.93 0.17 -34.73 16 8 N -0.42 -23.15 2.71 -458.89 -1.24 -24.40 16 9 C -0.38 -22.20 7.53 84.02 0.63 -21.57 16 10 H 0.08 4.51 7.42 -2.91 -0.02 4.48 16 11 C 0.04 2.17 4.74 84.91 0.40 2.57 16 12 N -0.85 -50.02 13.68 21.65 0.30 -49.72 16 13 Si 0.95 46.28 29.68 68.60 2.04 48.31 16 14 H -0.26 -12.50 7.11 99.48 0.71 -11.79 16 15 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 16 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 17 C 0.14 6.75 6.37 38.22 0.24 6.99 16 18 C -0.26 -9.63 7.53 22.40 0.17 -9.46 16 19 C -0.08 -2.32 10.04 22.25 0.22 -2.09 16 20 C -0.17 -4.81 10.04 22.30 0.22 -4.59 16 21 C -0.09 -2.94 10.04 22.25 0.22 -2.72 16 22 C -0.18 -7.77 9.30 22.40 0.21 -7.56 16 23 C -0.20 -6.83 3.59 -10.79 -0.04 -6.87 16 24 C -0.16 -4.30 9.87 30.62 0.30 -4.00 16 25 C -0.14 -3.09 9.88 30.62 0.30 -2.79 16 26 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 28 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.08 1.93 6.01 -2.39 -0.01 1.92 16 30 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 31 H 0.27 15.11 8.32 -92.71 -0.77 14.33 16 32 H 0.17 5.96 1.33 -15.88 -0.02 5.93 16 33 H 0.15 3.15 8.06 -2.91 -0.02 3.13 16 34 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 35 H 0.14 3.70 8.06 -2.91 -0.02 3.67 16 36 H 0.11 4.91 6.66 -2.91 -0.02 4.89 16 37 H 0.10 3.64 7.59 -2.39 -0.02 3.63 16 38 H 0.10 2.84 6.99 -2.39 -0.02 2.82 16 39 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 40 H 0.13 2.09 8.14 -2.38 -0.02 2.07 16 41 H 0.11 2.10 6.21 -2.39 -0.01 2.09 16 Total: -1.00 -75.97 334.40 5.79 -70.19 By element: Atomic # 1 Polarization: 27.16 SS G_CDS: 1.02 Total: 28.19 kcal Atomic # 6 Polarization: -25.03 SS G_CDS: 4.62 Total: -20.41 kcal Atomic # 7 Polarization: -73.17 SS G_CDS: -0.95 Total: -74.12 kcal Atomic # 8 Polarization: -51.21 SS G_CDS: -0.95 Total: -52.16 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.04 Total: 48.31 kcal Total: -75.97 5.79 -70.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602250769.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.209 kcal (2) G-P(sol) polarization free energy of solvation -75.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds