Wall clock time and date at job start Tue Mar 31 2020 05:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46897 * 109.47491 * 2 1 4 4 C 1.46903 * 110.99730 * 283.01944 * 3 2 1 5 5 C 1.53001 * 109.47376 * 85.06238 * 4 3 2 6 6 H 1.09001 * 109.46915 * 301.08823 * 5 4 3 7 7 C 1.52993 * 109.47204 * 181.08542 * 5 4 3 8 8 C 1.52997 * 109.47299 * 61.08188 * 5 4 3 9 9 C 1.50695 * 109.47376 * 185.00007 * 8 5 4 10 10 H 1.07995 * 120.00187 * 0.02562 * 9 8 5 11 11 C 1.37884 * 120.00418 * 179.72533 * 9 8 5 12 12 N 1.31516 * 119.99349 * 0.27959 * 11 9 8 13 13 Si 1.86796 * 120.00154 * 180.27533 * 11 9 8 14 14 H 1.48509 * 109.46813 * 90.00158 * 13 11 9 15 15 H 1.48502 * 109.46981 * 210.00031 * 13 11 9 16 16 H 1.48493 * 109.47047 * 330.00541 * 13 11 9 17 17 C 1.46900 * 111.00307 * 159.06347 * 3 2 1 18 18 H 1.08999 * 110.00984 * 170.64689 * 17 3 2 19 19 C 1.53877 * 110.02332 * 292.02620 * 17 3 2 20 20 C 1.54168 * 108.70288 * 166.46996 * 19 17 3 21 21 S 1.82918 * 105.08351 * 332.09248 * 20 19 17 22 22 O 1.42102 * 109.35595 * 115.52194 * 21 20 19 23 23 O 1.42105 * 109.35186 * 248.71962 * 21 20 19 24 24 C 1.55047 * 110.02705 * 49.21605 * 17 3 2 25 25 H 1.09001 * 109.47171 * 316.27851 * 1 2 3 26 26 H 1.08999 * 109.46938 * 76.27630 * 1 2 3 27 27 H 1.09001 * 109.47273 * 196.28151 * 1 2 3 28 28 H 1.09004 * 109.47183 * 239.99777 * 2 1 3 29 29 H 1.09000 * 109.47076 * 120.00635 * 2 1 3 30 30 H 1.09000 * 109.47285 * 325.06012 * 4 3 2 31 31 H 1.09004 * 109.46817 * 205.05825 * 4 3 2 32 32 H 1.08996 * 109.47361 * 294.83225 * 7 5 4 33 33 H 1.08998 * 109.47035 * 54.83380 * 7 5 4 34 34 H 1.08996 * 109.47333 * 174.83559 * 7 5 4 35 35 H 1.09001 * 109.47029 * 65.00036 * 8 5 4 36 36 H 1.09004 * 109.47577 * 305.00598 * 8 5 4 37 37 H 0.97003 * 119.99649 * 179.97438 * 12 11 9 38 38 H 1.08997 * 109.64763 * 286.31937 * 19 17 3 39 39 H 1.08996 * 109.65064 * 46.62214 * 19 17 3 40 40 H 1.09006 * 110.31745 * 90.99019 * 20 19 17 41 41 H 1.08996 * 110.32286 * 213.18462 * 20 19 17 42 42 H 1.09004 * 110.78676 * 316.54648 * 24 17 3 43 43 H 1.08993 * 110.78819 * 80.00581 * 24 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.9040 1.9842 -1.3362 5 6 0.4956 2.5532 -1.5198 6 1 -0.2372 1.7557 -1.3971 7 6 0.3666 3.1532 -2.9212 8 6 0.2448 3.6414 -0.4739 9 6 -1.1819 4.1158 -0.5747 10 1 -1.8439 3.6840 -1.3108 11 6 -1.6442 5.0967 0.2769 12 7 -0.8382 5.6222 1.1735 13 14 -3.4149 5.6793 0.1570 14 1 -4.2694 4.8522 1.0466 15 1 -3.4973 7.1021 0.5743 16 1 -3.8859 5.5464 -1.2450 17 6 3.4029 1.4543 0.4900 18 1 3.8057 2.4543 0.3296 19 6 3.4498 1.1011 1.9870 20 6 4.9164 0.8484 2.3896 21 16 5.7347 0.2612 0.8626 22 8 6.7214 1.2034 0.4649 23 8 6.0806 -1.1091 1.0108 24 6 4.2786 0.4043 -0.2411 25 1 -0.3633 0.7427 0.7103 26 1 -0.3633 0.2438 -0.9983 27 1 -0.3634 -0.9864 0.2881 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 2.0896 1.2224 -2.0934 31 1 2.6358 2.7854 -1.4397 32 1 1.0348 4.0094 -3.0128 33 1 0.6346 2.4020 -3.6641 34 1 -0.6616 3.4757 -3.0851 35 1 0.9196 4.4787 -0.6520 36 1 0.4236 3.2363 0.5221 37 1 -1.1633 6.3126 1.7724 38 1 3.0467 1.9281 2.5715 39 1 2.8596 0.2033 2.1705 40 1 5.3787 1.7731 2.7352 41 1 4.9698 0.0846 3.1654 42 1 3.7560 -0.5493 -0.3178 43 1 4.5737 0.7652 -1.2263 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602432567.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:28 Heat of formation + Delta-G solvation = -72.170489 kcal Electronic energy + Delta-G solvation = -22402.255155 eV Core-core repulsion = 19188.725077 eV Total energy + Delta-G solvation = -3213.530078 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.16739 -37.17901 -36.18298 -35.62228 -33.51800 -31.96705 -30.67595 -28.87808 -27.01211 -25.86457 -24.40857 -22.86543 -22.29823 -19.86174 -19.12190 -18.85970 -16.98365 -16.82791 -16.39776 -15.83414 -15.45698 -14.89321 -14.59635 -14.49208 -14.34751 -13.76531 -13.28895 -13.06828 -12.63399 -12.50588 -12.31676 -12.24271 -12.17996 -12.10814 -11.96627 -11.61405 -11.36273 -11.25457 -11.00585 -10.98389 -10.88161 -10.85965 -10.52274 -10.43832 -10.29862 -10.17048 -9.46485 -9.04551 -8.86829 -8.27247 -8.02341 -5.91538 -3.91342 -0.11468 2.36747 3.34184 3.40505 3.41126 3.43639 3.77378 3.88901 4.35897 4.51475 4.52155 4.58660 4.61753 4.83745 5.11086 5.25045 5.37280 5.42040 5.44674 5.52076 5.64678 5.67287 5.78352 5.90982 5.97577 6.01495 6.09892 6.16902 6.23010 6.36781 6.51564 6.68978 6.94822 7.05873 7.26568 7.28956 7.42666 7.83157 8.04987 8.18062 8.55350 9.16626 9.71027 11.19577 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.024744 B = 0.004046 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.298080 B = 6919.440252 C = 7180.036733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.046 3.954 3 N -0.502 5.502 4 C 0.062 3.938 5 C -0.094 4.094 6 H 0.070 0.930 7 C -0.133 4.133 8 C 0.037 3.963 9 C -0.511 4.511 10 H 0.051 0.949 11 C 0.057 3.943 12 N -0.895 5.895 13 Si 0.883 3.117 14 H -0.282 1.282 15 H -0.288 1.288 16 H -0.276 1.276 17 C 0.090 3.910 18 H 0.108 0.892 19 C -0.110 4.110 20 C -0.587 4.587 21 S 2.387 3.613 22 O -0.940 6.940 23 O -0.946 6.946 24 C -0.630 4.630 25 H 0.078 0.922 26 H 0.062 0.938 27 H 0.048 0.952 28 H 0.034 0.966 29 H 0.069 0.931 30 H 0.028 0.972 31 H 0.065 0.935 32 H 0.044 0.956 33 H 0.026 0.974 34 H 0.061 0.939 35 H 0.006 0.994 36 H 0.035 0.965 37 H 0.257 0.743 38 H 0.105 0.895 39 H 0.087 0.913 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.140 0.860 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.689 -11.858 -0.132 15.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.081 4.081 3 N -0.224 5.224 4 C -0.065 4.065 5 C -0.112 4.112 6 H 0.089 0.911 7 C -0.191 4.191 8 C 0.000 4.000 9 C -0.550 4.550 10 H 0.069 0.931 11 C -0.144 4.144 12 N -0.535 5.535 13 Si 0.712 3.288 14 H -0.209 1.209 15 H -0.214 1.214 16 H -0.201 1.201 17 C -0.021 4.021 18 H 0.126 0.874 19 C -0.149 4.149 20 C -0.718 4.718 21 S 2.571 3.429 22 O -0.937 6.937 23 O -0.943 6.943 24 C -0.762 4.762 25 H 0.097 0.903 26 H 0.081 0.919 27 H 0.067 0.933 28 H 0.052 0.948 29 H 0.088 0.912 30 H 0.046 0.954 31 H 0.084 0.916 32 H 0.064 0.936 33 H 0.045 0.955 34 H 0.080 0.920 35 H 0.024 0.976 36 H 0.053 0.947 37 H 0.067 0.933 38 H 0.124 0.876 39 H 0.106 0.894 40 H 0.156 0.844 41 H 0.155 0.845 42 H 0.158 0.842 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 10.333 -11.755 0.148 15.652 hybrid contribution -1.276 0.250 -0.420 1.367 sum 9.057 -11.506 -0.272 14.645 Atomic orbital electron populations 1.22000 0.94155 1.01344 1.03566 1.22271 0.97118 0.88746 0.99999 1.61995 1.16057 1.17764 1.26616 1.22409 1.00325 0.97285 0.86507 1.21493 0.93332 1.00064 0.96333 0.91145 1.21710 1.02304 0.99100 0.96002 1.19033 0.95443 0.91507 0.94040 1.21312 0.97029 1.19821 1.16822 0.93098 1.24970 0.96946 0.96787 0.95652 1.69967 1.34978 1.27835 1.20763 0.86739 0.86000 0.77912 0.78164 1.20880 1.21446 1.20097 1.22586 0.89361 0.97607 0.92550 0.87438 1.21997 0.92032 1.05506 0.95368 1.30454 1.08751 1.13064 1.19494 1.09039 0.78110 0.75513 0.80264 1.93619 1.55397 1.63567 1.81094 1.93596 1.82587 1.32691 1.85429 1.31384 1.19948 1.10144 1.14677 0.90264 0.91894 0.93313 0.94773 0.91226 0.95411 0.91630 0.93645 0.95455 0.92039 0.97561 0.94717 0.93316 0.87632 0.89447 0.84366 0.84475 0.84212 0.84474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 8.84 37.16 0.33 -1.76 16 2 C 0.05 0.56 4.18 -3.82 -0.02 0.55 16 3 N -0.50 -7.04 3.53 -224.80 -0.79 -7.83 16 4 C 0.06 0.95 4.17 -3.82 -0.02 0.93 16 5 C -0.09 -1.76 2.22 -90.62 -0.20 -1.96 16 6 H 0.07 1.33 4.59 -51.93 -0.24 1.09 16 7 C -0.13 -2.39 8.92 37.15 0.33 -2.06 16 8 C 0.04 0.89 4.37 -27.89 -0.12 0.77 16 9 C -0.51 -13.82 8.47 -34.44 -0.29 -14.11 16 10 H 0.05 1.35 7.06 -52.49 -0.37 0.98 16 11 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 12 N -0.90 -26.33 13.29 55.43 0.74 -25.60 16 13 Si 0.88 21.37 29.54 -169.99 -5.02 16.35 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 15 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 17 C 0.09 1.02 2.56 -66.17 -0.17 0.85 16 18 H 0.11 1.23 7.72 -51.93 -0.40 0.83 16 19 C -0.11 -1.06 5.86 -25.66 -0.15 -1.21 16 20 C -0.59 -4.51 7.26 37.77 0.27 -4.23 16 21 S 2.39 23.25 6.11 -107.50 -0.66 22.59 16 22 O -0.94 -12.52 18.15 -57.71 -1.05 -13.57 16 23 O -0.95 -12.15 18.15 -57.71 -1.05 -13.19 16 24 C -0.63 -5.79 6.16 38.24 0.24 -5.56 16 25 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 26 H 0.06 0.91 5.88 -51.93 -0.31 0.60 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.03 0.38 6.74 -51.93 -0.35 0.03 16 29 H 0.07 0.71 5.85 -51.93 -0.30 0.41 16 30 H 0.03 0.38 7.53 -51.93 -0.39 -0.01 16 31 H 0.07 1.01 7.53 -51.93 -0.39 0.62 16 32 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 1.19 7.11 -51.93 -0.37 0.82 16 35 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 36 H 0.03 0.89 7.49 -51.93 -0.39 0.50 16 37 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.09 0.76 6.11 -51.93 -0.32 0.44 16 40 H 0.14 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.14 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.14 1.16 6.04 -51.93 -0.31 0.84 16 43 H 0.14 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 339.76 15.07 5.12 5.12 Total: -1.00 -34.33 339.76 -9.68 -44.01 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -7.08 Total: -1.58 kcal Atomic # 6 Polarization: -26.41 SS G_CDS: 0.11 Total: -26.30 kcal Atomic # 7 Polarization: -33.37 SS G_CDS: -0.06 Total: -33.43 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -2.09 Total: -26.76 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: 23.25 SS G_CDS: -0.66 Total: 22.59 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.33 -9.68 -44.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602432567.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.159 kcal (2) G-P(sol) polarization free energy of solvation -34.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds