Wall clock time and date at job start Tue Mar 31 2020 05:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46897 * 109.47491 * 2 1 4 4 C 1.46903 * 110.99730 * 283.01944 * 3 2 1 5 5 C 1.53001 * 109.47376 * 85.06238 * 4 3 2 6 6 H 1.09001 * 109.46915 * 301.08823 * 5 4 3 7 7 C 1.52993 * 109.47204 * 181.08542 * 5 4 3 8 8 C 1.52997 * 109.47299 * 61.08188 * 5 4 3 9 9 C 1.50695 * 109.47376 * 185.00007 * 8 5 4 10 10 H 1.07995 * 120.00187 * 0.02562 * 9 8 5 11 11 C 1.37884 * 120.00418 * 179.72533 * 9 8 5 12 12 N 1.31516 * 119.99349 * 0.27959 * 11 9 8 13 13 Si 1.86796 * 120.00154 * 180.27533 * 11 9 8 14 14 H 1.48509 * 109.46813 * 90.00158 * 13 11 9 15 15 H 1.48502 * 109.46981 * 210.00031 * 13 11 9 16 16 H 1.48493 * 109.47047 * 330.00541 * 13 11 9 17 17 C 1.46900 * 111.00307 * 159.06347 * 3 2 1 18 18 H 1.08999 * 110.00984 * 170.64689 * 17 3 2 19 19 C 1.53877 * 110.02332 * 292.02620 * 17 3 2 20 20 C 1.54168 * 108.70288 * 166.46996 * 19 17 3 21 21 S 1.82918 * 105.08351 * 332.09248 * 20 19 17 22 22 O 1.42102 * 109.35595 * 115.52194 * 21 20 19 23 23 O 1.42105 * 109.35186 * 248.71962 * 21 20 19 24 24 C 1.55047 * 110.02705 * 49.21605 * 17 3 2 25 25 H 1.09001 * 109.47171 * 316.27851 * 1 2 3 26 26 H 1.08999 * 109.46938 * 76.27630 * 1 2 3 27 27 H 1.09001 * 109.47273 * 196.28151 * 1 2 3 28 28 H 1.09004 * 109.47183 * 239.99777 * 2 1 3 29 29 H 1.09000 * 109.47076 * 120.00635 * 2 1 3 30 30 H 1.09000 * 109.47285 * 325.06012 * 4 3 2 31 31 H 1.09004 * 109.46817 * 205.05825 * 4 3 2 32 32 H 1.08996 * 109.47361 * 294.83225 * 7 5 4 33 33 H 1.08998 * 109.47035 * 54.83380 * 7 5 4 34 34 H 1.08996 * 109.47333 * 174.83559 * 7 5 4 35 35 H 1.09001 * 109.47029 * 65.00036 * 8 5 4 36 36 H 1.09004 * 109.47577 * 305.00598 * 8 5 4 37 37 H 0.97003 * 119.99649 * 179.97438 * 12 11 9 38 38 H 1.08997 * 109.64763 * 286.31937 * 19 17 3 39 39 H 1.08996 * 109.65064 * 46.62214 * 19 17 3 40 40 H 1.09006 * 110.31745 * 90.99019 * 20 19 17 41 41 H 1.08996 * 110.32286 * 213.18462 * 20 19 17 42 42 H 1.09004 * 110.78676 * 316.54648 * 24 17 3 43 43 H 1.08993 * 110.78819 * 80.00581 * 24 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.9040 1.9842 -1.3362 5 6 0.4956 2.5532 -1.5198 6 1 -0.2372 1.7557 -1.3971 7 6 0.3666 3.1532 -2.9212 8 6 0.2448 3.6414 -0.4739 9 6 -1.1819 4.1158 -0.5747 10 1 -1.8439 3.6840 -1.3108 11 6 -1.6442 5.0967 0.2769 12 7 -0.8382 5.6222 1.1735 13 14 -3.4149 5.6793 0.1570 14 1 -4.2694 4.8522 1.0466 15 1 -3.4973 7.1021 0.5743 16 1 -3.8859 5.5464 -1.2450 17 6 3.4029 1.4543 0.4900 18 1 3.8057 2.4543 0.3296 19 6 3.4498 1.1011 1.9870 20 6 4.9164 0.8484 2.3896 21 16 5.7347 0.2612 0.8626 22 8 6.7214 1.2034 0.4649 23 8 6.0806 -1.1091 1.0108 24 6 4.2786 0.4043 -0.2411 25 1 -0.3633 0.7427 0.7103 26 1 -0.3633 0.2438 -0.9983 27 1 -0.3634 -0.9864 0.2881 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 2.0896 1.2224 -2.0934 31 1 2.6358 2.7854 -1.4397 32 1 1.0348 4.0094 -3.0128 33 1 0.6346 2.4020 -3.6641 34 1 -0.6616 3.4757 -3.0851 35 1 0.9196 4.4787 -0.6520 36 1 0.4236 3.2363 0.5221 37 1 -1.1633 6.3126 1.7724 38 1 3.0467 1.9281 2.5715 39 1 2.8596 0.2033 2.1705 40 1 5.3787 1.7731 2.7352 41 1 4.9698 0.0846 3.1654 42 1 3.7560 -0.5493 -0.3178 43 1 4.5737 0.7652 -1.2263 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602432567.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:27 Heat of formation + Delta-G solvation = -96.688600 kcal Electronic energy + Delta-G solvation = -22403.318340 eV Core-core repulsion = 19188.725077 eV Total energy + Delta-G solvation = -3214.593263 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.18874 -38.08484 -37.14461 -36.90933 -34.91846 -33.72675 -31.61724 -29.84993 -28.88361 -26.96913 -25.52162 -24.56084 -23.32874 -20.79869 -20.56126 -19.76774 -18.41935 -17.83707 -17.64131 -16.84564 -16.53685 -16.42164 -15.76406 -15.60096 -15.24066 -14.91101 -14.65095 -14.35785 -13.97660 -13.69687 -13.38847 -13.26975 -13.26616 -13.13195 -13.03687 -12.99311 -12.79060 -12.74222 -12.45321 -12.30195 -12.20270 -12.01689 -12.00359 -11.72206 -11.48467 -11.28901 -11.03016 -10.81444 -10.65913 -10.38319 -9.08955 -8.06887 -6.13236 -0.89149 1.41911 1.42453 1.52336 1.61711 2.47647 2.61008 2.90268 3.07218 3.26738 3.52546 3.72957 3.79395 3.95915 4.03668 4.14699 4.29801 4.42226 4.52570 4.56832 4.64545 4.68710 4.77038 4.82129 4.85904 4.90955 4.98864 5.03501 5.11785 5.19038 5.25904 5.38712 5.51659 5.57059 5.63172 5.75382 6.05879 6.12897 6.27063 6.31613 6.46487 7.06245 7.53337 9.04224 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.024744 B = 0.004046 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.298080 B = 6919.440252 C = 7180.036733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.043 3.957 3 N -0.527 5.527 4 C 0.068 3.932 5 C -0.089 4.089 6 H 0.072 0.928 7 C -0.130 4.130 8 C 0.049 3.951 9 C -0.523 4.523 10 H 0.052 0.948 11 C 0.001 3.999 12 N -0.932 5.932 13 Si 0.948 3.052 14 H -0.276 1.276 15 H -0.288 1.288 16 H -0.267 1.267 17 C 0.083 3.917 18 H 0.098 0.902 19 C -0.111 4.111 20 C -0.566 4.566 21 S 2.403 3.597 22 O -0.980 6.980 23 O -0.976 6.976 24 C -0.617 4.617 25 H 0.042 0.958 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.054 0.946 29 H 0.092 0.908 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.037 0.963 33 H 0.062 0.938 34 H 0.041 0.959 35 H -0.027 1.027 36 H 0.012 0.988 37 H 0.257 0.743 38 H 0.092 0.908 39 H 0.101 0.899 40 H 0.150 0.850 41 H 0.162 0.838 42 H 0.156 0.844 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.458 -13.497 -0.471 16.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.084 4.084 3 N -0.250 5.250 4 C -0.059 4.059 5 C -0.108 4.108 6 H 0.090 0.910 7 C -0.187 4.187 8 C 0.012 3.988 9 C -0.561 4.561 10 H 0.071 0.929 11 C -0.195 4.195 12 N -0.574 5.574 13 Si 0.774 3.226 14 H -0.201 1.201 15 H -0.213 1.213 16 H -0.192 1.192 17 C -0.028 4.028 18 H 0.117 0.883 19 C -0.149 4.149 20 C -0.699 4.699 21 S 2.590 3.410 22 O -0.977 6.977 23 O -0.973 6.973 24 C -0.750 4.750 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.090 0.910 28 H 0.072 0.928 29 H 0.111 0.889 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.056 0.944 33 H 0.080 0.920 34 H 0.060 0.940 35 H -0.009 1.009 36 H 0.030 0.970 37 H 0.066 0.934 38 H 0.111 0.889 39 H 0.119 0.881 40 H 0.168 0.832 41 H 0.180 0.820 42 H 0.174 0.826 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 10.121 -13.415 -0.212 16.806 hybrid contribution -1.246 0.769 -0.288 1.492 sum 8.875 -12.646 -0.499 15.457 Atomic orbital electron populations 1.21946 0.95577 1.01445 1.01782 1.22366 0.95886 0.88072 1.02036 1.61872 1.18024 1.19159 1.25899 1.22222 0.97491 0.97903 0.88295 1.21372 0.96031 0.98321 0.95045 0.91026 1.21649 1.00914 0.99819 0.96364 1.18828 0.93315 0.91869 0.94751 1.21746 0.98429 1.19559 1.16364 0.92933 1.25794 1.01107 0.97179 0.95467 1.70101 1.36952 1.28570 1.21738 0.85712 0.81070 0.77283 0.78546 1.20145 1.21349 1.19151 1.22615 0.88296 0.98055 0.93818 0.88347 1.21990 0.93299 1.05612 0.94043 1.30331 1.06796 1.14326 1.18425 1.08421 0.77780 0.74123 0.80654 1.93567 1.57632 1.64306 1.82171 1.93555 1.83444 1.34237 1.86065 1.31288 1.18793 1.10177 1.14708 0.93868 0.92991 0.91004 0.92837 0.88941 0.92830 0.92180 0.94388 0.91956 0.94031 1.00913 0.96964 0.93372 0.88916 0.88092 0.83209 0.81990 0.82574 0.83595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.89 8.84 71.98 0.64 -3.25 16 2 C 0.04 0.94 4.18 86.30 0.36 1.30 16 3 N -0.53 -14.13 3.53 -865.14 -3.05 -17.19 16 4 C 0.07 2.01 4.17 86.30 0.36 2.37 16 5 C -0.09 -3.33 2.22 -10.80 -0.02 -3.36 16 6 H 0.07 2.68 4.59 -2.39 -0.01 2.67 16 7 C -0.13 -4.54 8.92 71.98 0.64 -3.90 16 8 C 0.05 2.47 4.37 29.85 0.13 2.60 16 9 C -0.52 -28.79 8.47 25.60 0.22 -28.57 16 10 H 0.05 2.81 7.06 -2.91 -0.02 2.79 16 11 C 0.00 0.08 5.46 84.66 0.46 0.54 16 12 N -0.93 -56.19 13.29 21.45 0.28 -55.90 16 13 Si 0.95 44.20 29.54 68.60 2.03 46.22 16 14 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 15 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 16 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 17 C 0.08 1.76 2.56 45.91 0.12 1.87 16 18 H 0.10 2.23 7.72 -2.39 -0.02 2.21 16 19 C -0.11 -1.92 5.86 31.29 0.18 -1.74 16 20 C -0.57 -7.38 7.26 72.38 0.53 -6.85 16 21 S 2.40 43.04 6.11 -56.49 -0.34 42.69 16 22 O -0.98 -25.50 18.15 -127.49 -2.31 -27.82 16 23 O -0.98 -23.44 18.15 -127.49 -2.31 -25.75 16 24 C -0.62 -9.90 6.16 72.68 0.45 -9.45 16 25 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.05 1.43 5.88 -2.39 -0.01 1.42 16 27 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.05 0.98 6.74 -2.38 -0.02 0.97 16 29 H 0.09 1.57 5.85 -2.39 -0.01 1.56 16 30 H 0.05 1.31 7.53 -2.39 -0.02 1.29 16 31 H 0.06 1.81 7.53 -2.39 -0.02 1.80 16 32 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.04 1.59 7.11 -2.39 -0.02 1.57 16 35 H -0.03 -1.54 8.14 -2.39 -0.02 -1.56 16 36 H 0.01 0.65 7.49 -2.38 -0.02 0.63 16 37 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 38 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.10 1.48 6.11 -2.39 -0.01 1.46 16 40 H 0.15 1.71 8.14 -2.38 -0.02 1.69 16 41 H 0.16 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.16 2.03 6.04 -2.38 -0.01 2.01 16 43 H 0.15 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -75.34 339.76 -0.67 -76.01 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: 0.98 Total: 10.16 kcal Atomic # 6 Polarization: -52.48 SS G_CDS: 4.06 Total: -48.43 kcal Atomic # 7 Polarization: -70.32 SS G_CDS: -2.77 Total: -73.09 kcal Atomic # 8 Polarization: -48.94 SS G_CDS: -4.63 Total: -53.57 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Atomic # 16 Polarization: 43.04 SS G_CDS: -0.34 Total: 42.69 kcal Total: -75.34 -0.67 -76.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602432567.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.675 kcal (2) G-P(sol) polarization free energy of solvation -75.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds