Wall clock time and date at job start Tue Mar 31 2020 05:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46900 * 109.47048 * 2 1 4 4 C 1.46894 * 111.00120 * 61.25034 * 3 2 1 5 5 C 1.52993 * 109.47532 * 66.04436 * 4 3 2 6 6 H 1.09003 * 109.47048 * 305.00232 * 5 4 3 7 7 C 1.52998 * 109.47115 * 65.00080 * 5 4 3 8 8 C 1.52998 * 109.47434 * 185.00310 * 5 4 3 9 9 C 1.50700 * 109.47466 * 174.99930 * 8 5 4 10 10 H 1.08009 * 119.99625 * 359.97438 * 9 8 5 11 11 C 1.37877 * 120.00404 * 179.97438 * 9 8 5 12 12 N 1.31515 * 119.99843 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00003 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.46576 * 180.02562 * 13 11 9 15 15 H 1.48495 * 109.47043 * 60.00624 * 13 11 9 16 16 H 1.48502 * 109.47180 * 300.00083 * 13 11 9 17 17 C 1.46899 * 111.00016 * 297.29050 * 3 2 1 18 18 H 1.09003 * 109.64274 * 64.08724 * 17 3 2 19 19 C 1.53875 * 109.65049 * 303.65886 * 17 3 2 20 20 C 1.55046 * 106.62665 * 192.96358 * 19 17 3 21 21 S 1.83294 * 102.56467 * 42.43294 * 20 19 17 22 22 O 1.42104 * 109.34974 * 90.18502 * 21 20 19 23 23 O 1.42095 * 109.35118 * 223.38791 * 21 20 19 24 24 C 1.54164 * 109.64819 * 184.37944 * 17 3 2 25 25 H 1.08998 * 109.46915 * 175.46260 * 1 2 3 26 26 H 1.08992 * 109.47582 * 295.46758 * 1 2 3 27 27 H 1.09004 * 109.46852 * 55.46801 * 1 2 3 28 28 H 1.09002 * 109.47207 * 240.00035 * 2 1 3 29 29 H 1.08999 * 109.46960 * 120.00327 * 2 1 3 30 30 H 1.09003 * 109.47043 * 306.04321 * 4 3 2 31 31 H 1.09001 * 109.47372 * 186.05028 * 4 3 2 32 32 H 1.08994 * 109.47134 * 60.00321 * 7 5 4 33 33 H 1.09004 * 109.47243 * 180.02562 * 7 5 4 34 34 H 1.09006 * 109.47352 * 300.00164 * 7 5 4 35 35 H 1.08995 * 109.47394 * 54.99941 * 8 5 4 36 36 H 1.08998 * 109.46830 * 294.99908 * 8 5 4 37 37 H 0.97005 * 119.99620 * 359.97438 * 12 11 9 38 38 H 1.09002 * 110.02501 * 312.25611 * 19 17 3 39 39 H 1.09001 * 110.02715 * 73.61979 * 19 17 3 40 40 H 1.08994 * 110.79001 * 160.69842 * 20 19 17 41 41 H 1.09000 * 110.78798 * 283.97411 * 20 19 17 42 42 H 1.08996 * 110.32502 * 266.66995 * 24 17 3 43 43 H 1.09006 * 110.31856 * 28.86598 * 24 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5732 2.1012 1.2023 5 6 2.2304 1.4828 2.4378 6 1 2.0190 0.4138 2.4651 7 6 3.7432 1.7022 2.3745 8 6 1.6713 2.1455 3.6985 9 6 2.2257 1.4544 4.9174 10 1 2.9083 0.6250 4.8043 11 6 1.8617 1.8807 6.1771 12 7 1.0302 2.8903 6.3149 13 14 2.5485 1.0234 7.6880 14 1 2.0059 1.6668 8.9115 15 1 4.0296 1.1302 7.6874 16 1 2.1553 -0.4085 7.6663 17 6 1.6023 2.0909 -1.2188 18 1 0.5154 2.1702 -1.2423 19 6 2.0915 1.3193 -2.4569 20 6 1.9155 2.2691 -3.6697 21 16 2.5024 3.8743 -3.0075 22 8 3.8973 4.0008 -3.2473 23 8 1.6151 4.9056 -3.4178 24 6 2.2226 3.5021 -1.2386 25 1 -0.3633 -1.0244 -0.0813 26 1 -0.3634 0.4418 0.9277 27 1 -0.3633 0.5826 -0.8466 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 0.4895 2.0237 1.2900 31 1 1.8573 3.1508 1.1265 32 1 3.9545 2.7711 2.3472 33 1 4.2115 1.2612 3.2545 34 1 4.1415 1.2300 1.4764 35 1 0.5842 2.0665 3.6990 36 1 1.9591 3.1967 3.7144 37 1 0.6733 3.3352 5.5302 38 1 3.1422 1.0538 -2.3401 39 1 1.4927 0.4193 -2.5966 40 1 2.5344 1.9464 -4.5068 41 1 0.8681 2.3289 -3.9654 42 1 1.5324 4.2252 -0.8042 43 1 3.1683 3.5075 -0.6966 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602432569.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:31 Heat of formation + Delta-G solvation = -81.938482 kcal Electronic energy + Delta-G solvation = -22214.672415 eV Core-core repulsion = 19000.718765 eV Total energy + Delta-G solvation = -3213.953650 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.41398 -37.23804 -36.24469 -35.76979 -33.96879 -32.13529 -30.87209 -28.59611 -26.57596 -26.28664 -24.41393 -23.37814 -22.34584 -20.06770 -19.13445 -18.72346 -17.28294 -17.10037 -16.71559 -15.89194 -15.57681 -15.31892 -14.64303 -14.48297 -14.11237 -13.76014 -13.53528 -13.18218 -13.09285 -12.72811 -12.44549 -12.35072 -12.23167 -12.19004 -12.15618 -11.77225 -11.67981 -11.41632 -11.24389 -11.04268 -10.97819 -10.72792 -10.64364 -10.50534 -10.27265 -10.11064 -9.73296 -9.47482 -8.50843 -8.32003 -8.25442 -6.34549 -4.03006 -0.18640 2.28141 3.35090 3.43570 3.45321 3.62643 3.64070 3.91780 4.11824 4.28045 4.48212 4.55428 4.60592 4.69551 5.00370 5.15294 5.18766 5.21814 5.32453 5.37076 5.41759 5.46942 5.57065 5.61808 5.72547 5.80988 5.92391 6.04514 6.17669 6.24884 6.39144 6.53416 6.81296 6.95318 7.04650 7.14539 7.18553 7.38171 7.55427 8.23904 8.47789 8.90142 9.68425 11.05740 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.026679 B = 0.003661 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.278868 B = 7645.992383 C = 8058.429083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.042 3.958 3 N -0.519 5.519 4 C 0.050 3.950 5 C -0.073 4.073 6 H 0.059 0.941 7 C -0.124 4.124 8 C 0.014 3.986 9 C -0.593 4.593 10 H 0.049 0.951 11 C 0.013 3.987 12 N -0.915 5.915 13 Si 1.066 2.934 14 H -0.283 1.283 15 H -0.288 1.288 16 H -0.289 1.289 17 C 0.087 3.913 18 H 0.064 0.936 19 C -0.116 4.116 20 C -0.588 4.588 21 S 2.391 3.609 22 O -0.936 6.936 23 O -0.943 6.943 24 C -0.587 4.587 25 H 0.060 0.940 26 H 0.064 0.936 27 H 0.052 0.948 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.036 0.964 31 H 0.072 0.928 32 H 0.038 0.962 33 H 0.055 0.945 34 H 0.044 0.956 35 H 0.002 0.998 36 H 0.006 0.994 37 H 0.267 0.733 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.137 0.863 41 H 0.135 0.865 42 H 0.137 0.863 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.154 -4.155 -19.996 20.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.086 4.086 3 N -0.243 5.243 4 C -0.077 4.077 5 C -0.092 4.092 6 H 0.077 0.923 7 C -0.181 4.181 8 C -0.023 4.023 9 C -0.632 4.632 10 H 0.068 0.932 11 C -0.190 4.190 12 N -0.552 5.552 13 Si 0.895 3.105 14 H -0.209 1.209 15 H -0.215 1.215 16 H -0.215 1.215 17 C -0.023 4.023 18 H 0.082 0.918 19 C -0.155 4.155 20 C -0.718 4.718 21 S 2.574 3.426 22 O -0.933 6.933 23 O -0.940 6.940 24 C -0.717 4.717 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.092 0.908 29 H 0.106 0.894 30 H 0.054 0.946 31 H 0.090 0.910 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.020 0.980 36 H 0.024 0.976 37 H 0.078 0.922 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.156 0.844 41 H 0.153 0.847 42 H 0.156 0.844 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 1.011 -3.329 -18.788 19.107 hybrid contribution -1.295 -0.658 -1.226 1.901 sum -0.285 -3.987 -20.014 20.409 Atomic orbital electron populations 1.22446 0.98373 1.02272 1.02349 1.22286 0.92919 0.90095 1.03288 1.62403 1.59000 1.02077 1.00793 1.22479 0.97712 0.98156 0.89303 1.21076 0.95582 0.99462 0.93055 0.92303 1.21598 0.95815 1.00314 1.00416 1.19247 0.95129 0.95635 0.92303 1.22010 1.30487 1.18583 0.92097 0.93241 1.25810 0.95530 0.96442 1.01227 1.70790 1.29630 1.21015 1.33736 0.83578 0.75828 0.75377 0.75731 1.20857 1.21455 1.21545 1.21941 0.98210 0.90058 0.92062 0.91817 1.22312 1.04933 0.98987 0.89263 1.30599 1.12793 1.20622 1.07766 1.08998 0.75781 0.78042 0.79781 1.93628 1.29911 1.85883 1.83834 1.93609 1.66701 1.53313 1.80390 1.30686 1.12254 1.05117 1.23672 0.92123 0.91654 0.92889 0.90775 0.89444 0.94555 0.90976 0.94293 0.92592 0.93678 0.97983 0.97573 0.92227 0.88318 0.88540 0.84447 0.84655 0.84436 0.83021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.08 9.22 37.16 0.34 -1.74 16 2 C 0.04 0.47 5.49 -3.83 -0.02 0.44 16 3 N -0.52 -6.30 4.00 -225.38 -0.90 -7.20 16 4 C 0.05 0.78 3.98 -3.83 -0.02 0.76 16 5 C -0.07 -1.40 2.26 -90.63 -0.20 -1.61 16 6 H 0.06 1.15 6.31 -51.93 -0.33 0.83 16 7 C -0.12 -2.30 8.89 37.16 0.33 -1.97 16 8 C 0.01 0.35 3.76 -27.88 -0.10 0.25 16 9 C -0.59 -16.42 8.41 -34.44 -0.29 -16.71 16 10 H 0.05 1.35 7.06 -52.48 -0.37 0.98 16 11 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 12 N -0.92 -27.87 13.65 55.43 0.76 -27.12 16 13 Si 1.07 25.15 29.90 -169.99 -5.08 20.07 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 17 C 0.09 0.82 1.90 -66.65 -0.13 0.70 16 18 H 0.06 0.56 6.50 -51.93 -0.34 0.22 16 19 C -0.12 -0.82 4.92 -25.19 -0.12 -0.94 16 20 C -0.59 -3.50 7.31 38.24 0.28 -3.22 16 21 S 2.39 21.90 6.11 -107.50 -0.66 21.24 16 22 O -0.94 -11.96 18.15 -57.71 -1.05 -13.00 16 23 O -0.94 -11.84 18.14 -57.71 -1.05 -12.89 16 24 C -0.59 -5.47 5.41 37.77 0.20 -5.26 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.84 6.54 -51.93 -0.34 0.50 16 27 H 0.05 0.49 6.33 -51.93 -0.33 0.16 16 28 H 0.07 0.66 6.42 -51.93 -0.33 0.32 16 29 H 0.09 1.13 6.32 -51.93 -0.33 0.80 16 30 H 0.04 0.57 6.14 -51.93 -0.32 0.25 16 31 H 0.07 1.10 6.65 -51.93 -0.35 0.76 16 32 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.06 1.14 6.95 -51.93 -0.36 0.78 16 34 H 0.04 0.73 7.75 -51.93 -0.40 0.33 16 35 H 0.00 0.05 8.01 -51.93 -0.42 -0.37 16 36 H 0.01 0.16 8.01 -51.93 -0.42 -0.26 16 37 H 0.27 8.11 7.22 -40.82 -0.29 7.81 16 38 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.10 0.57 7.17 -51.93 -0.37 0.20 16 40 H 0.14 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.14 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.14 1.19 8.00 -51.93 -0.42 0.77 16 43 H 0.15 1.51 8.01 -51.93 -0.42 1.10 16 LS Contribution 338.36 15.07 5.10 5.10 Total: -1.00 -35.29 338.36 -9.74 -45.03 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -7.03 Total: -2.20 kcal Atomic # 6 Polarization: -29.20 SS G_CDS: 0.17 Total: -29.02 kcal Atomic # 7 Polarization: -34.17 SS G_CDS: -0.14 Total: -34.32 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -2.09 Total: -25.90 kcal Atomic # 14 Polarization: 25.15 SS G_CDS: -5.08 Total: 20.07 kcal Atomic # 16 Polarization: 21.90 SS G_CDS: -0.66 Total: 21.24 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.29 -9.74 -45.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602432569.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.906 kcal (2) G-P(sol) polarization free energy of solvation -35.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds