Wall clock time and date at job start Tue Mar 31 2020 05:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46900 * 109.47048 * 2 1 4 4 C 1.46894 * 111.00120 * 61.25034 * 3 2 1 5 5 C 1.52993 * 109.47532 * 66.04436 * 4 3 2 6 6 H 1.09003 * 109.47048 * 305.00232 * 5 4 3 7 7 C 1.52998 * 109.47115 * 65.00080 * 5 4 3 8 8 C 1.52998 * 109.47434 * 185.00310 * 5 4 3 9 9 C 1.50700 * 109.47466 * 174.99930 * 8 5 4 10 10 H 1.08009 * 119.99625 * 359.97438 * 9 8 5 11 11 C 1.37877 * 120.00404 * 179.97438 * 9 8 5 12 12 N 1.31515 * 119.99843 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00003 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.46576 * 180.02562 * 13 11 9 15 15 H 1.48495 * 109.47043 * 60.00624 * 13 11 9 16 16 H 1.48502 * 109.47180 * 300.00083 * 13 11 9 17 17 C 1.46899 * 111.00016 * 297.29050 * 3 2 1 18 18 H 1.09003 * 109.64274 * 64.08724 * 17 3 2 19 19 C 1.53875 * 109.65049 * 303.65886 * 17 3 2 20 20 C 1.55046 * 106.62665 * 192.96358 * 19 17 3 21 21 S 1.83294 * 102.56467 * 42.43294 * 20 19 17 22 22 O 1.42104 * 109.34974 * 90.18502 * 21 20 19 23 23 O 1.42095 * 109.35118 * 223.38791 * 21 20 19 24 24 C 1.54164 * 109.64819 * 184.37944 * 17 3 2 25 25 H 1.08998 * 109.46915 * 175.46260 * 1 2 3 26 26 H 1.08992 * 109.47582 * 295.46758 * 1 2 3 27 27 H 1.09004 * 109.46852 * 55.46801 * 1 2 3 28 28 H 1.09002 * 109.47207 * 240.00035 * 2 1 3 29 29 H 1.08999 * 109.46960 * 120.00327 * 2 1 3 30 30 H 1.09003 * 109.47043 * 306.04321 * 4 3 2 31 31 H 1.09001 * 109.47372 * 186.05028 * 4 3 2 32 32 H 1.08994 * 109.47134 * 60.00321 * 7 5 4 33 33 H 1.09004 * 109.47243 * 180.02562 * 7 5 4 34 34 H 1.09006 * 109.47352 * 300.00164 * 7 5 4 35 35 H 1.08995 * 109.47394 * 54.99941 * 8 5 4 36 36 H 1.08998 * 109.46830 * 294.99908 * 8 5 4 37 37 H 0.97005 * 119.99620 * 359.97438 * 12 11 9 38 38 H 1.09002 * 110.02501 * 312.25611 * 19 17 3 39 39 H 1.09001 * 110.02715 * 73.61979 * 19 17 3 40 40 H 1.08994 * 110.79001 * 160.69842 * 20 19 17 41 41 H 1.09000 * 110.78798 * 283.97411 * 20 19 17 42 42 H 1.08996 * 110.32502 * 266.66995 * 24 17 3 43 43 H 1.09006 * 110.31856 * 28.86598 * 24 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5732 2.1012 1.2023 5 6 2.2304 1.4828 2.4378 6 1 2.0190 0.4138 2.4651 7 6 3.7432 1.7022 2.3745 8 6 1.6713 2.1455 3.6985 9 6 2.2257 1.4544 4.9174 10 1 2.9083 0.6250 4.8043 11 6 1.8617 1.8807 6.1771 12 7 1.0302 2.8903 6.3149 13 14 2.5485 1.0234 7.6880 14 1 2.0059 1.6668 8.9115 15 1 4.0296 1.1302 7.6874 16 1 2.1553 -0.4085 7.6663 17 6 1.6023 2.0909 -1.2188 18 1 0.5154 2.1702 -1.2423 19 6 2.0915 1.3193 -2.4569 20 6 1.9155 2.2691 -3.6697 21 16 2.5024 3.8743 -3.0075 22 8 3.8973 4.0008 -3.2473 23 8 1.6151 4.9056 -3.4178 24 6 2.2226 3.5021 -1.2386 25 1 -0.3633 -1.0244 -0.0813 26 1 -0.3634 0.4418 0.9277 27 1 -0.3633 0.5826 -0.8466 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 0.4895 2.0237 1.2900 31 1 1.8573 3.1508 1.1265 32 1 3.9545 2.7711 2.3472 33 1 4.2115 1.2612 3.2545 34 1 4.1415 1.2300 1.4764 35 1 0.5842 2.0665 3.6990 36 1 1.9591 3.1967 3.7144 37 1 0.6733 3.3352 5.5302 38 1 3.1422 1.0538 -2.3401 39 1 1.4927 0.4193 -2.5966 40 1 2.5344 1.9464 -4.5068 41 1 0.8681 2.3289 -3.9654 42 1 1.5324 4.2252 -0.8042 43 1 3.1683 3.5075 -0.6966 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602432569.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:31 Heat of formation + Delta-G solvation = -107.928850 kcal Electronic energy + Delta-G solvation = -22215.799442 eV Core-core repulsion = 19000.718765 eV Total energy + Delta-G solvation = -3215.080677 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.37177 -38.08998 -37.25997 -37.01319 -35.26638 -33.86020 -31.67519 -29.56080 -28.37847 -27.47677 -25.54324 -24.71221 -23.59847 -21.18594 -20.14511 -19.72855 -18.90946 -18.00075 -17.78182 -16.71483 -16.62276 -16.24499 -15.84481 -15.61809 -15.52806 -15.04996 -14.92522 -14.27567 -14.04776 -13.80724 -13.54733 -13.45748 -13.23194 -13.18725 -13.07979 -12.98665 -12.94182 -12.72807 -12.52693 -12.40796 -12.07820 -11.98462 -11.95726 -11.74714 -11.58191 -11.32738 -11.23181 -11.12963 -10.54750 -10.51717 -9.24248 -8.64952 -6.34003 -0.89370 1.51952 1.60211 1.60867 1.78987 2.57128 2.65863 2.80659 3.13913 3.19007 3.42905 3.64786 3.81225 3.93627 4.02419 4.10541 4.21479 4.29355 4.35520 4.44846 4.50692 4.60539 4.68701 4.75014 4.78105 4.83140 4.84710 4.97713 5.00280 5.07464 5.11832 5.16675 5.30211 5.37487 5.40820 5.51768 5.66379 5.99497 6.10136 6.17692 6.23778 6.63004 7.46806 8.75604 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.026679 B = 0.003661 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.278868 B = 7645.992383 C = 8058.429083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.039 3.961 3 N -0.521 5.521 4 C 0.062 3.938 5 C -0.064 4.064 6 H 0.056 0.944 7 C -0.115 4.115 8 C 0.017 3.983 9 C -0.603 4.603 10 H 0.052 0.948 11 C -0.042 4.042 12 N -0.943 5.943 13 Si 1.114 2.886 14 H -0.286 1.286 15 H -0.270 1.270 16 H -0.269 1.269 17 C 0.081 3.919 18 H 0.076 0.924 19 C -0.116 4.116 20 C -0.553 4.553 21 S 2.397 3.603 22 O -0.977 6.977 23 O -0.983 6.983 24 C -0.591 4.591 25 H 0.073 0.927 26 H 0.033 0.967 27 H 0.071 0.929 28 H 0.108 0.892 29 H 0.066 0.934 30 H 0.030 0.970 31 H 0.069 0.931 32 H 0.033 0.967 33 H 0.033 0.967 34 H 0.072 0.928 35 H -0.020 1.020 36 H -0.017 1.017 37 H 0.253 0.747 38 H 0.102 0.898 39 H 0.122 0.878 40 H 0.163 0.837 41 H 0.161 0.839 42 H 0.137 0.863 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.386 -6.428 -21.991 22.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.088 4.088 3 N -0.245 5.245 4 C -0.066 4.066 5 C -0.083 4.083 6 H 0.074 0.926 7 C -0.172 4.172 8 C -0.021 4.021 9 C -0.641 4.641 10 H 0.070 0.930 11 C -0.239 4.239 12 N -0.581 5.581 13 Si 0.935 3.065 14 H -0.212 1.212 15 H -0.195 1.195 16 H -0.194 1.194 17 C -0.029 4.029 18 H 0.094 0.906 19 C -0.155 4.155 20 C -0.687 4.687 21 S 2.584 3.416 22 O -0.975 6.975 23 O -0.980 6.980 24 C -0.721 4.721 25 H 0.092 0.908 26 H 0.052 0.948 27 H 0.090 0.910 28 H 0.126 0.874 29 H 0.084 0.916 30 H 0.048 0.952 31 H 0.088 0.912 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.091 0.909 35 H -0.001 1.001 36 H 0.002 0.998 37 H 0.063 0.937 38 H 0.121 0.879 39 H 0.141 0.859 40 H 0.181 0.819 41 H 0.179 0.821 42 H 0.156 0.844 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.262 -5.573 -20.805 21.576 hybrid contribution -1.403 0.003 -0.654 1.548 sum -0.141 -5.570 -21.460 22.171 Atomic orbital electron populations 1.22413 0.97994 1.03194 1.01505 1.22373 0.93250 0.89292 1.03879 1.62303 1.59223 1.02557 1.00400 1.22147 0.96882 0.98045 0.89511 1.20886 0.96127 0.98871 0.92440 0.92571 1.21503 0.95044 1.00029 1.00647 1.19185 0.93811 0.94575 0.94513 1.22428 1.29950 1.18416 0.93266 0.93018 1.27351 0.95173 0.96366 1.04989 1.70926 1.31503 1.22592 1.33052 0.82978 0.76186 0.75297 0.72016 1.21176 1.19516 1.19370 1.22155 0.99062 0.89892 0.91790 0.90643 1.22392 1.05676 0.99512 0.87914 1.30419 1.14642 1.15706 1.07886 1.08641 0.74404 0.79212 0.79298 1.93569 1.32356 1.87239 1.84294 1.93553 1.67118 1.56492 1.80858 1.30666 1.11872 1.05624 1.23965 0.90780 0.94769 0.90993 0.87412 0.91596 0.95190 0.91243 0.94803 0.94798 0.90894 1.00137 0.99827 0.93740 0.87949 0.85942 0.81875 0.82090 0.84431 0.83946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.63 9.22 71.98 0.66 -2.97 16 2 C 0.04 0.77 5.49 86.30 0.47 1.24 16 3 N -0.52 -11.61 4.00 -866.98 -3.47 -15.08 16 4 C 0.06 1.90 3.98 86.30 0.34 2.25 16 5 C -0.06 -2.51 2.26 -10.80 -0.02 -2.53 16 6 H 0.06 2.22 6.31 -2.39 -0.02 2.20 16 7 C -0.11 -4.25 8.89 71.98 0.64 -3.61 16 8 C 0.02 0.85 3.76 29.85 0.11 0.97 16 9 C -0.60 -34.04 8.41 25.60 0.22 -33.83 16 10 H 0.05 2.84 7.06 -2.91 -0.02 2.82 16 11 C -0.04 -2.45 5.46 84.65 0.46 -1.99 16 12 N -0.94 -59.09 13.65 21.45 0.29 -58.79 16 13 Si 1.11 50.53 29.90 68.60 2.05 52.58 16 14 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 15 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 16 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 17 C 0.08 1.30 1.90 45.60 0.09 1.39 16 18 H 0.08 1.08 6.50 -2.39 -0.02 1.06 16 19 C -0.12 -1.10 4.92 31.59 0.16 -0.94 16 20 C -0.55 -4.10 7.31 72.68 0.53 -3.57 16 21 S 2.40 40.90 6.11 -56.49 -0.34 40.56 16 22 O -0.98 -24.52 18.15 -127.49 -2.31 -26.83 16 23 O -0.98 -24.23 18.14 -127.49 -2.31 -26.55 16 24 C -0.59 -10.47 5.41 72.38 0.39 -10.07 16 25 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.03 0.85 6.54 -2.39 -0.02 0.84 16 27 H 0.07 1.07 6.33 -2.38 -0.02 1.06 16 28 H 0.11 1.41 6.42 -2.39 -0.02 1.40 16 29 H 0.07 1.59 6.32 -2.39 -0.02 1.57 16 30 H 0.03 0.96 6.14 -2.39 -0.01 0.94 16 31 H 0.07 2.15 6.65 -2.39 -0.02 2.14 16 32 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.03 1.37 6.95 -2.38 -0.02 1.36 16 34 H 0.07 2.27 7.75 -2.38 -0.02 2.26 16 35 H -0.02 -1.08 8.01 -2.39 -0.02 -1.10 16 36 H -0.02 -0.92 8.01 -2.39 -0.02 -0.94 16 37 H 0.25 16.09 7.22 -92.70 -0.67 15.42 16 38 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.12 0.66 7.17 -2.39 -0.02 0.65 16 40 H 0.16 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.16 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.14 2.38 8.00 -2.39 -0.02 2.36 16 43 H 0.14 2.81 8.01 -2.38 -0.02 2.79 16 Total: -1.00 -79.06 338.36 -0.96 -80.02 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: 1.08 Total: 7.75 kcal Atomic # 6 Polarization: -57.72 SS G_CDS: 4.05 Total: -53.67 kcal Atomic # 7 Polarization: -70.70 SS G_CDS: -3.17 Total: -73.87 kcal Atomic # 8 Polarization: -48.75 SS G_CDS: -4.63 Total: -53.37 kcal Atomic # 14 Polarization: 50.53 SS G_CDS: 2.05 Total: 52.58 kcal Atomic # 16 Polarization: 40.90 SS G_CDS: -0.34 Total: 40.56 kcal Total: -79.06 -0.96 -80.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602432569.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.907 kcal (2) G-P(sol) polarization free energy of solvation -79.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds