Wall clock time and date at job start Tue Mar 31 2020 05:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46899 * 109.47094 * 2 1 4 4 C 1.46899 * 110.99971 * 295.57758 * 3 2 1 5 5 C 1.53004 * 109.47118 * 288.53325 * 4 3 2 6 6 H 1.09000 * 109.46840 * 56.27431 * 5 4 3 7 7 C 1.52999 * 109.47044 * 296.27109 * 5 4 3 8 8 C 1.53004 * 109.47011 * 176.27368 * 5 4 3 9 9 C 1.50697 * 109.46922 * 185.00155 * 8 5 4 10 10 H 1.07994 * 120.00227 * 0.02562 * 9 8 5 11 11 C 1.37881 * 119.99816 * 179.97438 * 9 8 5 12 12 N 1.31518 * 119.99909 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 119.99796 * 179.97438 * 11 9 8 14 14 H 1.48507 * 109.46955 * 90.00363 * 13 11 9 15 15 H 1.48504 * 109.47073 * 209.99881 * 13 11 9 16 16 H 1.48492 * 109.47540 * 329.99919 * 13 11 9 17 17 C 1.46897 * 110.99949 * 59.53325 * 3 2 1 18 18 H 1.08999 * 110.01436 * 295.34490 * 17 3 2 19 19 C 1.53872 * 110.02785 * 173.96349 * 17 3 2 20 20 C 1.54201 * 108.69011 * 193.57326 * 19 17 3 21 21 S 1.82919 * 105.10799 * 27.83654 * 20 19 17 22 22 O 1.42101 * 109.34884 * 244.51610 * 21 20 19 23 23 O 1.42094 * 109.47479 * 111.34949 * 21 20 19 24 24 C 1.55048 * 110.02805 * 56.72213 * 17 3 2 25 25 H 1.08994 * 109.46867 * 185.30191 * 1 2 3 26 26 H 1.09005 * 109.46429 * 305.30252 * 1 2 3 27 27 H 1.08993 * 109.46993 * 65.29938 * 1 2 3 28 28 H 1.09005 * 109.46763 * 240.00597 * 2 1 3 29 29 H 1.08995 * 109.47410 * 120.00533 * 2 1 3 30 30 H 1.09004 * 109.46499 * 168.53678 * 4 3 2 31 31 H 1.08998 * 109.47466 * 48.53837 * 4 3 2 32 32 H 1.08990 * 109.47513 * 300.00061 * 7 5 4 33 33 H 1.08998 * 109.47191 * 60.00658 * 7 5 4 34 34 H 1.09000 * 109.46842 * 179.97438 * 7 5 4 35 35 H 1.08996 * 109.46887 * 64.99994 * 8 5 4 36 36 H 1.09003 * 109.46966 * 305.00446 * 8 5 4 37 37 H 0.96991 * 119.99683 * 179.97438 * 12 11 9 38 38 H 1.08999 * 109.65007 * 313.37809 * 19 17 3 39 39 H 1.09000 * 109.64801 * 73.67527 * 19 17 3 40 40 H 1.08992 * 110.27411 * 268.94164 * 20 19 17 41 41 H 1.08994 * 110.42391 * 146.80733 * 20 19 17 42 42 H 1.08997 * 110.79057 * 279.99481 * 24 17 3 43 43 H 1.09000 * 110.79170 * 43.26407 * 24 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6370 2.0787 -1.2370 5 6 2.4577 1.5283 -2.4052 6 1 2.3170 0.4495 -2.4716 7 6 3.9389 1.8366 -2.1777 8 6 1.9944 2.1843 -3.7076 9 6 2.7159 1.5547 -4.8713 10 1 3.4327 0.7655 -4.6993 11 6 2.4600 1.9857 -6.1558 12 7 1.5859 2.9458 -6.3654 13 14 3.3547 1.2059 -7.5982 14 1 2.5728 0.0461 -8.0972 15 1 3.5061 2.2056 -8.6858 16 1 4.6964 0.7460 -7.1584 17 6 1.5396 2.1131 1.1820 18 1 0.4540 2.2046 1.1483 19 6 2.1846 3.5089 1.2391 20 6 1.9405 4.1092 2.6383 21 16 1.7943 2.6688 3.7562 22 8 0.4805 2.6229 4.2957 23 8 2.9180 2.6275 4.6250 24 6 1.9701 1.3713 2.4737 25 1 -0.3633 -1.0232 0.0950 26 1 -0.3632 0.5939 0.8388 27 1 -0.3633 0.4294 -0.9336 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.8290 3.1462 -1.1291 31 1 0.5764 1.9180 -1.4305 32 1 4.0796 2.9153 -2.1113 33 1 4.2690 1.3692 -1.2500 34 1 4.5236 1.4441 -3.0097 35 1 2.2167 3.2509 -3.6762 36 1 0.9204 2.0402 -3.8249 37 1 1.4062 3.2492 -7.2689 38 1 3.2563 3.4251 1.0589 39 1 1.7365 4.1510 0.4807 40 1 1.0173 4.6886 2.6449 41 1 2.7816 4.7353 2.9357 42 1 1.3046 0.5326 2.6782 43 1 3.0038 1.0337 2.3998 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602432572.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:38 Heat of formation + Delta-G solvation = -78.951030 kcal Electronic energy + Delta-G solvation = -22129.586776 eV Core-core repulsion = 18915.762672 eV Total energy + Delta-G solvation = -3213.824104 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.28499 -37.24700 -36.26008 -35.56414 -34.00986 -32.15385 -29.96718 -29.53862 -26.82797 -25.50508 -25.22117 -22.99855 -22.35062 -19.99434 -19.05642 -18.65272 -17.23195 -17.07017 -16.29781 -15.91199 -15.49779 -15.06418 -14.76801 -14.51790 -14.24672 -14.17277 -13.32979 -13.17533 -12.86424 -12.48575 -12.42165 -12.37317 -12.25402 -12.17737 -12.11507 -11.72769 -11.52042 -11.39496 -11.14629 -10.94616 -10.89458 -10.83282 -10.60743 -10.52149 -10.30597 -10.28631 -9.63408 -9.18109 -9.01366 -8.36463 -8.18667 -6.01588 -4.02679 -0.19128 2.27139 3.30106 3.34832 3.36911 3.39918 3.67507 3.89620 4.16994 4.40167 4.44771 4.56067 4.61699 4.70361 5.07741 5.14757 5.27152 5.33962 5.34630 5.40468 5.45931 5.51500 5.64838 5.74080 5.83225 5.89736 6.01083 6.13872 6.24418 6.31975 6.49230 6.63245 6.92794 7.03128 7.13926 7.22272 7.29868 7.64545 7.79905 7.98368 8.42379 9.03723 9.61075 11.09922 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.033628 B = 0.003406 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.430451 B = 8219.043938 C = 8425.752466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.045 3.955 3 N -0.515 5.515 4 C 0.048 3.952 5 C -0.078 4.078 6 H 0.056 0.944 7 C -0.124 4.124 8 C 0.027 3.973 9 C -0.512 4.512 10 H 0.056 0.944 11 C 0.056 3.944 12 N -0.897 5.897 13 Si 0.889 3.111 14 H -0.282 1.282 15 H -0.287 1.287 16 H -0.274 1.274 17 C 0.081 3.919 18 H 0.067 0.933 19 C -0.112 4.112 20 C -0.588 4.588 21 S 2.387 3.613 22 O -0.942 6.942 23 O -0.941 6.941 24 C -0.581 4.581 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.039 0.961 32 H 0.038 0.962 33 H 0.043 0.957 34 H 0.053 0.947 35 H 0.015 0.985 36 H 0.011 0.989 37 H 0.259 0.741 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.135 0.865 41 H 0.139 0.861 42 H 0.135 0.865 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.528 -0.884 17.890 17.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.082 4.082 3 N -0.239 5.239 4 C -0.079 4.079 5 C -0.097 4.097 6 H 0.074 0.926 7 C -0.181 4.181 8 C -0.010 4.010 9 C -0.551 4.551 10 H 0.074 0.926 11 C -0.145 4.145 12 N -0.537 5.537 13 Si 0.717 3.283 14 H -0.208 1.208 15 H -0.213 1.213 16 H -0.199 1.199 17 C -0.029 4.029 18 H 0.085 0.915 19 C -0.151 4.151 20 C -0.718 4.718 21 S 2.571 3.429 22 O -0.939 6.939 23 O -0.938 6.938 24 C -0.711 4.711 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.104 0.896 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.034 0.966 36 H 0.030 0.970 37 H 0.069 0.931 38 H 0.116 0.884 39 H 0.113 0.887 40 H 0.153 0.847 41 H 0.157 0.843 42 H 0.153 0.847 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -0.214 -0.839 18.777 18.797 hybrid contribution -0.448 -0.272 -1.868 1.940 sum -0.662 -1.111 16.909 16.958 Atomic orbital electron populations 1.22472 0.98445 1.02314 1.02386 1.22243 0.92808 0.90040 1.03156 1.62355 1.58567 1.01962 1.01014 1.22526 0.98280 0.98306 0.88760 1.21186 0.94733 0.99652 0.94106 0.92566 1.21591 0.96421 1.00077 1.00004 1.19121 0.96112 0.95812 0.89964 1.21219 1.23286 1.19400 0.91175 0.92587 1.25013 0.95344 0.95155 0.98983 1.69959 1.34179 1.28426 1.21110 0.86640 0.80211 0.79016 0.82410 1.20774 1.21306 1.19875 1.22227 0.98279 0.92176 0.90242 0.91531 1.22012 1.04441 0.94534 0.94100 1.30447 1.11776 1.18017 1.11559 1.09054 0.75232 0.80514 0.78145 1.93616 1.37951 1.85635 1.76667 1.93611 1.52460 1.85553 1.62207 1.30782 1.12173 1.15231 1.12933 0.92133 0.92757 0.91660 0.89558 0.90898 0.90942 0.94311 0.94269 0.93823 0.92794 0.96646 0.97018 0.93091 0.88368 0.88650 0.84652 0.84269 0.84702 0.83312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.16 9.27 37.16 0.34 -1.82 16 2 C 0.05 0.52 5.59 -3.82 -0.02 0.50 16 3 N -0.52 -6.23 3.95 -224.81 -0.89 -7.11 16 4 C 0.05 0.72 4.12 -3.82 -0.02 0.71 16 5 C -0.08 -1.46 2.33 -90.62 -0.21 -1.67 16 6 H 0.06 1.08 6.53 -51.93 -0.34 0.74 16 7 C -0.12 -2.21 8.88 37.16 0.33 -1.88 16 8 C 0.03 0.67 4.45 -27.88 -0.12 0.54 16 9 C -0.51 -13.88 8.41 -34.44 -0.29 -14.17 16 10 H 0.06 1.48 7.06 -52.49 -0.37 1.11 16 11 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 12 N -0.90 -26.37 13.29 55.43 0.74 -25.63 16 13 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 15 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 17 C 0.08 0.78 1.77 -66.18 -0.12 0.66 16 18 H 0.07 0.62 6.47 -51.93 -0.34 0.29 16 19 C -0.11 -0.96 5.17 -25.65 -0.13 -1.09 16 20 C -0.59 -3.99 7.26 37.79 0.27 -3.72 16 21 S 2.39 20.84 6.10 -107.50 -0.66 20.18 16 22 O -0.94 -11.40 18.15 -57.73 -1.05 -12.45 16 23 O -0.94 -11.42 18.15 -57.73 -1.05 -12.47 16 24 C -0.58 -4.59 5.57 38.24 0.21 -4.38 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.54 6.23 -51.93 -0.32 0.22 16 27 H 0.06 0.82 6.54 -51.93 -0.34 0.48 16 28 H 0.09 1.11 6.46 -51.93 -0.34 0.78 16 29 H 0.07 0.70 6.80 -51.93 -0.35 0.35 16 30 H 0.07 1.05 6.08 -51.93 -0.32 0.74 16 31 H 0.04 0.60 6.06 -51.93 -0.31 0.29 16 32 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.04 0.68 7.71 -51.93 -0.40 0.28 16 34 H 0.05 1.06 6.95 -51.93 -0.36 0.70 16 35 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 38 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.10 0.84 6.93 -51.93 -0.36 0.48 16 40 H 0.14 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.14 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.13 0.91 7.69 -51.93 -0.40 0.51 16 43 H 0.15 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 339.74 15.07 5.12 5.12 Total: -1.00 -34.04 339.74 -9.72 -43.76 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -7.07 Total: -2.81 kcal Atomic # 6 Polarization: -25.00 SS G_CDS: 0.15 Total: -24.84 kcal Atomic # 7 Polarization: -32.59 SS G_CDS: -0.15 Total: -32.75 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -2.10 Total: -24.91 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 20.84 SS G_CDS: -0.66 Total: 20.18 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.04 -9.72 -43.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602432572.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.190 kcal (2) G-P(sol) polarization free energy of solvation -34.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds