Wall clock time and date at job start Tue Mar 31 2020 05:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46899 * 109.47094 * 2 1 4 4 C 1.46899 * 110.99971 * 295.57758 * 3 2 1 5 5 C 1.53004 * 109.47118 * 288.53325 * 4 3 2 6 6 H 1.09000 * 109.46840 * 56.27431 * 5 4 3 7 7 C 1.52999 * 109.47044 * 296.27109 * 5 4 3 8 8 C 1.53004 * 109.47011 * 176.27368 * 5 4 3 9 9 C 1.50697 * 109.46922 * 185.00155 * 8 5 4 10 10 H 1.07994 * 120.00227 * 0.02562 * 9 8 5 11 11 C 1.37881 * 119.99816 * 179.97438 * 9 8 5 12 12 N 1.31518 * 119.99909 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 119.99796 * 179.97438 * 11 9 8 14 14 H 1.48507 * 109.46955 * 90.00363 * 13 11 9 15 15 H 1.48504 * 109.47073 * 209.99881 * 13 11 9 16 16 H 1.48492 * 109.47540 * 329.99919 * 13 11 9 17 17 C 1.46897 * 110.99949 * 59.53325 * 3 2 1 18 18 H 1.08999 * 110.01436 * 295.34490 * 17 3 2 19 19 C 1.53872 * 110.02785 * 173.96349 * 17 3 2 20 20 C 1.54201 * 108.69011 * 193.57326 * 19 17 3 21 21 S 1.82919 * 105.10799 * 27.83654 * 20 19 17 22 22 O 1.42101 * 109.34884 * 244.51610 * 21 20 19 23 23 O 1.42094 * 109.47479 * 111.34949 * 21 20 19 24 24 C 1.55048 * 110.02805 * 56.72213 * 17 3 2 25 25 H 1.08994 * 109.46867 * 185.30191 * 1 2 3 26 26 H 1.09005 * 109.46429 * 305.30252 * 1 2 3 27 27 H 1.08993 * 109.46993 * 65.29938 * 1 2 3 28 28 H 1.09005 * 109.46763 * 240.00597 * 2 1 3 29 29 H 1.08995 * 109.47410 * 120.00533 * 2 1 3 30 30 H 1.09004 * 109.46499 * 168.53678 * 4 3 2 31 31 H 1.08998 * 109.47466 * 48.53837 * 4 3 2 32 32 H 1.08990 * 109.47513 * 300.00061 * 7 5 4 33 33 H 1.08998 * 109.47191 * 60.00658 * 7 5 4 34 34 H 1.09000 * 109.46842 * 179.97438 * 7 5 4 35 35 H 1.08996 * 109.46887 * 64.99994 * 8 5 4 36 36 H 1.09003 * 109.46966 * 305.00446 * 8 5 4 37 37 H 0.96991 * 119.99683 * 179.97438 * 12 11 9 38 38 H 1.08999 * 109.65007 * 313.37809 * 19 17 3 39 39 H 1.09000 * 109.64801 * 73.67527 * 19 17 3 40 40 H 1.08992 * 110.27411 * 268.94164 * 20 19 17 41 41 H 1.08994 * 110.42391 * 146.80733 * 20 19 17 42 42 H 1.08997 * 110.79057 * 279.99481 * 24 17 3 43 43 H 1.09000 * 110.79170 * 43.26407 * 24 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6370 2.0787 -1.2370 5 6 2.4577 1.5283 -2.4052 6 1 2.3170 0.4495 -2.4716 7 6 3.9389 1.8366 -2.1777 8 6 1.9944 2.1843 -3.7076 9 6 2.7159 1.5547 -4.8713 10 1 3.4327 0.7655 -4.6993 11 6 2.4600 1.9857 -6.1558 12 7 1.5859 2.9458 -6.3654 13 14 3.3547 1.2059 -7.5982 14 1 2.5728 0.0461 -8.0972 15 1 3.5061 2.2056 -8.6858 16 1 4.6964 0.7460 -7.1584 17 6 1.5396 2.1131 1.1820 18 1 0.4540 2.2046 1.1483 19 6 2.1846 3.5089 1.2391 20 6 1.9405 4.1092 2.6383 21 16 1.7943 2.6688 3.7562 22 8 0.4805 2.6229 4.2957 23 8 2.9180 2.6275 4.6250 24 6 1.9701 1.3713 2.4737 25 1 -0.3633 -1.0232 0.0950 26 1 -0.3632 0.5939 0.8388 27 1 -0.3633 0.4294 -0.9336 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.8290 3.1462 -1.1291 31 1 0.5764 1.9180 -1.4305 32 1 4.0796 2.9153 -2.1113 33 1 4.2690 1.3692 -1.2500 34 1 4.5236 1.4441 -3.0097 35 1 2.2167 3.2509 -3.6762 36 1 0.9204 2.0402 -3.8249 37 1 1.4062 3.2492 -7.2689 38 1 3.2563 3.4251 1.0589 39 1 1.7365 4.1510 0.4807 40 1 1.0173 4.6886 2.6449 41 1 2.7816 4.7353 2.9357 42 1 1.3046 0.5326 2.6782 43 1 3.0038 1.0337 2.3998 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602432572.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:38 Heat of formation + Delta-G solvation = -103.347614 kcal Electronic energy + Delta-G solvation = -22130.644692 eV Core-core repulsion = 18915.762672 eV Total energy + Delta-G solvation = -3214.882020 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.24639 -38.06473 -37.11557 -36.86862 -35.19424 -33.98373 -30.75481 -30.56772 -28.65108 -26.81834 -25.97324 -24.69304 -23.25047 -21.12608 -19.97006 -19.76543 -18.51985 -17.90145 -17.78860 -16.71655 -16.57557 -16.39368 -15.92182 -15.56465 -15.46762 -14.95103 -14.68598 -14.32100 -14.06476 -13.86469 -13.39292 -13.24802 -13.22438 -13.14504 -13.06338 -12.96758 -12.84223 -12.74735 -12.53725 -12.28929 -12.20126 -12.00127 -11.89338 -11.80170 -11.54440 -11.30918 -11.16203 -10.94455 -10.82693 -10.50490 -9.18646 -8.15956 -6.24060 -0.87574 1.40972 1.41389 1.52256 1.61090 2.42944 2.66706 2.86586 3.14446 3.18046 3.45137 3.72569 3.83333 3.97578 4.05721 4.12438 4.31270 4.35115 4.40852 4.55558 4.60572 4.65229 4.75241 4.80606 4.85835 4.93280 5.00055 5.05260 5.11198 5.16800 5.21567 5.33912 5.39287 5.54337 5.57811 5.61409 5.85793 5.93546 6.11363 6.20362 6.35306 6.92591 7.44200 8.95873 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.033628 B = 0.003406 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.430451 B = 8219.043938 C = 8425.752466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.042 3.958 3 N -0.514 5.514 4 C 0.059 3.941 5 C -0.069 4.069 6 H 0.050 0.950 7 C -0.114 4.114 8 C 0.033 3.967 9 C -0.526 4.526 10 H 0.059 0.941 11 C -0.001 4.001 12 N -0.935 5.935 13 Si 0.956 3.044 14 H -0.275 1.275 15 H -0.285 1.285 16 H -0.264 1.264 17 C 0.073 3.927 18 H 0.072 0.928 19 C -0.116 4.116 20 C -0.568 4.568 21 S 2.401 3.599 22 O -0.978 6.978 23 O -0.977 6.977 24 C -0.570 4.570 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.041 0.959 28 H 0.068 0.932 29 H 0.098 0.902 30 H 0.078 0.922 31 H 0.030 0.970 32 H 0.038 0.962 33 H 0.070 0.930 34 H 0.031 0.969 35 H -0.008 1.008 36 H -0.016 1.016 37 H 0.261 0.739 38 H 0.101 0.899 39 H 0.094 0.906 40 H 0.151 0.849 41 H 0.158 0.842 42 H 0.150 0.850 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.328 -1.401 18.785 18.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.086 4.086 3 N -0.238 5.238 4 C -0.068 4.068 5 C -0.088 4.088 6 H 0.069 0.931 7 C -0.171 4.171 8 C -0.005 4.005 9 C -0.564 4.564 10 H 0.077 0.923 11 C -0.198 4.198 12 N -0.576 5.576 13 Si 0.781 3.219 14 H -0.201 1.201 15 H -0.210 1.210 16 H -0.188 1.188 17 C -0.037 4.037 18 H 0.090 0.910 19 C -0.155 4.155 20 C -0.700 4.700 21 S 2.588 3.412 22 O -0.975 6.975 23 O -0.974 6.974 24 C -0.701 4.701 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.060 0.940 28 H 0.087 0.913 29 H 0.116 0.884 30 H 0.096 0.904 31 H 0.048 0.952 32 H 0.058 0.942 33 H 0.089 0.911 34 H 0.050 0.950 35 H 0.010 0.990 36 H 0.002 0.998 37 H 0.070 0.930 38 H 0.120 0.880 39 H 0.112 0.888 40 H 0.169 0.831 41 H 0.176 0.824 42 H 0.168 0.832 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 0.645 -1.378 19.714 19.773 hybrid contribution -0.736 -0.103 -2.161 2.285 sum -0.091 -1.481 17.553 17.616 Atomic orbital electron populations 1.22441 0.98147 1.03121 1.01643 1.22315 0.93103 0.89650 1.03510 1.62262 1.58779 1.02240 1.00490 1.22222 0.96950 0.98681 0.88993 1.20969 0.95998 0.98811 0.93001 0.93122 1.21490 0.95113 1.00177 1.00340 1.19012 0.94203 0.94689 0.92565 1.21645 1.23195 1.19299 0.92286 0.92308 1.25892 0.96178 0.95695 1.02019 1.70088 1.35775 1.29958 1.21762 0.85580 0.79331 0.78137 0.78817 1.20093 1.21041 1.18794 1.22370 0.98856 0.92821 0.89639 0.90981 1.22051 1.04567 0.93952 0.94946 1.30324 1.13536 1.16927 1.09247 1.08477 0.73559 0.81011 0.78126 1.93568 1.39451 1.86419 1.78085 1.93563 1.53339 1.86348 1.64193 1.30711 1.13306 1.15170 1.10945 0.90968 0.91540 0.93955 0.91327 0.88389 0.90356 0.95180 0.94244 0.91137 0.95026 0.98990 0.99813 0.93039 0.88046 0.88769 0.83061 0.82365 0.83225 0.82153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.97 9.27 71.98 0.67 -3.30 16 2 C 0.04 0.88 5.59 86.31 0.48 1.36 16 3 N -0.51 -11.38 3.95 -865.16 -3.42 -14.80 16 4 C 0.06 1.73 4.12 86.30 0.36 2.09 16 5 C -0.07 -2.58 2.33 -10.79 -0.03 -2.61 16 6 H 0.05 1.95 6.53 -2.39 -0.02 1.94 16 7 C -0.11 -3.96 8.88 71.98 0.64 -3.32 16 8 C 0.03 1.65 4.45 29.85 0.13 1.78 16 9 C -0.53 -28.94 8.41 25.60 0.22 -28.72 16 10 H 0.06 3.13 7.06 -2.91 -0.02 3.11 16 11 C 0.00 -0.04 5.46 84.66 0.46 0.43 16 12 N -0.93 -56.08 13.29 21.45 0.28 -55.80 16 13 Si 0.96 43.77 29.54 68.60 2.03 45.80 16 14 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 15 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 16 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 17 C 0.07 1.22 1.77 45.91 0.08 1.30 16 18 H 0.07 1.17 6.47 -2.39 -0.02 1.15 16 19 C -0.12 -1.68 5.17 31.30 0.16 -1.52 16 20 C -0.57 -6.12 7.26 72.39 0.53 -5.59 16 21 S 2.40 37.45 6.10 -56.49 -0.34 37.10 16 22 O -0.98 -22.42 18.15 -127.47 -2.31 -24.74 16 23 O -0.98 -22.37 18.15 -127.47 -2.31 -24.69 16 24 C -0.57 -7.39 5.57 72.68 0.40 -6.99 16 25 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.07 1.18 6.23 -2.38 -0.01 1.16 16 27 H 0.04 1.05 6.54 -2.39 -0.02 1.04 16 28 H 0.07 1.69 6.46 -2.38 -0.02 1.68 16 29 H 0.10 1.58 6.80 -2.39 -0.02 1.56 16 30 H 0.08 2.20 6.08 -2.38 -0.01 2.19 16 31 H 0.03 0.94 6.06 -2.39 -0.01 0.92 16 32 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.07 2.06 7.71 -2.39 -0.02 2.04 16 34 H 0.03 1.21 6.95 -2.39 -0.02 1.20 16 35 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 36 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 37 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 38 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.09 1.44 6.93 -2.39 -0.02 1.42 16 40 H 0.15 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.16 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.15 1.54 7.69 -2.39 -0.02 1.52 16 43 H 0.16 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -73.99 339.74 -0.99 -74.98 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: 0.98 Total: 7.24 kcal Atomic # 6 Polarization: -49.20 SS G_CDS: 4.10 Total: -45.10 kcal Atomic # 7 Polarization: -67.46 SS G_CDS: -3.13 Total: -70.59 kcal Atomic # 8 Polarization: -44.80 SS G_CDS: -4.63 Total: -49.42 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: 37.45 SS G_CDS: -0.34 Total: 37.10 kcal Total: -73.99 -0.99 -74.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602432572.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.368 kcal (2) G-P(sol) polarization free energy of solvation -73.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds