Wall clock time and date at job start Tue Mar 31 2020 06:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 S 1.81399 * 109.47173 * 2 1 4 4 O 1.42103 * 108.57712 * 65.51467 * 3 2 1 5 5 O 1.42105 * 108.58122 * 294.49186 * 3 2 1 6 6 C 1.81400 * 101.92058 * 180.02562 * 3 2 1 7 7 C 1.53005 * 109.46836 * 177.67795 * 6 3 2 8 8 H 1.08995 * 109.47191 * 50.01945 * 7 6 3 9 9 C 1.53003 * 109.46915 * 170.01630 * 7 6 3 10 10 N 1.46901 * 109.47361 * 290.01515 * 7 6 3 11 11 C 1.46898 * 111.00086 * 289.80037 * 10 7 6 12 12 C 1.46898 * 110.99918 * 165.84280 * 10 7 6 13 13 C 1.53000 * 109.46667 * 195.85143 * 12 10 7 14 14 C 1.50697 * 115.55320 * 283.32362 * 13 12 10 15 15 H 1.08005 * 119.99906 * 117.69545 * 14 13 12 16 16 C 1.37877 * 120.00021 * 297.69647 * 14 13 12 17 17 N 1.31511 * 120.00210 * 344.59208 * 16 14 13 18 18 Si 1.86803 * 120.00003 * 164.58839 * 16 14 13 19 19 H 1.48500 * 109.47045 * 89.99913 * 18 16 14 20 20 H 1.48496 * 109.47270 * 210.00384 * 18 16 14 21 21 H 1.48503 * 109.47322 * 330.00470 * 18 16 14 22 22 C 1.53001 * 117.49671 * 137.62020 * 13 12 10 23 23 C 1.53003 * 60.00126 * 252.50968 * 22 13 12 24 24 H 1.08995 * 109.47219 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47068 * 299.99613 * 1 2 3 26 26 H 1.09002 * 109.46996 * 59.99351 * 1 2 3 27 27 H 1.09004 * 109.47068 * 240.00387 * 2 1 3 28 28 H 1.08993 * 109.47271 * 120.00592 * 2 1 3 29 29 H 1.09003 * 109.47402 * 297.67560 * 6 3 2 30 30 H 1.08997 * 109.47349 * 57.68399 * 6 3 2 31 31 H 1.09003 * 109.47009 * 179.97438 * 9 7 6 32 32 H 1.08993 * 109.47209 * 299.99986 * 9 7 6 33 33 H 1.09004 * 109.46897 * 59.99992 * 9 7 6 34 34 H 1.09004 * 109.47323 * 49.65961 * 11 10 7 35 35 H 1.08998 * 109.47051 * 169.66309 * 11 10 7 36 36 H 1.09000 * 109.47027 * 289.66192 * 11 10 7 37 37 H 1.08993 * 109.47435 * 315.85497 * 12 10 7 38 38 H 1.08999 * 109.46914 * 75.85643 * 12 10 7 39 39 H 0.96996 * 119.99984 * 185.02435 * 17 16 14 40 40 H 1.09007 * 117.50060 * 359.97438 * 22 13 12 41 41 H 1.08997 * 117.50655 * 145.02042 * 22 13 12 42 42 H 1.09000 * 117.49319 * 252.51173 * 23 22 13 43 43 H 1.09001 * 117.52036 * 107.47907 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.7592 2.3232 1.2259 5 8 1.7591 2.3233 -1.2258 6 6 3.9329 1.4719 -0.0008 7 6 4.6279 2.8337 -0.0593 8 1 4.2092 3.4884 0.7049 9 6 6.1266 2.6526 0.1896 10 7 4.4205 3.4328 -1.3845 11 6 5.1768 2.7077 -2.4142 12 6 4.7730 4.8588 -1.3786 13 6 4.1874 5.5340 -2.6204 14 6 4.9246 5.2760 -3.9092 15 1 4.4287 4.7668 -4.7224 16 6 6.2322 5.6899 -4.0502 17 7 6.7410 6.5606 -3.2062 18 14 7.2811 5.0138 -5.4403 19 1 7.1381 5.8827 -6.6360 20 1 8.7043 4.9842 -5.0172 21 1 6.8349 3.6370 -5.7727 22 6 3.5417 6.9091 -2.4386 23 6 2.6662 5.6805 -2.6938 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 4.2308 0.9508 0.9091 30 1 4.2206 0.8796 -0.8695 31 1 6.6217 3.6228 0.1474 32 1 6.2805 2.2082 1.1728 33 1 6.5453 1.9979 -0.5747 34 1 4.9825 1.6391 -2.3228 35 1 4.8667 3.0503 -3.4014 36 1 6.2423 2.8959 -2.2824 37 1 4.3671 5.3298 -0.4834 38 1 5.8578 4.9649 -1.3848 39 1 7.6360 6.9070 -3.3473 40 1 3.5336 7.3326 -1.4342 41 1 3.6500 7.6275 -3.2511 42 1 2.1987 5.5907 -3.6744 43 1 2.0826 5.2955 -1.8576 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602782935.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:57 Heat of formation + Delta-G solvation = -37.666804 kcal Electronic energy + Delta-G solvation = -22908.480635 eV Core-core repulsion = 19696.446749 eV Total energy + Delta-G solvation = -3212.033886 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -38.27212 -36.63228 -35.80380 -35.60461 -33.22098 -31.95586 -31.22833 -27.68702 -26.57970 -25.69913 -24.32901 -23.29590 -20.81891 -19.58447 -18.72953 -18.55053 -16.82155 -16.32989 -16.01184 -15.59911 -15.33922 -14.64732 -14.29813 -14.08331 -13.92340 -13.40997 -13.14910 -12.93057 -12.59204 -12.57002 -12.49581 -12.15952 -11.69665 -11.67387 -11.63008 -11.58552 -11.36342 -11.06796 -10.90553 -10.72696 -10.62076 -10.54950 -10.45638 -10.32086 -10.07149 -9.95309 -9.18668 -8.83700 -8.32223 -7.94208 -7.38845 -5.99552 -3.95947 0.17578 3.00990 3.27988 3.36285 3.39849 3.83004 4.11765 4.41506 4.43672 4.55548 4.68864 4.83624 5.05733 5.10328 5.23155 5.35043 5.47867 5.51057 5.58340 5.59501 5.73692 5.77686 5.90058 6.05567 6.09242 6.32853 6.37080 6.45825 6.61919 6.72899 6.95314 7.02534 7.11174 7.17166 7.30837 7.55250 7.68724 7.89418 8.00286 8.06213 8.59599 8.99740 9.60985 11.07834 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.022180 B = 0.005325 C = 0.005065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.122943 B = 5256.528860 C = 5527.134740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.630 4.630 3 S 2.422 3.578 4 O -0.949 6.949 5 O -0.894 6.894 6 C -0.602 4.602 7 C 0.087 3.913 8 H 0.086 0.914 9 C -0.175 4.175 10 N -0.522 5.522 11 C 0.029 3.971 12 C 0.101 3.899 13 C 0.055 3.945 14 C -0.483 4.483 15 H 0.060 0.940 16 C 0.072 3.928 17 N -0.876 5.876 18 Si 0.875 3.125 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.271 1.271 22 C -0.182 4.182 23 C -0.186 4.186 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.128 0.872 28 H 0.123 0.877 29 H 0.124 0.876 30 H 0.133 0.867 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.037 0.963 35 H 0.101 0.899 36 H 0.023 0.977 37 H 0.040 0.960 38 H 0.053 0.947 39 H 0.258 0.742 40 H 0.058 0.942 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.320 -13.917 7.999 16.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.757 4.757 3 S 2.601 3.399 4 O -0.946 6.946 5 O -0.891 6.891 6 C -0.731 4.731 7 C -0.024 4.024 8 H 0.104 0.896 9 C -0.235 4.235 10 N -0.245 5.245 11 C -0.119 4.119 12 C -0.026 4.026 13 C 0.054 3.946 14 C -0.521 4.521 15 H 0.078 0.922 16 C -0.131 4.131 17 N -0.513 5.513 18 Si 0.703 3.297 19 H -0.208 1.208 20 H -0.214 1.214 21 H -0.196 1.196 22 C -0.221 4.221 23 C -0.224 4.224 24 H 0.094 0.906 25 H 0.089 0.911 26 H 0.093 0.907 27 H 0.147 0.853 28 H 0.142 0.858 29 H 0.143 0.857 30 H 0.151 0.849 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.056 0.944 35 H 0.119 0.881 36 H 0.041 0.959 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.094 0.906 42 H 0.089 0.911 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.120 -13.140 7.964 16.539 hybrid contribution 2.170 -1.113 -0.481 2.485 sum -3.950 -14.253 7.482 16.575 Atomic orbital electron populations 1.21473 0.90731 1.04306 1.03765 1.30406 1.07407 1.27144 1.10746 1.08207 0.78346 0.77387 0.75938 1.93550 1.81515 1.72897 1.46628 1.93669 1.80252 1.71049 1.44113 1.30415 1.25257 1.06938 1.10510 1.21371 0.94795 0.91388 0.94829 0.89569 1.22394 0.96791 1.02885 1.01392 1.62302 1.56806 1.04226 1.01202 1.22544 0.95424 0.95453 0.98437 1.21660 0.99500 0.84474 0.96928 1.18669 0.89048 0.93134 0.93711 1.20415 0.95822 1.37524 0.98329 0.92178 1.24936 0.97800 0.94733 0.95592 1.70020 1.16601 1.27853 1.36787 0.86856 0.79942 0.80108 0.82805 1.20770 1.21365 1.19600 1.22766 1.07468 0.92719 0.99131 1.22705 0.95901 1.03457 1.00297 0.90645 0.91084 0.90656 0.85340 0.85848 0.85734 0.84884 0.91556 0.92812 0.91872 0.94392 0.88067 0.95875 0.94138 0.92843 0.93179 0.92371 0.90576 0.91147 0.90921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.92 37.16 0.37 -0.93 16 2 C -0.63 -5.45 6.52 37.16 0.24 -5.20 16 3 S 2.42 31.96 4.68 -107.50 -0.50 31.45 16 4 O -0.95 -15.34 18.10 -57.83 -1.05 -16.38 16 5 O -0.89 -15.73 17.33 -57.83 -1.00 -16.73 16 6 C -0.60 -7.02 5.31 37.16 0.20 -6.83 16 7 C 0.09 1.37 2.25 -67.71 -0.15 1.22 16 8 H 0.09 1.38 7.75 -51.93 -0.40 0.98 16 9 C -0.17 -2.51 8.38 37.16 0.31 -2.20 16 10 N -0.52 -10.23 3.81 -234.89 -0.89 -11.12 16 11 C 0.03 0.56 7.81 60.06 0.47 1.03 16 12 C 0.10 2.31 4.44 -3.83 -0.02 2.29 16 13 C 0.06 1.38 1.36 -155.66 -0.21 1.17 16 14 C -0.48 -12.85 6.19 -34.44 -0.21 -13.06 16 15 H 0.06 1.63 7.80 -52.48 -0.41 1.22 16 16 C 0.07 1.92 5.15 -17.82 -0.09 1.83 16 17 N -0.88 -24.30 12.70 55.43 0.70 -23.60 16 18 Si 0.88 20.53 29.57 -169.99 -5.03 15.50 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 22 C -0.18 -4.46 9.88 -26.73 -0.26 -4.72 16 23 C -0.19 -4.43 9.95 -26.73 -0.27 -4.70 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.13 0.87 8.14 -51.92 -0.42 0.45 16 28 H 0.12 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.12 1.00 8.11 -51.92 -0.42 0.58 16 30 H 0.13 1.35 6.23 -51.93 -0.32 1.03 16 31 H 0.07 1.07 7.23 -51.93 -0.38 0.70 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.88 6.54 -51.93 -0.34 0.55 16 34 H 0.04 0.59 6.17 -51.93 -0.32 0.27 16 35 H 0.10 2.23 5.82 -51.93 -0.30 1.93 16 36 H 0.02 0.45 6.72 -51.93 -0.35 0.10 16 37 H 0.04 0.89 7.60 -51.93 -0.39 0.50 16 38 H 0.05 1.32 6.42 -51.93 -0.33 0.98 16 39 H 0.26 6.90 8.32 -40.82 -0.34 6.57 16 40 H 0.06 1.35 8.11 -51.92 -0.42 0.93 16 41 H 0.08 1.93 8.14 -51.93 -0.42 1.51 16 42 H 0.07 1.66 8.14 -51.93 -0.42 1.24 16 43 H 0.07 1.69 8.14 -51.93 -0.42 1.27 16 LS Contribution 350.75 15.07 5.29 5.29 Total: -1.00 -32.78 350.75 -9.44 -42.22 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -7.33 Total: 3.49 kcal Atomic # 6 Polarization: -30.48 SS G_CDS: 0.37 Total: -30.11 kcal Atomic # 7 Polarization: -34.53 SS G_CDS: -0.19 Total: -34.72 kcal Atomic # 8 Polarization: -31.07 SS G_CDS: -2.05 Total: -33.12 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.03 Total: 15.50 kcal Atomic # 16 Polarization: 31.96 SS G_CDS: -0.50 Total: 31.45 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.78 -9.44 -42.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602782935.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.556 kcal (2) G-P(sol) polarization free energy of solvation -32.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds