Wall clock time and date at job start Tue Mar 31 2020 06:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 S 1.81399 * 109.47173 * 2 1 4 4 O 1.42103 * 108.57712 * 65.51467 * 3 2 1 5 5 O 1.42105 * 108.58122 * 294.49186 * 3 2 1 6 6 C 1.81400 * 101.92058 * 180.02562 * 3 2 1 7 7 C 1.53005 * 109.46836 * 177.67795 * 6 3 2 8 8 H 1.08995 * 109.47191 * 50.01945 * 7 6 3 9 9 C 1.53003 * 109.46915 * 170.01630 * 7 6 3 10 10 N 1.46901 * 109.47361 * 290.01515 * 7 6 3 11 11 C 1.46898 * 111.00086 * 289.80037 * 10 7 6 12 12 C 1.46898 * 110.99918 * 165.84280 * 10 7 6 13 13 C 1.53000 * 109.46667 * 195.85143 * 12 10 7 14 14 C 1.50697 * 115.55320 * 283.32362 * 13 12 10 15 15 H 1.08005 * 119.99906 * 117.69545 * 14 13 12 16 16 C 1.37877 * 120.00021 * 297.69647 * 14 13 12 17 17 N 1.31511 * 120.00210 * 344.59208 * 16 14 13 18 18 Si 1.86803 * 120.00003 * 164.58839 * 16 14 13 19 19 H 1.48500 * 109.47045 * 89.99913 * 18 16 14 20 20 H 1.48496 * 109.47270 * 210.00384 * 18 16 14 21 21 H 1.48503 * 109.47322 * 330.00470 * 18 16 14 22 22 C 1.53001 * 117.49671 * 137.62020 * 13 12 10 23 23 C 1.53003 * 60.00126 * 252.50968 * 22 13 12 24 24 H 1.08995 * 109.47219 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47068 * 299.99613 * 1 2 3 26 26 H 1.09002 * 109.46996 * 59.99351 * 1 2 3 27 27 H 1.09004 * 109.47068 * 240.00387 * 2 1 3 28 28 H 1.08993 * 109.47271 * 120.00592 * 2 1 3 29 29 H 1.09003 * 109.47402 * 297.67560 * 6 3 2 30 30 H 1.08997 * 109.47349 * 57.68399 * 6 3 2 31 31 H 1.09003 * 109.47009 * 179.97438 * 9 7 6 32 32 H 1.08993 * 109.47209 * 299.99986 * 9 7 6 33 33 H 1.09004 * 109.46897 * 59.99992 * 9 7 6 34 34 H 1.09004 * 109.47323 * 49.65961 * 11 10 7 35 35 H 1.08998 * 109.47051 * 169.66309 * 11 10 7 36 36 H 1.09000 * 109.47027 * 289.66192 * 11 10 7 37 37 H 1.08993 * 109.47435 * 315.85497 * 12 10 7 38 38 H 1.08999 * 109.46914 * 75.85643 * 12 10 7 39 39 H 0.96996 * 119.99984 * 185.02435 * 17 16 14 40 40 H 1.09007 * 117.50060 * 359.97438 * 22 13 12 41 41 H 1.08997 * 117.50655 * 145.02042 * 22 13 12 42 42 H 1.09000 * 117.49319 * 252.51173 * 23 22 13 43 43 H 1.09001 * 117.52036 * 107.47907 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.7592 2.3232 1.2259 5 8 1.7591 2.3233 -1.2258 6 6 3.9329 1.4719 -0.0008 7 6 4.6279 2.8337 -0.0593 8 1 4.2092 3.4884 0.7049 9 6 6.1266 2.6526 0.1896 10 7 4.4205 3.4328 -1.3845 11 6 5.1768 2.7077 -2.4142 12 6 4.7730 4.8588 -1.3786 13 6 4.1874 5.5340 -2.6204 14 6 4.9246 5.2760 -3.9092 15 1 4.4287 4.7668 -4.7224 16 6 6.2322 5.6899 -4.0502 17 7 6.7410 6.5606 -3.2062 18 14 7.2811 5.0138 -5.4403 19 1 7.1381 5.8827 -6.6360 20 1 8.7043 4.9842 -5.0172 21 1 6.8349 3.6370 -5.7727 22 6 3.5417 6.9091 -2.4386 23 6 2.6662 5.6805 -2.6938 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 4.2308 0.9508 0.9091 30 1 4.2206 0.8796 -0.8695 31 1 6.6217 3.6228 0.1474 32 1 6.2805 2.2082 1.1728 33 1 6.5453 1.9979 -0.5747 34 1 4.9825 1.6391 -2.3228 35 1 4.8667 3.0503 -3.4014 36 1 6.2423 2.8959 -2.2824 37 1 4.3671 5.3298 -0.4834 38 1 5.8578 4.9649 -1.3848 39 1 7.6360 6.9070 -3.3473 40 1 3.5336 7.3326 -1.4342 41 1 3.6500 7.6275 -3.2511 42 1 2.1987 5.5907 -3.6744 43 1 2.0826 5.2955 -1.8576 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602782935.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:56 Heat of formation + Delta-G solvation = -60.918345 kcal Electronic energy + Delta-G solvation = -22909.488898 eV Core-core repulsion = 19696.446749 eV Total energy + Delta-G solvation = -3213.042148 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.81551 -37.73168 -37.55322 -36.72371 -34.02804 -33.91277 -32.58681 -28.78264 -28.19027 -27.71755 -25.47258 -24.48682 -22.80470 -21.05748 -20.52983 -19.56219 -18.12267 -17.72682 -17.27110 -16.74345 -16.67192 -16.43369 -15.85750 -15.42986 -15.11107 -14.83929 -14.35386 -14.26470 -14.04796 -13.68473 -13.56112 -13.31917 -13.19657 -12.99631 -12.87761 -12.80141 -12.73217 -12.71805 -12.31298 -12.28742 -12.23768 -12.11374 -11.98239 -11.86578 -11.50814 -11.12929 -10.97064 -10.85233 -10.33696 -9.90591 -8.95829 -8.05500 -6.06850 -0.76950 1.40195 1.43974 1.53131 2.09809 2.45462 2.88158 3.01866 3.17184 3.34327 3.68679 3.79414 3.86584 3.94826 4.07131 4.26538 4.31521 4.45164 4.47206 4.54850 4.62625 4.73934 4.76539 4.80375 4.86981 4.88552 4.90746 4.93548 5.07238 5.11370 5.15315 5.18360 5.25985 5.33347 5.53424 5.65185 5.68821 5.88576 6.33788 6.46875 6.53766 6.91850 7.52056 9.01776 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.022180 B = 0.005325 C = 0.005065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.122943 B = 5256.528860 C = 5527.134740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.599 4.599 3 S 2.402 3.598 4 O -0.993 6.993 5 O -0.954 6.954 6 C -0.591 4.591 7 C 0.074 3.926 8 H 0.075 0.925 9 C -0.170 4.170 10 N -0.529 5.529 11 C 0.032 3.968 12 C 0.114 3.886 13 C 0.039 3.961 14 C -0.490 4.490 15 H 0.049 0.951 16 C 0.035 3.965 17 N -0.904 5.904 18 Si 0.933 3.067 19 H -0.282 1.282 20 H -0.285 1.285 21 H -0.261 1.261 22 C -0.187 4.187 23 C -0.172 4.172 24 H 0.104 0.896 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.157 0.843 28 H 0.161 0.839 29 H 0.172 0.828 30 H 0.156 0.844 31 H 0.037 0.963 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.013 0.987 37 H 0.036 0.964 38 H 0.029 0.971 39 H 0.258 0.742 40 H 0.066 0.934 41 H 0.061 0.939 42 H 0.068 0.932 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.923 -17.468 8.650 20.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.730 4.730 3 S 2.589 3.411 4 O -0.990 6.990 5 O -0.952 6.952 6 C -0.722 4.722 7 C -0.035 4.035 8 H 0.093 0.907 9 C -0.229 4.229 10 N -0.252 5.252 11 C -0.116 4.116 12 C -0.013 4.013 13 C 0.038 3.962 14 C -0.527 4.527 15 H 0.067 0.933 16 C -0.166 4.166 17 N -0.542 5.542 18 Si 0.759 3.241 19 H -0.209 1.209 20 H -0.211 1.211 21 H -0.185 1.185 22 C -0.226 4.226 23 C -0.210 4.210 24 H 0.123 0.877 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.175 0.825 28 H 0.179 0.821 29 H 0.189 0.811 30 H 0.174 0.826 31 H 0.056 0.944 32 H 0.105 0.895 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.032 0.968 37 H 0.055 0.945 38 H 0.047 0.953 39 H 0.067 0.933 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.733 -16.651 8.614 19.604 hybrid contribution 1.976 -0.090 -0.633 2.077 sum -3.756 -16.741 7.981 18.923 Atomic orbital electron populations 1.21666 0.91121 1.05951 1.03181 1.30111 1.06926 1.21886 1.14110 1.08293 0.79089 0.79626 0.74074 1.93494 1.82392 1.75646 1.47469 1.93607 1.81454 1.74355 1.45740 1.30304 1.23011 1.04838 1.14000 1.21516 0.96397 0.93377 0.92241 0.90671 1.22338 0.95212 1.01795 1.03568 1.62199 1.56945 1.02529 1.03560 1.22454 0.94606 0.97700 0.96800 1.21348 0.97559 0.86923 0.95519 1.18887 0.89552 0.93399 0.94377 1.20499 0.96349 1.37286 0.98601 0.93288 1.25495 0.98560 0.94701 0.97815 1.70123 1.16804 1.28852 1.38391 0.85945 0.78322 0.79837 0.80027 1.20853 1.21119 1.18525 1.22727 1.08148 0.92629 0.99052 1.22599 0.95487 1.02694 1.00176 0.87697 0.91551 0.91764 0.82473 0.82091 0.81062 0.82650 0.94363 0.89475 0.91207 0.90225 0.91277 0.96841 0.94536 0.95271 0.93252 0.91510 0.92013 0.91371 0.90652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 9.92 71.98 0.71 -1.70 16 2 C -0.60 -7.67 6.52 71.98 0.47 -7.20 16 3 S 2.40 59.26 4.68 -56.49 -0.26 58.99 16 4 O -0.99 -31.65 18.10 -127.37 -2.31 -33.95 16 5 O -0.95 -33.67 17.33 -127.37 -2.21 -35.88 16 6 C -0.59 -11.59 5.31 71.98 0.38 -11.21 16 7 C 0.07 2.24 2.25 44.92 0.10 2.34 16 8 H 0.08 2.40 7.75 -2.39 -0.02 2.38 16 9 C -0.17 -4.53 8.38 71.98 0.60 -3.92 16 10 N -0.53 -20.66 3.81 -897.05 -3.41 -24.08 16 11 C 0.03 1.21 7.81 127.69 1.00 2.21 16 12 C 0.11 5.36 4.44 86.30 0.38 5.75 16 13 C 0.04 1.99 1.36 -52.93 -0.07 1.92 16 14 C -0.49 -26.65 6.19 25.60 0.16 -26.49 16 15 H 0.05 2.72 7.80 -2.91 -0.02 2.70 16 16 C 0.03 1.87 5.15 84.66 0.44 2.31 16 17 N -0.90 -51.23 12.70 21.45 0.27 -50.96 16 18 Si 0.93 42.45 29.57 68.60 2.03 44.48 16 19 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 20 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 21 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 22 C -0.19 -9.46 9.88 30.60 0.30 -9.15 16 23 C -0.17 -8.43 9.95 30.60 0.30 -8.12 16 24 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 26 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.16 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.16 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.17 1.76 8.11 -2.39 -0.02 1.74 16 30 H 0.16 2.37 6.23 -2.39 -0.01 2.35 16 31 H 0.04 1.22 7.23 -2.39 -0.02 1.20 16 32 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.07 1.76 6.54 -2.38 -0.02 1.74 16 34 H 0.08 2.26 6.17 -2.39 -0.01 2.24 16 35 H 0.07 3.06 5.82 -2.39 -0.01 3.04 16 36 H 0.01 0.51 6.72 -2.39 -0.02 0.50 16 37 H 0.04 1.68 7.60 -2.39 -0.02 1.66 16 38 H 0.03 1.49 6.42 -2.39 -0.02 1.48 16 39 H 0.26 14.05 8.32 -92.71 -0.77 13.27 16 40 H 0.07 3.19 8.11 -2.38 -0.02 3.18 16 41 H 0.06 3.25 8.14 -2.39 -0.02 3.23 16 42 H 0.07 3.31 8.14 -2.39 -0.02 3.30 16 43 H 0.07 3.62 8.14 -2.39 -0.02 3.60 16 Total: -1.00 -74.84 350.75 -0.14 -74.98 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: 0.97 Total: 19.70 kcal Atomic # 6 Polarization: -58.06 SS G_CDS: 4.78 Total: -53.28 kcal Atomic # 7 Polarization: -71.89 SS G_CDS: -3.14 Total: -75.03 kcal Atomic # 8 Polarization: -65.32 SS G_CDS: -4.51 Total: -69.83 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Atomic # 16 Polarization: 59.26 SS G_CDS: -0.26 Total: 58.99 kcal Total: -74.84 -0.14 -74.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602782935.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.060 kcal (2) G-P(sol) polarization free energy of solvation -74.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds