Wall clock time and date at job start Tue Mar 31 2020 06:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36901 * 120.00133 * 2 1 4 4 H 1.07999 * 120.00066 * 208.88169 * 3 2 1 5 5 C 1.39022 * 119.99812 * 28.88035 * 3 2 1 6 6 N 1.31375 * 120.00069 * 18.78405 * 5 3 2 7 7 Si 1.86802 * 119.99820 * 198.77643 * 5 3 2 8 8 H 1.48507 * 109.46885 * 90.00016 * 7 5 3 9 9 H 1.48495 * 109.47157 * 210.00348 * 7 5 3 10 10 H 1.48502 * 109.47336 * 330.00532 * 7 5 3 11 11 C 1.34777 * 119.99715 * 180.02562 * 2 1 3 12 12 O 1.21628 * 119.99889 * 165.44882 * 11 2 1 13 13 C 1.47495 * 120.00155 * 345.44459 * 11 2 1 14 14 C 1.39796 * 120.09538 * 206.70040 * 13 11 2 15 15 C 1.37683 * 119.91048 * 180.02562 * 14 13 11 16 16 C 1.39017 * 120.08940 * 0.02562 * 15 14 13 17 17 O 1.35710 * 119.90501 * 179.97438 * 16 15 14 18 18 C 1.42898 * 116.99894 * 0.96936 * 17 16 15 19 19 C 1.55233 * 110.58318 * 271.70060 * 18 17 16 20 20 C 1.54886 * 102.59130 * 203.34322 * 19 18 17 21 21 C 1.54258 * 104.31397 * 37.92974 * 20 19 18 22 22 C 1.53875 * 106.59900 * 336.32768 * 21 20 19 23 23 C 1.39009 * 120.19003 * 0.23203 * 16 15 14 24 24 C 1.37691 * 120.09236 * 359.49071 * 23 16 15 25 25 H 1.09000 * 109.47004 * 233.98512 * 1 2 3 26 26 H 1.09003 * 109.46831 * 353.97996 * 1 2 3 27 27 H 1.08988 * 109.47394 * 113.98288 * 1 2 3 28 28 H 0.97002 * 119.99870 * 180.02562 * 6 5 3 29 29 H 1.08007 * 120.04441 * 0.02562 * 14 13 11 30 30 H 1.07990 * 119.95777 * 179.97438 * 15 14 13 31 31 H 1.08996 * 110.43710 * 34.29402 * 18 17 16 32 32 H 1.09000 * 110.90102 * 85.04875 * 19 18 17 33 33 H 1.09006 * 110.76583 * 321.57361 * 19 18 17 34 34 H 1.09009 * 110.48388 * 279.19017 * 20 19 18 35 35 H 1.08996 * 110.49126 * 156.68135 * 20 19 18 36 36 H 1.09006 * 110.02971 * 95.61302 * 21 20 19 37 37 H 1.09001 * 110.03700 * 216.99027 * 21 20 19 38 38 H 1.09000 * 110.02877 * 119.28561 * 22 21 20 39 39 H 1.09002 * 110.02793 * 240.66107 * 22 21 20 40 40 H 1.08000 * 119.95607 * 179.74682 * 23 16 15 41 41 H 1.07998 * 120.05054 * 180.23426 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1856 0.0000 4 1 3.1288 1.2437 -0.4518 5 6 1.5841 2.3147 0.5815 6 7 0.5954 2.1876 1.4372 7 14 2.2304 4.0124 0.1463 8 1 1.4812 4.5431 -1.0209 9 1 2.0504 4.9228 1.3056 10 1 3.6735 3.9211 -0.1919 11 6 2.1389 -1.1672 -0.0005 12 8 3.3259 -1.1841 -0.2652 13 6 1.4369 -2.4242 0.3199 14 6 2.1422 -3.5025 0.8622 15 6 1.4832 -4.6742 1.1595 16 6 0.1183 -4.7862 0.9204 17 8 -0.5274 -5.9431 1.2143 18 6 0.2534 -6.9947 1.7857 19 6 0.8825 -7.8743 0.6720 20 6 1.1354 -9.2158 1.4037 21 6 -0.0859 -9.3802 2.3316 22 6 -0.6468 -7.9680 2.5745 23 6 -0.5859 -3.7183 0.3763 24 6 0.0643 -2.5410 0.0815 25 1 -0.3633 -0.6043 0.8312 26 1 -0.3633 1.0220 0.1078 27 1 -0.3633 -0.4177 -0.9388 28 1 0.2006 2.9755 1.8426 29 1 3.2028 -3.4164 1.0478 30 1 2.0275 -5.5078 1.5780 31 1 1.0296 -6.5846 2.4317 32 1 1.8198 -7.4438 0.3195 33 1 0.1840 -8.0104 -0.1538 34 1 2.0542 -9.1643 1.9880 35 1 1.1846 -10.0370 0.6888 36 1 -0.8394 -10.0035 1.8501 37 1 0.2207 -9.8286 3.2766 38 1 -1.6725 -7.9060 2.2108 39 1 -0.6129 -7.7307 3.6378 40 1 -1.6454 -3.8108 0.1884 41 1 -0.4842 -1.7105 -0.3377 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000608777514.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:45 Heat of formation + Delta-G solvation = -23.202459 kcal Electronic energy + Delta-G solvation = -22567.192005 eV Core-core repulsion = 19220.341388 eV Total energy + Delta-G solvation = -3346.850616 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.28359 -38.98743 -37.41986 -35.90246 -34.83490 -31.98460 -30.68304 -29.82100 -28.98366 -27.95788 -26.53112 -24.90681 -22.59995 -22.44095 -20.87240 -20.24417 -19.44655 -18.24785 -17.05446 -16.55691 -15.83975 -15.58320 -15.16655 -14.97519 -14.47261 -14.30470 -14.08382 -13.68593 -13.59918 -13.36157 -12.95712 -12.78456 -12.48179 -12.05856 -11.88018 -11.62639 -11.53034 -11.45240 -11.36973 -11.27906 -11.05445 -10.81397 -10.69328 -10.44342 -10.41686 -10.37597 -9.94127 -9.02184 -8.60117 -8.51287 -7.79073 -7.59186 -6.40018 -3.93791 1.55185 1.74828 3.15272 3.23411 3.24018 3.28941 3.72709 4.09163 4.25631 4.30796 4.47379 4.60152 4.85929 4.91885 5.02591 5.11612 5.15249 5.19390 5.20592 5.27411 5.33858 5.56185 5.59751 5.61306 5.70097 5.74500 5.81130 5.91415 5.96100 6.01329 6.03730 6.24379 6.37892 6.56116 6.60789 6.70329 6.96663 7.06486 7.16377 7.52776 7.64545 8.15449 8.46243 9.12111 9.34743 9.93870 10.63062 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.042663 B = 0.003122 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.143603 B = 8965.185404 C = 9294.736021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.436 5.436 3 C -0.305 4.305 4 H 0.100 0.900 5 C 0.029 3.971 6 N -0.869 5.869 7 Si 0.926 3.074 8 H -0.276 1.276 9 H -0.283 1.283 10 H -0.268 1.268 11 C 0.492 3.508 12 O -0.586 6.586 13 C -0.135 4.135 14 C -0.037 4.037 15 C -0.219 4.219 16 C 0.127 3.873 17 O -0.309 6.309 18 C 0.076 3.924 19 C -0.148 4.148 20 C -0.124 4.124 21 C -0.121 4.121 22 C -0.120 4.120 23 C -0.161 4.161 24 C -0.093 4.093 25 H 0.054 0.946 26 H 0.106 0.894 27 H 0.034 0.966 28 H 0.270 0.730 29 H 0.129 0.871 30 H 0.126 0.874 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.127 0.873 41 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.421 -18.159 1.611 19.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.154 5.154 3 C -0.433 4.433 4 H 0.118 0.882 5 C -0.175 4.175 6 N -0.507 5.507 7 Si 0.752 3.248 8 H -0.202 1.202 9 H -0.209 1.209 10 H -0.192 1.192 11 C 0.282 3.718 12 O -0.471 6.471 13 C -0.138 4.138 14 C -0.056 4.056 15 C -0.238 4.238 16 C 0.081 3.919 17 O -0.223 6.223 18 C 0.020 3.980 19 C -0.185 4.185 20 C -0.162 4.162 21 C -0.159 4.159 22 C -0.158 4.158 23 C -0.179 4.179 24 C -0.111 4.111 25 H 0.073 0.927 26 H 0.124 0.876 27 H 0.052 0.948 28 H 0.080 0.920 29 H 0.147 0.853 30 H 0.143 0.857 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.145 0.855 41 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -5.160 -18.039 1.579 18.829 hybrid contribution 0.299 0.739 0.099 0.803 sum -4.861 -17.300 1.678 18.048 Atomic orbital electron populations 1.22303 0.82198 1.05677 0.96814 1.43360 1.05080 1.04657 1.62267 1.19671 1.03420 0.85016 1.35149 0.88231 1.25387 0.97134 1.00451 0.94485 1.69936 1.25473 1.30686 1.24614 0.85934 0.79652 0.81188 0.78033 1.20220 1.20919 1.19221 1.18079 0.86549 0.83545 0.83610 1.90594 1.16175 1.86859 1.53511 1.20263 0.94049 0.95807 1.03713 1.20953 0.99854 0.90731 0.94106 1.21078 0.93667 0.99892 1.09145 1.19154 0.91036 0.85847 0.95834 1.86034 1.37913 1.21209 1.77103 1.23408 0.93755 0.86314 0.94545 1.23087 1.01542 0.95494 0.98398 1.22278 0.98214 0.97213 0.98460 1.22085 0.97732 0.96216 0.99882 1.22157 1.00280 0.93501 0.99860 1.20356 1.00219 0.91914 1.05449 1.22655 0.94254 0.97589 0.96631 0.92749 0.87604 0.94823 0.92001 0.85290 0.85656 0.90115 0.90768 0.90256 0.91323 0.91191 0.91395 0.91435 0.90268 0.90904 0.85483 0.81764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.62 7.77 59.85 0.46 2.09 16 2 N -0.44 -11.46 2.98 -123.47 -0.37 -11.83 16 3 C -0.30 -8.54 9.20 -15.00 -0.14 -8.68 16 4 H 0.10 2.92 7.49 -52.49 -0.39 2.53 16 5 C 0.03 0.77 4.91 -17.46 -0.09 0.68 16 6 N -0.87 -22.99 11.06 55.50 0.61 -22.38 16 7 Si 0.93 20.43 29.59 -169.99 -5.03 15.40 16 8 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 9 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 11 C 0.49 12.78 7.38 -12.49 -0.09 12.69 16 12 O -0.59 -16.99 16.42 5.25 0.09 -16.91 16 13 C -0.13 -2.88 5.74 -104.96 -0.60 -3.48 16 14 C -0.04 -0.71 9.58 -39.20 -0.38 -1.08 16 15 C -0.22 -3.49 8.91 -39.50 -0.35 -3.84 16 16 C 0.13 2.00 6.67 -39.01 -0.26 1.74 16 17 O -0.31 -4.32 9.85 -18.84 -0.19 -4.51 16 18 C 0.08 0.83 2.69 -24.89 -0.07 0.76 16 19 C -0.15 -1.42 6.47 -24.55 -0.16 -1.58 16 20 C -0.12 -0.92 6.82 -25.08 -0.17 -1.09 16 21 C -0.12 -0.86 6.80 -25.62 -0.17 -1.03 16 22 C -0.12 -1.06 6.56 -25.61 -0.17 -1.22 16 23 C -0.16 -2.61 9.97 -39.50 -0.39 -3.00 16 24 C -0.09 -1.71 7.87 -39.20 -0.31 -2.02 16 25 H 0.05 1.15 6.07 -51.93 -0.32 0.83 16 26 H 0.11 2.51 5.41 -51.93 -0.28 2.23 16 27 H 0.03 0.64 6.55 -51.94 -0.34 0.30 16 28 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 29 H 0.13 2.45 7.87 -52.48 -0.41 2.04 16 30 H 0.13 1.65 5.62 -52.49 -0.30 1.35 16 31 H 0.08 0.87 6.08 -51.93 -0.32 0.55 16 32 H 0.07 0.74 7.89 -51.93 -0.41 0.33 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.48 8.14 -51.92 -0.42 0.05 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.72 8.07 -51.93 -0.42 0.30 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 41 H 0.17 2.86 3.38 -52.58 -0.18 2.68 16 LS Contribution 328.22 15.07 4.95 4.95 Total: -1.00 -31.46 328.22 -8.27 -39.74 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -5.45 Total: 4.60 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: -2.88 Total: -9.07 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: 0.25 Total: -34.20 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: -0.10 Total: -21.42 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.03 Total: 15.40 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.46 -8.27 -39.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608777514.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.534 kcal (2) G-P(sol) polarization free energy of solvation -31.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds