Wall clock time and date at job start Tue Mar 31 2020 06:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36901 * 120.00133 * 2 1 4 4 H 1.07999 * 120.00066 * 208.88169 * 3 2 1 5 5 C 1.39022 * 119.99812 * 28.88035 * 3 2 1 6 6 N 1.31375 * 120.00069 * 18.78405 * 5 3 2 7 7 Si 1.86802 * 119.99820 * 198.77643 * 5 3 2 8 8 H 1.48507 * 109.46885 * 90.00016 * 7 5 3 9 9 H 1.48495 * 109.47157 * 210.00348 * 7 5 3 10 10 H 1.48502 * 109.47336 * 330.00532 * 7 5 3 11 11 C 1.34777 * 119.99715 * 180.02562 * 2 1 3 12 12 O 1.21628 * 119.99889 * 165.44882 * 11 2 1 13 13 C 1.47495 * 120.00155 * 345.44459 * 11 2 1 14 14 C 1.39796 * 120.09538 * 206.70040 * 13 11 2 15 15 C 1.37683 * 119.91048 * 180.02562 * 14 13 11 16 16 C 1.39017 * 120.08940 * 0.02562 * 15 14 13 17 17 O 1.35710 * 119.90501 * 179.97438 * 16 15 14 18 18 C 1.42898 * 116.99894 * 0.96936 * 17 16 15 19 19 C 1.55233 * 110.58318 * 271.70060 * 18 17 16 20 20 C 1.54886 * 102.59130 * 203.34322 * 19 18 17 21 21 C 1.54258 * 104.31397 * 37.92974 * 20 19 18 22 22 C 1.53875 * 106.59900 * 336.32768 * 21 20 19 23 23 C 1.39009 * 120.19003 * 0.23203 * 16 15 14 24 24 C 1.37691 * 120.09236 * 359.49071 * 23 16 15 25 25 H 1.09000 * 109.47004 * 233.98512 * 1 2 3 26 26 H 1.09003 * 109.46831 * 353.97996 * 1 2 3 27 27 H 1.08988 * 109.47394 * 113.98288 * 1 2 3 28 28 H 0.97002 * 119.99870 * 180.02562 * 6 5 3 29 29 H 1.08007 * 120.04441 * 0.02562 * 14 13 11 30 30 H 1.07990 * 119.95777 * 179.97438 * 15 14 13 31 31 H 1.08996 * 110.43710 * 34.29402 * 18 17 16 32 32 H 1.09000 * 110.90102 * 85.04875 * 19 18 17 33 33 H 1.09006 * 110.76583 * 321.57361 * 19 18 17 34 34 H 1.09009 * 110.48388 * 279.19017 * 20 19 18 35 35 H 1.08996 * 110.49126 * 156.68135 * 20 19 18 36 36 H 1.09006 * 110.02971 * 95.61302 * 21 20 19 37 37 H 1.09001 * 110.03700 * 216.99027 * 21 20 19 38 38 H 1.09000 * 110.02877 * 119.28561 * 22 21 20 39 39 H 1.09002 * 110.02793 * 240.66107 * 22 21 20 40 40 H 1.08000 * 119.95607 * 179.74682 * 23 16 15 41 41 H 1.07998 * 120.05054 * 180.23426 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1856 0.0000 4 1 3.1288 1.2437 -0.4518 5 6 1.5841 2.3147 0.5815 6 7 0.5954 2.1876 1.4372 7 14 2.2304 4.0124 0.1463 8 1 1.4812 4.5431 -1.0209 9 1 2.0504 4.9228 1.3056 10 1 3.6735 3.9211 -0.1919 11 6 2.1389 -1.1672 -0.0005 12 8 3.3259 -1.1841 -0.2652 13 6 1.4369 -2.4242 0.3199 14 6 2.1422 -3.5025 0.8622 15 6 1.4832 -4.6742 1.1595 16 6 0.1183 -4.7862 0.9204 17 8 -0.5274 -5.9431 1.2143 18 6 0.2534 -6.9947 1.7857 19 6 0.8825 -7.8743 0.6720 20 6 1.1354 -9.2158 1.4037 21 6 -0.0859 -9.3802 2.3316 22 6 -0.6468 -7.9680 2.5745 23 6 -0.5859 -3.7183 0.3763 24 6 0.0643 -2.5410 0.0815 25 1 -0.3633 -0.6043 0.8312 26 1 -0.3633 1.0220 0.1078 27 1 -0.3633 -0.4177 -0.9388 28 1 0.2006 2.9755 1.8426 29 1 3.2028 -3.4164 1.0478 30 1 2.0275 -5.5078 1.5780 31 1 1.0296 -6.5846 2.4317 32 1 1.8198 -7.4438 0.3195 33 1 0.1840 -8.0104 -0.1538 34 1 2.0542 -9.1643 1.9880 35 1 1.1846 -10.0370 0.6888 36 1 -0.8394 -10.0035 1.8501 37 1 0.2207 -9.8286 3.2766 38 1 -1.6725 -7.9060 2.2108 39 1 -0.6129 -7.7307 3.6378 40 1 -1.6454 -3.8108 0.1884 41 1 -0.4842 -1.7105 -0.3377 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000608777514.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:44 Heat of formation + Delta-G solvation = -41.067241 kcal Electronic energy + Delta-G solvation = -22567.966680 eV Core-core repulsion = 19220.341388 eV Total energy + Delta-G solvation = -3347.625291 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.55388 -40.55822 -38.65351 -37.03353 -36.84630 -33.92321 -32.11450 -31.25562 -29.68509 -28.83619 -28.34731 -26.78866 -24.00032 -23.85312 -21.64452 -21.21035 -21.03446 -19.47004 -18.97489 -18.12942 -17.01263 -16.91097 -16.55481 -16.39357 -15.94436 -15.84143 -15.45965 -15.21476 -14.92020 -14.42700 -14.28625 -14.07035 -13.84646 -13.49808 -13.31269 -13.21325 -13.06107 -12.89602 -12.53394 -12.40654 -12.14117 -12.12716 -12.03653 -11.75855 -11.51706 -11.45543 -11.25397 -10.93531 -10.52111 -10.00854 -9.61003 -9.16350 -8.40292 -6.04704 0.07860 0.37003 1.39225 1.42115 1.54360 2.01019 2.17205 2.27907 2.79293 3.00158 3.11220 3.54577 3.61380 3.80773 3.83061 3.93227 4.02901 4.19691 4.34605 4.43474 4.47523 4.50866 4.52517 4.52800 4.64136 4.73099 4.84745 4.89827 5.03211 5.05378 5.08144 5.19773 5.22831 5.27132 5.29724 5.31183 5.43605 5.43961 5.51813 5.71089 6.11698 6.44529 6.47145 7.08664 7.36254 7.94614 8.61829 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.042663 B = 0.003122 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.143603 B = 8965.185404 C = 9294.736021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.451 5.451 3 C -0.349 4.349 4 H 0.070 0.930 5 C 0.001 3.999 6 N -0.884 5.884 7 Si 0.992 3.008 8 H -0.261 1.261 9 H -0.272 1.272 10 H -0.276 1.276 11 C 0.480 3.520 12 O -0.635 6.635 13 C -0.170 4.170 14 C -0.047 4.047 15 C -0.209 4.209 16 C 0.141 3.859 17 O -0.310 6.310 18 C 0.063 3.937 19 C -0.149 4.149 20 C -0.120 4.120 21 C -0.118 4.118 22 C -0.119 4.119 23 C -0.159 4.159 24 C -0.088 4.088 25 H 0.064 0.936 26 H 0.090 0.910 27 H 0.065 0.935 28 H 0.278 0.722 29 H 0.118 0.882 30 H 0.155 0.845 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.157 0.843 41 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.189 -19.873 2.271 21.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.168 5.168 3 C -0.477 4.477 4 H 0.088 0.912 5 C -0.202 4.202 6 N -0.521 5.521 7 Si 0.815 3.185 8 H -0.186 1.186 9 H -0.196 1.196 10 H -0.201 1.201 11 C 0.272 3.728 12 O -0.524 6.524 13 C -0.173 4.173 14 C -0.066 4.066 15 C -0.228 4.228 16 C 0.095 3.905 17 O -0.223 6.223 18 C 0.007 3.993 19 C -0.186 4.186 20 C -0.158 4.158 21 C -0.155 4.155 22 C -0.156 4.156 23 C -0.177 4.177 24 C -0.106 4.106 25 H 0.082 0.918 26 H 0.108 0.892 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.136 0.864 30 H 0.172 0.828 31 H 0.102 0.898 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.175 0.825 41 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -6.981 -19.775 2.252 21.092 hybrid contribution 0.785 1.075 -0.049 1.332 sum -6.195 -18.700 2.203 19.822 Atomic orbital electron populations 1.22390 0.80029 1.05100 0.98846 1.43585 1.06579 1.04348 1.62260 1.19592 1.03488 0.87002 1.37635 0.91231 1.26144 0.97104 1.03339 0.93574 1.69992 1.25744 1.32065 1.24314 0.84969 0.78561 0.76531 0.78471 1.18599 1.19638 1.20142 1.18829 0.86374 0.85059 0.82559 1.90527 1.18373 1.87874 1.55619 1.20024 0.95477 0.94608 1.07233 1.20970 0.99597 0.91427 0.94636 1.21258 0.94014 0.99326 1.08165 1.19276 0.90839 0.86439 0.93941 1.86061 1.38491 1.20982 1.76777 1.23796 0.94367 0.85902 0.95253 1.23089 1.00965 0.96526 0.98047 1.22287 0.98736 0.96149 0.98617 1.22093 0.97629 0.95208 1.00589 1.22199 0.99667 0.93851 0.99898 1.20618 1.01583 0.91000 1.04495 1.22625 0.92830 0.98784 0.96349 0.91778 0.89186 0.91680 0.91209 0.86368 0.82801 0.89820 0.91317 0.90817 0.90649 0.90136 0.90640 0.90026 0.90626 0.90117 0.82509 0.81148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 3.50 7.77 127.77 0.99 4.49 16 2 N -0.45 -24.60 2.98 -662.80 -1.97 -26.57 16 3 C -0.35 -20.48 9.20 84.09 0.77 -19.71 16 4 H 0.07 4.38 7.49 -2.91 -0.02 4.36 16 5 C 0.00 0.06 4.91 84.95 0.42 0.48 16 6 N -0.88 -46.92 11.06 21.68 0.24 -46.68 16 7 Si 0.99 42.27 29.59 68.60 2.03 44.30 16 8 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 9 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 10 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 11 C 0.48 26.17 7.38 86.68 0.64 26.81 16 12 O -0.63 -39.25 16.42 -4.12 -0.07 -39.32 16 13 C -0.17 -7.42 5.74 -20.08 -0.12 -7.54 16 14 C -0.05 -1.81 9.58 22.52 0.22 -1.59 16 15 C -0.21 -6.34 8.91 22.33 0.20 -6.15 16 16 C 0.14 4.13 6.67 22.64 0.15 4.28 16 17 O -0.31 -7.77 9.85 -90.31 -0.89 -8.66 16 18 C 0.06 1.19 2.69 31.79 0.09 1.27 16 19 C -0.15 -2.50 6.47 32.00 0.21 -2.29 16 20 C -0.12 -1.42 6.82 31.67 0.22 -1.21 16 21 C -0.12 -1.27 6.80 31.32 0.21 -1.05 16 22 C -0.12 -1.72 6.56 31.32 0.21 -1.52 16 23 C -0.16 -4.76 9.97 22.33 0.22 -4.53 16 24 C -0.09 -3.14 7.87 22.52 0.18 -2.97 16 25 H 0.06 2.69 6.07 -2.39 -0.01 2.68 16 26 H 0.09 4.30 5.41 -2.39 -0.01 4.28 16 27 H 0.07 2.44 6.55 -2.39 -0.02 2.43 16 28 H 0.28 13.61 8.31 -92.71 -0.77 12.84 16 29 H 0.12 4.72 7.87 -2.91 -0.02 4.69 16 30 H 0.15 3.69 5.62 -2.92 -0.02 3.68 16 31 H 0.08 1.56 6.08 -2.39 -0.01 1.54 16 32 H 0.07 1.22 7.89 -2.39 -0.02 1.21 16 33 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 34 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 35 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 37 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.08 1.17 8.07 -2.39 -0.02 1.15 16 39 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.16 3.76 8.06 -2.91 -0.02 3.74 16 41 H 0.17 5.74 3.38 -3.00 -0.01 5.73 16 Total: -1.00 -70.94 328.22 4.98 -65.96 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: 1.04 Total: 22.19 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: 4.60 Total: -11.23 kcal Atomic # 7 Polarization: -71.51 SS G_CDS: -1.73 Total: -73.25 kcal Atomic # 8 Polarization: -47.02 SS G_CDS: -0.96 Total: -47.98 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -70.94 4.98 -65.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608777514.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.891 kcal (2) G-P(sol) polarization free energy of solvation -70.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds