Wall clock time and date at job start Tue Mar 31 2020 06:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46501 * 120.00012 * 2 1 4 4 C 1.53006 * 109.46672 * 269.99788 * 3 2 1 5 5 H 1.08992 * 109.47018 * 60.00618 * 4 3 2 6 6 O 1.42902 * 109.47294 * 299.99736 * 4 3 2 7 7 C 1.53001 * 109.46440 * 180.02562 * 4 3 2 8 8 C 1.53004 * 117.49677 * 248.74711 * 7 4 3 9 9 C 1.53005 * 117.49520 * 180.08872 * 7 4 3 10 10 C 1.34779 * 119.99904 * 180.02562 * 2 1 3 11 11 O 1.21548 * 119.99980 * 184.47494 * 10 2 1 12 12 C 1.47888 * 120.00107 * 4.46974 * 10 2 1 13 13 C 1.39918 * 120.02306 * 317.98236 * 12 10 2 14 14 C 1.38323 * 120.35602 * 180.02562 * 13 12 10 15 15 C 1.37747 * 120.41742 * 359.97438 * 14 13 12 16 16 C 1.40750 * 120.03740 * 0.02562 * 15 14 13 17 17 C 1.41442 * 120.18083 * 180.02562 * 16 15 14 18 18 H 1.07998 * 119.99812 * 334.78025 * 17 16 15 19 19 C 1.39935 * 120.00011 * 154.78079 * 17 16 15 20 20 N 1.30831 * 120.00037 * 343.24091 * 19 17 16 21 21 Si 1.86798 * 119.99953 * 163.24338 * 19 17 16 22 22 H 1.48498 * 109.47137 * 89.99723 * 21 19 17 23 23 H 1.48502 * 109.46994 * 209.99897 * 21 19 17 24 24 H 1.48500 * 109.47219 * 329.99753 * 21 19 17 25 25 C 1.38996 * 120.02593 * 138.00691 * 12 10 2 26 26 H 1.09007 * 109.47003 * 271.43834 * 1 2 3 27 27 H 1.09002 * 109.47476 * 31.43445 * 1 2 3 28 28 H 1.08998 * 109.47626 * 151.44039 * 1 2 3 29 29 H 1.08992 * 109.47309 * 30.00079 * 3 2 1 30 30 H 1.09002 * 109.46836 * 150.00351 * 3 2 1 31 31 H 0.96694 * 114.00107 * 300.00117 * 6 4 3 32 32 H 1.09000 * 115.55734 * 34.42054 * 7 4 3 33 33 H 1.08997 * 117.49785 * 0.02562 * 8 7 4 34 34 H 1.09004 * 117.49699 * 145.02615 * 8 7 4 35 35 H 1.09002 * 117.49930 * 214.97588 * 9 7 4 36 36 H 1.08997 * 117.49832 * 359.97438 * 9 7 4 37 37 H 1.08004 * 119.82146 * 0.04495 * 13 12 10 38 38 H 1.08007 * 119.79346 * 179.97438 * 14 13 12 39 39 H 1.08001 * 119.98545 * 180.02562 * 15 14 13 40 40 H 0.96996 * 120.00070 * 179.97438 * 20 19 17 41 41 H 1.08003 * 120.19797 * 0.25252 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 -1.4426 5 1 1.5001 1.8407 -1.9563 6 8 3.2248 0.7144 -2.1162 7 6 3.2180 3.0350 -1.4425 8 6 2.4763 4.2796 -1.9343 9 6 3.5695 3.6478 -2.7997 10 6 2.1388 -1.1672 -0.0005 11 8 3.3515 -1.1689 0.0816 12 6 1.4028 -2.4460 -0.1009 13 6 0.2213 -2.6326 0.6251 14 6 -0.4724 -3.8260 0.5368 15 6 -0.0089 -4.8442 -0.2669 16 6 1.1777 -4.6749 -1.0047 17 6 1.6560 -5.7182 -1.8313 18 1 1.3905 -6.7426 -1.6159 19 6 2.4733 -5.4230 -2.9282 20 7 2.5329 -4.2001 -3.3892 21 14 3.4792 -6.7751 -3.7342 22 1 2.6814 -7.4083 -4.8147 23 1 4.7186 -6.1938 -4.3096 24 1 3.8372 -7.7979 -2.7188 25 6 1.8843 -3.4636 -0.9161 26 1 -0.3633 0.0258 1.0274 27 1 -0.3634 0.8768 -0.5359 28 1 -0.3634 -0.9026 -0.4913 29 1 1.6085 2.0283 0.5138 30 1 3.1499 1.1383 0.5138 31 1 4.0872 0.5459 -1.7127 32 1 3.9346 3.1639 -0.6314 33 1 1.4428 4.1547 -2.2575 34 1 2.7052 5.2273 -1.4469 35 1 4.5172 4.1802 -2.8813 36 1 3.2558 3.1069 -3.6925 37 1 -0.1512 -1.8404 1.2577 38 1 -1.3832 -3.9604 1.1015 39 1 -0.5563 -5.7730 -0.3310 40 1 3.0997 -3.9954 -4.1493 41 1 2.7983 -3.3255 -1.4748 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610669895.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:42 Heat of formation + Delta-G solvation = -37.920580 kcal Electronic energy + Delta-G solvation = -23085.596633 eV Core-core repulsion = 19738.107791 eV Total energy + Delta-G solvation = -3347.488842 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.68816 -38.25873 -36.94593 -35.42203 -34.71894 -33.64202 -30.66389 -29.45230 -28.92500 -26.37972 -25.27464 -24.03286 -22.48161 -21.44275 -20.95810 -20.80971 -18.82914 -17.47905 -16.59849 -16.19706 -15.80133 -15.66734 -15.05144 -14.80355 -14.74842 -14.31295 -13.78861 -13.45179 -13.18135 -12.80209 -12.64258 -12.47289 -12.30699 -12.01031 -11.67830 -11.62312 -11.46629 -11.13833 -11.05612 -11.00440 -10.62556 -10.57485 -10.47077 -10.32241 -10.04523 -9.93804 -9.64778 -9.17746 -8.93509 -8.16481 -7.55223 -7.45311 -6.76233 -4.38076 2.38882 2.84836 3.09800 3.12846 3.18921 3.36320 3.63275 3.80187 3.94608 4.50753 4.61777 4.64476 4.77640 4.96859 5.01107 5.24006 5.34786 5.47203 5.48992 5.59514 5.62612 5.66653 5.75078 5.81882 5.93649 6.01189 6.14727 6.17488 6.22369 6.36282 6.73267 6.92066 7.02078 7.09710 7.24761 7.42688 7.70833 7.82485 7.91619 7.97717 8.03349 8.20829 8.53689 8.84035 8.86958 8.92362 10.18416 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016463 B = 0.004812 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.354002 B = 5817.636953 C = 7098.030606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.614 5.614 3 C 0.089 3.911 4 C 0.122 3.878 5 H 0.093 0.907 6 O -0.543 6.543 7 C -0.191 4.191 8 C -0.176 4.176 9 C -0.165 4.165 10 C 0.580 3.420 11 O -0.550 6.550 12 C -0.121 4.121 13 C -0.223 4.223 14 C -0.099 4.099 15 C -0.214 4.214 16 C 0.102 3.898 17 C -0.461 4.461 18 H 0.080 0.920 19 C 0.074 3.926 20 N -0.787 5.787 21 Si 0.909 3.091 22 H -0.270 1.270 23 H -0.275 1.275 24 H -0.260 1.260 25 C -0.096 4.096 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.094 0.906 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.378 0.622 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.283 0.717 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.508 13.198 2.574 13.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.348 5.348 3 C -0.035 4.035 4 C 0.061 3.939 5 H 0.111 0.889 6 O -0.348 6.348 7 C -0.210 4.210 8 C -0.213 4.213 9 C -0.202 4.202 10 C 0.372 3.628 11 O -0.428 6.428 12 C -0.124 4.124 13 C -0.243 4.243 14 C -0.117 4.117 15 C -0.234 4.234 16 C 0.099 3.901 17 C -0.490 4.490 18 H 0.098 0.902 19 C -0.144 4.144 20 N -0.411 5.411 21 Si 0.733 3.267 22 H -0.195 1.195 23 H -0.200 1.200 24 H -0.184 1.184 25 C -0.116 4.116 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.112 0.888 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.225 0.775 32 H 0.123 0.877 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.117 0.883 37 H 0.115 0.885 38 H 0.110 0.890 39 H 0.113 0.887 40 H 0.094 0.906 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.284 13.319 2.038 13.535 hybrid contribution 0.754 -0.310 -0.038 0.816 sum -0.530 13.009 2.000 13.173 Atomic orbital electron populations 1.22074 0.79679 1.03714 1.01005 1.47574 1.06810 1.05214 1.75162 1.22036 0.98588 0.85971 0.96920 1.21844 0.94052 0.84939 0.93072 0.88865 1.86638 1.33619 1.58602 1.55921 1.23070 1.03945 0.94843 0.99127 1.22952 0.97682 0.96350 1.04279 1.22845 0.99529 1.03138 0.94695 1.18841 0.86819 0.83731 0.73446 1.90620 1.14352 1.87531 1.50301 1.19410 0.96989 0.93428 1.02554 1.20551 0.98257 0.98613 1.06905 1.20431 0.98355 0.93946 0.98963 1.21089 0.98242 0.98930 1.05158 1.17568 0.89646 0.92313 0.90538 1.19571 1.26195 0.94711 1.08531 0.90181 1.25936 0.95458 0.96420 0.96630 1.69787 1.30950 1.20257 1.20118 0.86305 0.79483 0.81364 0.79578 1.19480 1.19993 1.18402 1.21477 0.99847 0.92458 0.97865 0.93148 0.92623 0.88751 0.90313 0.89796 0.77451 0.87658 0.88717 0.88853 0.88931 0.88301 0.88493 0.88975 0.88726 0.90550 0.85437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.14 8.93 59.84 0.53 1.68 16 2 N -0.61 -10.65 2.83 -182.68 -0.52 -11.16 16 3 C 0.09 1.24 5.16 -4.04 -0.02 1.22 16 4 C 0.12 1.67 3.43 -26.73 -0.09 1.57 16 5 H 0.09 1.30 7.90 -51.93 -0.41 0.89 16 6 O -0.54 -9.52 12.15 -37.78 -0.46 -9.98 16 7 C -0.19 -2.06 5.36 -90.61 -0.49 -2.54 16 8 C -0.18 -1.60 10.18 -26.69 -0.27 -1.87 16 9 C -0.17 -1.70 10.16 -26.69 -0.27 -1.98 16 10 C 0.58 12.82 6.75 -12.31 -0.08 12.73 16 11 O -0.55 -13.31 15.60 2.78 0.04 -13.27 16 12 C -0.12 -2.89 5.14 -105.04 -0.54 -3.43 16 13 C -0.22 -4.76 7.50 -38.92 -0.29 -5.05 16 14 C -0.10 -2.12 10.01 -39.73 -0.40 -2.52 16 15 C -0.21 -5.14 9.78 -38.81 -0.38 -5.52 16 16 C 0.10 2.72 5.57 -106.87 -0.59 2.12 16 17 C -0.46 -12.25 9.05 -37.73 -0.34 -12.59 16 18 H 0.08 2.02 7.90 -52.49 -0.41 1.61 16 19 C 0.07 1.89 5.16 -17.34 -0.09 1.80 16 20 N -0.79 -20.92 10.94 55.55 0.61 -20.31 16 21 Si 0.91 19.00 29.59 -169.99 -5.03 13.97 16 22 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 23 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 24 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 25 C -0.10 -2.59 8.28 -38.44 -0.32 -2.91 16 26 H 0.05 0.64 7.28 -51.92 -0.38 0.27 16 27 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 28 H 0.09 1.60 5.49 -51.93 -0.29 1.32 16 29 H 0.08 0.87 8.07 -51.93 -0.42 0.45 16 30 H 0.08 1.25 7.36 -51.93 -0.38 0.86 16 31 H 0.38 6.22 8.59 45.56 0.39 6.61 16 32 H 0.11 1.06 8.11 -51.93 -0.42 0.63 16 33 H 0.09 0.84 8.05 -51.93 -0.42 0.42 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.10 1.78 5.76 -52.48 -0.30 1.47 16 38 H 0.09 1.68 8.06 -52.48 -0.42 1.25 16 39 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 40 H 0.28 6.95 8.30 -40.82 -0.34 6.62 16 41 H 0.13 3.71 6.18 -52.48 -0.32 3.39 16 LS Contribution 340.52 15.07 5.13 5.13 Total: -1.00 -30.20 340.52 -8.90 -39.10 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: -3.64 Total: -17.28 kcal Atomic # 7 Polarization: -31.56 SS G_CDS: 0.09 Total: -31.47 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: -0.42 Total: -23.24 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.03 Total: 13.97 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.20 -8.90 -39.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610669895.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.178 kcal (2) G-P(sol) polarization free energy of solvation -30.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds