Wall clock time and date at job start Tue Mar 31 2020 06:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46501 * 120.00012 * 2 1 4 4 C 1.53006 * 109.46672 * 269.99788 * 3 2 1 5 5 H 1.08992 * 109.47018 * 60.00618 * 4 3 2 6 6 O 1.42902 * 109.47294 * 299.99736 * 4 3 2 7 7 C 1.53001 * 109.46440 * 180.02562 * 4 3 2 8 8 C 1.53004 * 117.49677 * 248.74711 * 7 4 3 9 9 C 1.53005 * 117.49520 * 180.08872 * 7 4 3 10 10 C 1.34779 * 119.99904 * 180.02562 * 2 1 3 11 11 O 1.21548 * 119.99980 * 184.47494 * 10 2 1 12 12 C 1.47888 * 120.00107 * 4.46974 * 10 2 1 13 13 C 1.39918 * 120.02306 * 317.98236 * 12 10 2 14 14 C 1.38323 * 120.35602 * 180.02562 * 13 12 10 15 15 C 1.37747 * 120.41742 * 359.97438 * 14 13 12 16 16 C 1.40750 * 120.03740 * 0.02562 * 15 14 13 17 17 C 1.41442 * 120.18083 * 180.02562 * 16 15 14 18 18 H 1.07998 * 119.99812 * 334.78025 * 17 16 15 19 19 C 1.39935 * 120.00011 * 154.78079 * 17 16 15 20 20 N 1.30831 * 120.00037 * 343.24091 * 19 17 16 21 21 Si 1.86798 * 119.99953 * 163.24338 * 19 17 16 22 22 H 1.48498 * 109.47137 * 89.99723 * 21 19 17 23 23 H 1.48502 * 109.46994 * 209.99897 * 21 19 17 24 24 H 1.48500 * 109.47219 * 329.99753 * 21 19 17 25 25 C 1.38996 * 120.02593 * 138.00691 * 12 10 2 26 26 H 1.09007 * 109.47003 * 271.43834 * 1 2 3 27 27 H 1.09002 * 109.47476 * 31.43445 * 1 2 3 28 28 H 1.08998 * 109.47626 * 151.44039 * 1 2 3 29 29 H 1.08992 * 109.47309 * 30.00079 * 3 2 1 30 30 H 1.09002 * 109.46836 * 150.00351 * 3 2 1 31 31 H 0.96694 * 114.00107 * 300.00117 * 6 4 3 32 32 H 1.09000 * 115.55734 * 34.42054 * 7 4 3 33 33 H 1.08997 * 117.49785 * 0.02562 * 8 7 4 34 34 H 1.09004 * 117.49699 * 145.02615 * 8 7 4 35 35 H 1.09002 * 117.49930 * 214.97588 * 9 7 4 36 36 H 1.08997 * 117.49832 * 359.97438 * 9 7 4 37 37 H 1.08004 * 119.82146 * 0.04495 * 13 12 10 38 38 H 1.08007 * 119.79346 * 179.97438 * 14 13 12 39 39 H 1.08001 * 119.98545 * 180.02562 * 15 14 13 40 40 H 0.96996 * 120.00070 * 179.97438 * 20 19 17 41 41 H 1.08003 * 120.19797 * 0.25252 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 -1.4426 5 1 1.5001 1.8407 -1.9563 6 8 3.2248 0.7144 -2.1162 7 6 3.2180 3.0350 -1.4425 8 6 2.4763 4.2796 -1.9343 9 6 3.5695 3.6478 -2.7997 10 6 2.1388 -1.1672 -0.0005 11 8 3.3515 -1.1689 0.0816 12 6 1.4028 -2.4460 -0.1009 13 6 0.2213 -2.6326 0.6251 14 6 -0.4724 -3.8260 0.5368 15 6 -0.0089 -4.8442 -0.2669 16 6 1.1777 -4.6749 -1.0047 17 6 1.6560 -5.7182 -1.8313 18 1 1.3905 -6.7426 -1.6159 19 6 2.4733 -5.4230 -2.9282 20 7 2.5329 -4.2001 -3.3892 21 14 3.4792 -6.7751 -3.7342 22 1 2.6814 -7.4083 -4.8147 23 1 4.7186 -6.1938 -4.3096 24 1 3.8372 -7.7979 -2.7188 25 6 1.8843 -3.4636 -0.9161 26 1 -0.3633 0.0258 1.0274 27 1 -0.3634 0.8768 -0.5359 28 1 -0.3634 -0.9026 -0.4913 29 1 1.6085 2.0283 0.5138 30 1 3.1499 1.1383 0.5138 31 1 4.0872 0.5459 -1.7127 32 1 3.9346 3.1639 -0.6314 33 1 1.4428 4.1547 -2.2575 34 1 2.7052 5.2273 -1.4469 35 1 4.5172 4.1802 -2.8813 36 1 3.2558 3.1069 -3.6925 37 1 -0.1512 -1.8404 1.2577 38 1 -1.3832 -3.9604 1.1015 39 1 -0.5563 -5.7730 -0.3310 40 1 3.0997 -3.9954 -4.1493 41 1 2.7983 -3.3255 -1.4748 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610669895.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:42 Heat of formation + Delta-G solvation = -56.890161 kcal Electronic energy + Delta-G solvation = -23086.419215 eV Core-core repulsion = 19738.107791 eV Total energy + Delta-G solvation = -3348.311425 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.20687 -39.49686 -38.63878 -36.66316 -36.11670 -35.47874 -32.33777 -31.30101 -30.30457 -27.72131 -27.13712 -25.37542 -23.26292 -22.97593 -22.79202 -21.82478 -20.45828 -19.23562 -17.82832 -17.68068 -17.34471 -16.99691 -16.63742 -16.53232 -15.98378 -15.63919 -15.25515 -14.88190 -14.73754 -14.37397 -14.06278 -13.94117 -13.77292 -13.54049 -13.16648 -12.94129 -12.79853 -12.72214 -12.42316 -12.30895 -12.18613 -12.12136 -11.90701 -11.50947 -11.46836 -11.20858 -11.05135 -11.04602 -10.63955 -9.58403 -9.37948 -9.32259 -8.65073 -6.37165 0.55552 1.02603 1.35569 1.46296 1.51809 1.87936 2.17893 2.21882 2.75581 2.78687 3.52411 3.63415 3.68697 3.79798 3.91913 4.06815 4.15309 4.29154 4.34257 4.39331 4.48766 4.56289 4.63979 4.77259 4.77922 4.89531 4.94322 4.99336 5.01484 5.09812 5.22512 5.23632 5.25621 5.33413 5.52597 5.63847 5.87396 5.98564 6.05688 6.29464 6.38724 6.62620 6.73546 6.89568 6.96176 7.27714 8.31317 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016463 B = 0.004812 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.354002 B = 5817.636953 C = 7098.030606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.605 5.605 3 C 0.088 3.912 4 C 0.120 3.880 5 H 0.092 0.908 6 O -0.574 6.574 7 C -0.196 4.196 8 C -0.153 4.153 9 C -0.176 4.176 10 C 0.570 3.430 11 O -0.585 6.585 12 C -0.131 4.131 13 C -0.201 4.201 14 C -0.095 4.095 15 C -0.222 4.222 16 C 0.070 3.930 17 C -0.500 4.500 18 H 0.082 0.918 19 C 0.031 3.969 20 N -0.826 5.826 21 Si 0.980 3.020 22 H -0.256 1.256 23 H -0.273 1.273 24 H -0.256 1.256 25 C -0.133 4.133 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.068 0.932 29 H 0.122 0.878 30 H 0.073 0.927 31 H 0.377 0.623 32 H 0.115 0.885 33 H 0.099 0.901 34 H 0.115 0.885 35 H 0.105 0.895 36 H 0.080 0.920 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.107 0.893 40 H 0.285 0.715 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.274 15.094 4.009 15.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.337 5.337 3 C -0.035 4.035 4 C 0.060 3.940 5 H 0.110 0.890 6 O -0.380 6.380 7 C -0.214 4.214 8 C -0.190 4.190 9 C -0.214 4.214 10 C 0.361 3.639 11 O -0.466 6.466 12 C -0.134 4.134 13 C -0.221 4.221 14 C -0.113 4.113 15 C -0.242 4.242 16 C 0.068 3.932 17 C -0.529 4.529 18 H 0.100 0.900 19 C -0.183 4.183 20 N -0.452 5.452 21 Si 0.800 3.200 22 H -0.181 1.181 23 H -0.197 1.197 24 H -0.180 1.180 25 C -0.154 4.154 26 H 0.099 0.901 27 H 0.107 0.893 28 H 0.087 0.913 29 H 0.140 0.860 30 H 0.091 0.909 31 H 0.224 0.776 32 H 0.133 0.867 33 H 0.118 0.882 34 H 0.134 0.866 35 H 0.123 0.877 36 H 0.098 0.902 37 H 0.155 0.845 38 H 0.156 0.844 39 H 0.125 0.875 40 H 0.095 0.905 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.104 15.253 3.485 15.952 hybrid contribution 1.151 -0.740 -0.370 1.418 sum -1.953 14.513 3.115 14.972 Atomic orbital electron populations 1.22285 0.77677 1.04107 1.03101 1.47614 1.08159 1.04859 1.73042 1.22283 0.98621 0.85152 0.97396 1.21968 0.93938 0.85605 0.92477 0.89016 1.86606 1.33966 1.60318 1.57121 1.22911 1.04704 0.94058 0.99774 1.23063 0.97407 0.96119 1.02401 1.22875 1.00985 1.03636 0.93858 1.18721 0.86460 0.84736 0.74007 1.90590 1.15670 1.88147 1.52212 1.19756 0.97958 0.93820 1.01884 1.21011 0.96378 0.99461 1.05229 1.20908 0.99533 0.92865 0.98022 1.21384 0.97460 1.00341 1.04970 1.17912 0.91003 0.92601 0.91700 1.19852 1.28381 0.94925 1.09782 0.89978 1.26808 0.96002 0.98679 0.96860 1.69891 1.32084 1.22368 1.20879 0.85235 0.77781 0.78216 0.78721 1.18069 1.19735 1.17964 1.21259 0.99702 0.94329 1.00095 0.90116 0.89259 0.91324 0.86024 0.90902 0.77560 0.86673 0.88210 0.86627 0.87705 0.90161 0.84498 0.84441 0.87516 0.90462 0.89085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.80 8.93 127.77 1.14 2.94 16 2 N -0.61 -19.96 2.83 -850.14 -2.40 -22.37 16 3 C 0.09 2.27 5.16 86.38 0.45 2.72 16 4 C 0.12 3.16 3.43 30.60 0.11 3.27 16 5 H 0.09 2.41 7.90 -2.39 -0.02 2.40 16 6 O -0.57 -20.95 12.15 -146.55 -1.78 -22.73 16 7 C -0.20 -3.86 5.36 -10.79 -0.06 -3.92 16 8 C -0.15 -2.32 10.18 30.62 0.31 -2.01 16 9 C -0.18 -3.43 10.16 30.62 0.31 -3.11 16 10 C 0.57 25.47 6.75 86.80 0.59 26.06 16 11 O -0.58 -29.47 15.60 -1.43 -0.02 -29.49 16 12 C -0.13 -6.36 5.14 -20.13 -0.10 -6.46 16 13 C -0.20 -8.14 7.50 22.70 0.17 -7.97 16 14 C -0.10 -3.85 10.01 22.17 0.22 -3.63 16 15 C -0.22 -10.60 9.78 22.77 0.22 -10.38 16 16 C 0.07 3.90 5.57 -21.32 -0.12 3.78 16 17 C -0.50 -27.88 9.05 23.47 0.21 -27.67 16 18 H 0.08 4.33 7.90 -2.91 -0.02 4.31 16 19 C 0.03 1.66 5.16 85.25 0.44 2.10 16 20 N -0.83 -46.79 10.94 21.82 0.24 -46.55 16 21 Si 0.98 40.51 29.59 68.60 2.03 42.54 16 22 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 23 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 24 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 25 C -0.13 -7.57 8.28 23.01 0.19 -7.38 16 26 H 0.08 1.63 7.28 -2.38 -0.02 1.61 16 27 H 0.09 1.72 8.08 -2.39 -0.02 1.71 16 28 H 0.07 2.16 5.49 -2.39 -0.01 2.14 16 29 H 0.12 2.13 8.07 -2.39 -0.02 2.11 16 30 H 0.07 2.09 7.36 -2.39 -0.02 2.07 16 31 H 0.38 13.31 8.59 -74.06 -0.64 12.67 16 32 H 0.12 2.07 8.11 -2.39 -0.02 2.05 16 33 H 0.10 1.43 8.05 -2.39 -0.02 1.41 16 34 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.14 4.40 5.76 -2.91 -0.02 4.38 16 38 H 0.14 4.33 8.06 -2.91 -0.02 4.30 16 39 H 0.11 4.72 8.06 -2.91 -0.02 4.69 16 40 H 0.28 14.92 8.30 -92.71 -0.77 14.15 16 41 H 0.09 5.76 6.18 -2.91 -0.02 5.74 16 Total: -1.00 -71.33 340.52 2.55 -68.79 By element: Atomic # 1 Polarization: 41.08 SS G_CDS: 0.41 Total: 41.49 kcal Atomic # 6 Polarization: -35.75 SS G_CDS: 4.08 Total: -31.67 kcal Atomic # 7 Polarization: -66.75 SS G_CDS: -2.17 Total: -68.92 kcal Atomic # 8 Polarization: -50.42 SS G_CDS: -1.80 Total: -52.22 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 2.03 Total: 42.54 kcal Total: -71.33 2.55 -68.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610669895.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.897 kcal (2) G-P(sol) polarization free energy of solvation -71.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds