Wall clock time and date at job start Tue Mar 31 2020 07:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 114.00354 * 2 1 4 4 C 1.52994 * 109.47509 * 179.97438 * 3 2 1 5 5 N 1.46901 * 109.47345 * 67.05928 * 4 3 2 6 6 C 1.46901 * 110.99833 * 290.02532 * 5 4 3 7 7 C 1.50694 * 109.47308 * 299.69107 * 6 5 4 8 8 H 1.07996 * 119.99786 * 354.88804 * 7 6 5 9 9 C 1.37873 * 120.00298 * 174.88067 * 7 6 5 10 10 N 1.31514 * 120.00177 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 120.00287 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.46827 * 359.97438 * 11 9 7 13 13 H 1.48493 * 109.47068 * 120.00144 * 11 9 7 14 14 H 1.48502 * 109.47274 * 240.00389 * 11 9 7 15 15 C 1.46901 * 110.99504 * 53.97486 * 5 4 3 16 16 C 1.50698 * 109.47164 * 66.05007 * 15 5 4 17 17 C 1.33996 * 124.92344 * 90.00161 * 16 15 5 18 18 C 1.46790 * 106.18363 * 180.02562 * 17 16 15 19 19 C 1.39401 * 134.36807 * 179.97438 * 18 17 16 20 20 C 1.36731 * 119.71564 * 179.97438 * 19 18 17 21 21 C 1.38748 * 120.41945 * 0.04584 * 20 19 18 22 22 C 1.37847 * 120.68328 * 359.97438 * 21 20 19 23 23 C 1.38948 * 119.81556 * 359.97438 * 22 21 20 24 24 O 1.34452 * 124.92057 * 270.02088 * 16 15 5 25 25 H 1.09006 * 109.46893 * 60.00254 * 1 2 3 26 26 H 1.08992 * 109.47640 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47280 * 300.00772 * 1 2 3 28 28 H 1.09001 * 109.47318 * 59.99810 * 3 2 1 29 29 H 1.08998 * 109.46905 * 299.99983 * 3 2 1 30 30 H 1.09003 * 109.47017 * 307.06251 * 4 3 2 31 31 H 1.08998 * 109.47807 * 187.06294 * 4 3 2 32 32 H 1.09002 * 109.47176 * 59.69859 * 6 5 4 33 33 H 1.09009 * 109.46894 * 179.69666 * 6 5 4 34 34 H 0.96992 * 120.00649 * 179.97438 * 10 9 7 35 35 H 1.08999 * 109.47406 * 306.04635 * 15 5 4 36 36 H 1.09003 * 109.46960 * 186.04899 * 15 5 4 37 37 H 1.07993 * 126.90631 * 0.02562 * 17 16 15 38 38 H 1.07997 * 120.14113 * 0.02562 * 19 18 17 39 39 H 1.08005 * 119.79396 * 180.02562 * 20 19 18 40 40 H 1.07996 * 119.65831 * 180.02562 * 21 20 19 41 41 H 1.07996 * 120.09232 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9815 0.6076 -1.2745 6 6 3.6013 -0.8079 -1.3734 7 6 4.2433 -1.5802 -0.2498 8 1 4.9360 -1.0881 0.4168 9 6 3.9464 -2.9149 -0.0728 10 7 3.1032 -3.5143 -0.8849 11 14 4.7416 -3.8720 1.3204 12 1 5.6452 -2.9748 2.0845 13 1 3.6874 -4.3996 2.2233 14 1 5.5250 -5.0024 0.7603 15 6 3.4559 1.3745 -2.4118 16 6 4.0626 2.7540 -2.4108 17 6 5.1977 3.0932 -3.0370 18 6 5.4030 4.5213 -2.7665 19 6 6.3782 5.4509 -3.1247 20 6 6.2718 6.7445 -2.6948 21 6 5.2009 7.1363 -1.9044 22 6 4.2274 6.2311 -1.5399 23 6 4.3159 4.9118 -1.9670 24 8 3.5437 3.8226 -1.7812 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5140 0.8899 28 1 1.6887 1.8464 0.8900 29 1 1.6887 1.8463 -0.8900 30 1 3.8484 0.5386 0.8210 31 1 3.9782 2.1726 0.1270 32 1 2.5173 -0.8987 -1.3038 33 1 3.9390 -1.2089 -2.3292 34 1 2.8945 -4.4533 -0.7607 35 1 2.3722 1.4542 -2.3266 36 1 3.7108 0.8662 -3.3417 37 1 5.8335 2.4461 -3.6227 38 1 7.2135 5.1508 -3.7399 39 1 7.0264 7.4658 -2.9719 40 1 5.1289 8.1614 -1.5721 41 1 3.3982 6.5463 -0.9240 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610859507.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:31 Heat of formation + Delta-G solvation = 1.863390 kcal Electronic energy + Delta-G solvation = -23105.240520 eV Core-core repulsion = 19759.476841 eV Total energy + Delta-G solvation = -3345.763679 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.30354 -38.32964 -37.70689 -35.81094 -32.88863 -32.36900 -30.37846 -30.19268 -28.91691 -27.02747 -25.86799 -24.63872 -22.92656 -22.54921 -21.70392 -20.95411 -19.54653 -17.26523 -16.81595 -16.32434 -16.11883 -15.89186 -15.74347 -15.28802 -14.61255 -14.34494 -14.11744 -13.91571 -13.70937 -13.54453 -12.96791 -12.52020 -12.24068 -12.08006 -11.97548 -11.92896 -11.46478 -11.34504 -11.09454 -11.05223 -10.87281 -10.68285 -10.61463 -10.14210 -10.01154 -9.81476 -9.09210 -8.97575 -8.58390 -8.31219 -8.00295 -7.16464 -5.89930 -3.87659 0.96934 1.38741 2.54134 2.86150 3.37716 3.44931 3.49611 3.74317 4.40949 4.49251 4.56066 4.73660 4.89688 5.05322 5.17904 5.27990 5.35036 5.42176 5.47719 5.53731 5.60160 5.69371 5.79604 5.84170 5.88242 5.91065 5.96155 6.09886 6.15094 6.24256 6.26222 6.31506 6.42032 6.59271 6.72706 6.79066 7.26785 7.37600 7.69159 7.84432 7.86594 8.07508 8.27365 8.61847 9.17166 9.73514 11.21580 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021823 B = 0.004090 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.744357 B = 6843.625908 C = 7482.808199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.345 6.345 3 C 0.024 3.976 4 C 0.062 3.938 5 N -0.525 5.525 6 C 0.181 3.819 7 C -0.493 4.493 8 H 0.059 0.941 9 C 0.060 3.940 10 N -0.897 5.897 11 Si 0.891 3.109 12 H -0.274 1.274 13 H -0.287 1.287 14 H -0.286 1.286 15 C 0.116 3.884 16 C 0.064 3.936 17 C -0.203 4.203 18 C -0.123 4.123 19 C -0.074 4.074 20 C -0.141 4.141 21 C -0.104 4.104 22 C -0.107 4.107 23 C 0.047 3.953 24 O -0.194 6.194 25 H 0.029 0.971 26 H 0.082 0.918 27 H 0.029 0.971 28 H 0.037 0.963 29 H 0.042 0.958 30 H 0.099 0.901 31 H 0.065 0.935 32 H 0.041 0.959 33 H 0.020 0.980 34 H 0.257 0.743 35 H 0.051 0.949 36 H 0.103 0.897 37 H 0.158 0.842 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.130 0.870 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.062 18.103 -3.159 18.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.263 6.263 3 C -0.054 4.054 4 C -0.067 4.067 5 N -0.249 5.249 6 C 0.057 3.943 7 C -0.532 4.532 8 H 0.077 0.923 9 C -0.141 4.141 10 N -0.537 5.537 11 Si 0.720 3.280 12 H -0.199 1.199 13 H -0.213 1.213 14 H -0.213 1.213 15 C -0.012 4.012 16 C 0.016 3.984 17 C -0.223 4.223 18 C -0.124 4.124 19 C -0.092 4.092 20 C -0.159 4.159 21 C -0.122 4.122 22 C -0.125 4.125 23 C -0.001 4.001 24 O -0.096 6.096 25 H 0.047 0.953 26 H 0.101 0.899 27 H 0.047 0.953 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.117 0.883 31 H 0.084 0.916 32 H 0.059 0.941 33 H 0.038 0.962 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.121 0.879 37 H 0.175 0.825 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.148 0.852 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.242 17.750 -3.052 18.012 hybrid contribution -0.605 -0.393 0.728 1.025 sum -0.363 17.357 -2.324 17.516 Atomic orbital electron populations 1.22678 0.83593 1.02277 0.98357 1.88458 1.17452 1.25723 1.94623 1.23306 0.97257 0.85903 0.98946 1.22213 0.89653 0.99572 0.95216 1.62458 1.57971 1.05557 0.98950 1.20097 0.97559 0.79370 0.97227 1.21036 1.24856 0.94232 1.13069 0.92324 1.24857 0.95314 0.97659 0.96274 1.69959 1.34916 1.11006 1.37792 0.86554 0.79073 0.79956 0.82438 1.19872 1.21299 1.21286 1.20810 0.97198 0.84942 0.98272 1.22652 0.94335 0.88023 0.93345 1.22193 0.99152 0.93179 1.07775 1.20032 0.96781 0.94492 1.01085 1.20280 0.97531 0.92205 0.99216 1.20714 0.99036 0.96018 1.00134 1.20838 0.93930 0.98923 0.98537 1.19909 1.01204 0.88392 1.03014 1.19655 0.91660 0.88724 1.00024 1.83991 1.46952 1.16017 1.62615 0.95283 0.89905 0.95292 0.94438 0.93986 0.88309 0.91635 0.94116 0.96179 0.93339 0.93127 0.87906 0.82459 0.85725 0.85721 0.85197 0.85412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.34 -7.28 7.58 -35.23 -0.27 -7.55 16 3 C 0.02 0.45 5.69 37.15 0.21 0.66 16 4 C 0.06 1.24 5.45 -3.83 -0.02 1.22 16 5 N -0.53 -11.15 4.74 -237.52 -1.13 -12.28 16 6 C 0.18 4.60 4.29 -4.98 -0.02 4.57 16 7 C -0.49 -13.73 8.21 -34.44 -0.28 -14.01 16 8 H 0.06 1.64 6.98 -52.49 -0.37 1.28 16 9 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 10 N -0.90 -26.49 13.29 55.43 0.74 -25.75 16 11 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 12 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 15 C 0.12 2.06 5.11 -4.98 -0.03 2.03 16 16 C 0.06 1.07 5.82 -35.80 -0.21 0.86 16 17 C -0.20 -3.16 11.01 -37.62 -0.41 -3.58 16 18 C -0.12 -1.82 6.40 -105.16 -0.67 -2.49 16 19 C -0.07 -0.90 10.05 -39.69 -0.40 -1.29 16 20 C -0.14 -1.44 9.98 -39.94 -0.40 -1.84 16 21 C -0.10 -1.05 10.01 -39.54 -0.40 -1.45 16 22 C -0.11 -1.29 10.07 -39.46 -0.40 -1.69 16 23 C 0.05 0.71 7.42 -38.47 -0.29 0.42 16 24 O -0.19 -3.21 10.13 3.90 0.04 -3.17 16 25 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 27 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.04 0.74 5.80 -51.93 -0.30 0.43 16 30 H 0.10 2.19 6.33 -51.93 -0.33 1.86 16 31 H 0.07 1.22 7.12 -51.93 -0.37 0.85 16 32 H 0.04 1.11 5.29 -51.93 -0.27 0.83 16 33 H 0.02 0.55 8.05 -51.92 -0.42 0.13 16 34 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 35 H 0.05 0.89 5.71 -51.93 -0.30 0.60 16 36 H 0.10 1.73 8.01 -51.93 -0.42 1.31 16 37 H 0.16 2.21 8.06 -52.49 -0.42 1.78 16 38 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 39 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 40 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 41 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 337.03 15.07 5.08 5.08 Total: -1.00 -31.28 337.03 -8.57 -39.84 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -5.71 Total: 0.33 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: -2.29 Total: -13.40 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: -0.39 Total: -38.03 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: -0.23 Total: -10.72 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.28 -8.57 -39.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610859507.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.706 kcal (2) G-P(sol) polarization free energy of solvation -31.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds