Wall clock time and date at job start Tue Mar 31 2020 07:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 114.00354 * 2 1 4 4 C 1.52994 * 109.47509 * 179.97438 * 3 2 1 5 5 N 1.46901 * 109.47345 * 67.05928 * 4 3 2 6 6 C 1.46901 * 110.99833 * 290.02532 * 5 4 3 7 7 C 1.50694 * 109.47308 * 299.69107 * 6 5 4 8 8 H 1.07996 * 119.99786 * 354.88804 * 7 6 5 9 9 C 1.37873 * 120.00298 * 174.88067 * 7 6 5 10 10 N 1.31514 * 120.00177 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 120.00287 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.46827 * 359.97438 * 11 9 7 13 13 H 1.48493 * 109.47068 * 120.00144 * 11 9 7 14 14 H 1.48502 * 109.47274 * 240.00389 * 11 9 7 15 15 C 1.46901 * 110.99504 * 53.97486 * 5 4 3 16 16 C 1.50698 * 109.47164 * 66.05007 * 15 5 4 17 17 C 1.33996 * 124.92344 * 90.00161 * 16 15 5 18 18 C 1.46790 * 106.18363 * 180.02562 * 17 16 15 19 19 C 1.39401 * 134.36807 * 179.97438 * 18 17 16 20 20 C 1.36731 * 119.71564 * 179.97438 * 19 18 17 21 21 C 1.38748 * 120.41945 * 0.04584 * 20 19 18 22 22 C 1.37847 * 120.68328 * 359.97438 * 21 20 19 23 23 C 1.38948 * 119.81556 * 359.97438 * 22 21 20 24 24 O 1.34452 * 124.92057 * 270.02088 * 16 15 5 25 25 H 1.09006 * 109.46893 * 60.00254 * 1 2 3 26 26 H 1.08992 * 109.47640 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47280 * 300.00772 * 1 2 3 28 28 H 1.09001 * 109.47318 * 59.99810 * 3 2 1 29 29 H 1.08998 * 109.46905 * 299.99983 * 3 2 1 30 30 H 1.09003 * 109.47017 * 307.06251 * 4 3 2 31 31 H 1.08998 * 109.47807 * 187.06294 * 4 3 2 32 32 H 1.09002 * 109.47176 * 59.69859 * 6 5 4 33 33 H 1.09009 * 109.46894 * 179.69666 * 6 5 4 34 34 H 0.96992 * 120.00649 * 179.97438 * 10 9 7 35 35 H 1.08999 * 109.47406 * 306.04635 * 15 5 4 36 36 H 1.09003 * 109.46960 * 186.04899 * 15 5 4 37 37 H 1.07993 * 126.90631 * 0.02562 * 17 16 15 38 38 H 1.07997 * 120.14113 * 0.02562 * 19 18 17 39 39 H 1.08005 * 119.79396 * 180.02562 * 20 19 18 40 40 H 1.07996 * 119.65831 * 180.02562 * 21 20 19 41 41 H 1.07996 * 120.09232 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9815 0.6076 -1.2745 6 6 3.6013 -0.8079 -1.3734 7 6 4.2433 -1.5802 -0.2498 8 1 4.9360 -1.0881 0.4168 9 6 3.9464 -2.9149 -0.0728 10 7 3.1032 -3.5143 -0.8849 11 14 4.7416 -3.8720 1.3204 12 1 5.6452 -2.9748 2.0845 13 1 3.6874 -4.3996 2.2233 14 1 5.5250 -5.0024 0.7603 15 6 3.4559 1.3745 -2.4118 16 6 4.0626 2.7540 -2.4108 17 6 5.1977 3.0932 -3.0370 18 6 5.4030 4.5213 -2.7665 19 6 6.3782 5.4509 -3.1247 20 6 6.2718 6.7445 -2.6948 21 6 5.2009 7.1363 -1.9044 22 6 4.2274 6.2311 -1.5399 23 6 4.3159 4.9118 -1.9670 24 8 3.5437 3.8226 -1.7812 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5140 0.8899 28 1 1.6887 1.8464 0.8900 29 1 1.6887 1.8463 -0.8900 30 1 3.8484 0.5386 0.8210 31 1 3.9782 2.1726 0.1270 32 1 2.5173 -0.8987 -1.3038 33 1 3.9390 -1.2089 -2.3292 34 1 2.8945 -4.4533 -0.7607 35 1 2.3722 1.4542 -2.3266 36 1 3.7108 0.8662 -3.3417 37 1 5.8335 2.4461 -3.6227 38 1 7.2135 5.1508 -3.7399 39 1 7.0264 7.4658 -2.9719 40 1 5.1289 8.1614 -1.5721 41 1 3.3982 6.5463 -0.9240 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610859507.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:31 Heat of formation + Delta-G solvation = -17.468721 kcal Electronic energy + Delta-G solvation = -23106.078824 eV Core-core repulsion = 19759.476841 eV Total energy + Delta-G solvation = -3346.601983 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.40771 -39.82204 -38.72445 -37.38752 -34.70387 -33.78379 -31.44205 -31.30504 -30.60308 -28.61530 -27.25584 -26.27081 -24.42602 -23.81921 -22.80312 -22.22216 -21.06834 -18.48009 -18.28666 -17.76664 -17.62473 -17.32947 -17.05803 -16.58971 -16.26819 -15.85028 -15.50611 -15.24078 -15.05267 -14.66353 -14.17403 -13.96482 -13.68989 -13.55841 -13.21266 -13.15445 -12.98107 -12.87622 -12.62281 -12.60233 -12.48211 -12.46398 -11.89130 -11.80891 -11.77504 -11.20885 -10.99909 -10.59384 -10.34055 -9.54625 -9.10000 -8.87011 -8.06947 -6.11251 -0.00720 0.44806 1.38082 1.42496 1.43619 1.55487 1.74810 2.47826 2.82318 2.97563 3.27758 3.36377 3.49960 3.77880 4.04012 4.10399 4.15690 4.21545 4.26458 4.35140 4.42683 4.44817 4.50348 4.53491 4.57194 4.62675 4.71427 4.83599 4.84971 4.98958 5.08284 5.29488 5.37977 5.39335 5.52768 5.55329 5.69429 5.73566 5.82841 6.14456 6.25432 6.32960 6.41382 6.65853 7.01976 7.53849 9.04498 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021823 B = 0.004090 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.744357 B = 6843.625908 C = 7482.808199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.386 6.386 3 C 0.031 3.969 4 C 0.067 3.933 5 N -0.534 5.534 6 C 0.197 3.803 7 C -0.503 4.503 8 H 0.051 0.949 9 C 0.010 3.990 10 N -0.929 5.929 11 Si 0.955 3.045 12 H -0.269 1.269 13 H -0.282 1.282 14 H -0.281 1.281 15 C 0.123 3.877 16 C 0.042 3.958 17 C -0.201 4.201 18 C -0.150 4.150 19 C -0.084 4.084 20 C -0.134 4.134 21 C -0.090 4.090 22 C -0.120 4.120 23 C 0.021 3.979 24 O -0.207 6.207 25 H 0.044 0.956 26 H 0.075 0.925 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.026 0.974 33 H -0.006 1.006 34 H 0.259 0.741 35 H 0.051 0.949 36 H 0.105 0.895 37 H 0.165 0.835 38 H 0.142 0.858 39 H 0.161 0.839 40 H 0.169 0.831 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.737 20.823 -2.623 21.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.305 6.305 3 C -0.047 4.047 4 C -0.061 4.061 5 N -0.258 5.258 6 C 0.073 3.927 7 C -0.542 4.542 8 H 0.069 0.931 9 C -0.188 4.188 10 N -0.570 5.570 11 Si 0.781 3.219 12 H -0.193 1.193 13 H -0.209 1.209 14 H -0.207 1.207 15 C -0.004 4.004 16 C -0.005 4.005 17 C -0.221 4.221 18 C -0.151 4.151 19 C -0.102 4.102 20 C -0.152 4.152 21 C -0.108 4.108 22 C -0.138 4.138 23 C -0.026 4.026 24 O -0.110 6.110 25 H 0.063 0.937 26 H 0.094 0.906 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.043 0.957 33 H 0.012 0.988 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.123 0.877 37 H 0.182 0.818 38 H 0.160 0.840 39 H 0.178 0.822 40 H 0.186 0.814 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.044 20.496 -2.516 20.676 hybrid contribution -0.809 -1.029 0.522 1.409 sum 0.235 19.466 -1.994 19.570 Atomic orbital electron populations 1.22804 0.81539 1.02506 1.00256 1.88370 1.19895 1.27324 1.94957 1.23243 0.95866 0.85273 1.00326 1.22102 0.91185 0.99224 0.93587 1.62284 1.58779 1.04028 1.00704 1.19700 0.96230 0.81759 0.95056 1.21289 1.24632 0.94780 1.13450 0.93069 1.25631 0.95878 0.98653 0.98619 1.70073 1.36179 1.11331 1.39394 0.85554 0.78247 0.78541 0.79536 1.19337 1.20853 1.20669 1.20670 0.97189 0.85624 0.96942 1.22251 0.95232 0.87703 0.95361 1.22435 0.98570 0.94252 1.06870 1.20251 0.98094 0.94356 1.02380 1.20632 0.97419 0.92674 0.99479 1.21201 0.99541 0.95764 0.98704 1.21379 0.92521 1.00197 0.96709 1.20331 1.02591 0.87446 1.03460 1.20196 0.91922 0.89382 1.01109 1.83917 1.47611 1.16423 1.63047 0.93740 0.90602 0.92899 0.92272 0.93106 0.91018 0.90339 0.95655 0.98789 0.93228 0.93104 0.87656 0.81771 0.84025 0.82166 0.81357 0.83726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 11.01 113.37 1.25 2.08 16 2 O -0.39 -16.57 7.58 -148.98 -1.13 -17.70 16 3 C 0.03 1.13 5.69 71.98 0.41 1.54 16 4 C 0.07 2.75 5.45 86.30 0.47 3.22 16 5 N -0.53 -23.45 4.74 -905.36 -4.29 -27.74 16 6 C 0.20 10.45 4.29 85.55 0.37 10.81 16 7 C -0.50 -28.81 8.21 25.60 0.21 -28.60 16 8 H 0.05 2.94 6.98 -2.91 -0.02 2.92 16 9 C 0.01 0.57 5.46 84.65 0.46 1.03 16 10 N -0.93 -56.12 13.29 21.45 0.28 -55.83 16 11 Si 0.95 45.58 29.54 68.60 2.03 47.61 16 12 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 13 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 14 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 15 C 0.12 4.54 5.11 85.56 0.44 4.98 16 16 C 0.04 1.43 5.82 24.72 0.14 1.57 16 17 C -0.20 -6.33 11.01 23.54 0.26 -6.07 16 18 C -0.15 -4.31 6.40 -20.21 -0.13 -4.44 16 19 C -0.08 -1.83 10.05 22.20 0.22 -1.61 16 20 C -0.13 -2.21 9.98 22.04 0.22 -1.99 16 21 C -0.09 -1.46 10.01 22.30 0.22 -1.23 16 22 C -0.12 -2.61 10.07 22.35 0.23 -2.39 16 23 C 0.02 0.61 7.42 22.99 0.17 0.78 16 24 O -0.21 -6.89 10.13 -8.96 -0.09 -6.98 16 25 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 26 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 27 H 0.05 1.46 8.14 -2.38 -0.02 1.45 16 28 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.05 1.77 5.80 -2.39 -0.01 1.76 16 30 H 0.07 3.29 6.33 -2.39 -0.02 3.27 16 31 H 0.08 2.96 7.12 -2.39 -0.02 2.94 16 32 H 0.03 1.45 5.29 -2.39 -0.01 1.44 16 33 H -0.01 -0.34 8.05 -2.38 -0.02 -0.36 16 34 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 35 H 0.05 1.85 5.71 -2.39 -0.01 1.84 16 36 H 0.11 3.72 8.01 -2.39 -0.02 3.70 16 37 H 0.16 4.69 8.06 -2.91 -0.02 4.66 16 38 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 39 H 0.16 1.50 8.06 -2.91 -0.02 1.48 16 40 H 0.17 1.42 8.06 -2.91 -0.02 1.39 16 41 H 0.14 2.54 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -69.18 337.03 2.77 -66.41 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 1.02 Total: 14.55 kcal Atomic # 6 Polarization: -25.26 SS G_CDS: 4.94 Total: -20.32 kcal Atomic # 7 Polarization: -79.57 SS G_CDS: -4.01 Total: -83.57 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -1.22 Total: -24.68 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -69.18 2.77 -66.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610859507.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.946 kcal (2) G-P(sol) polarization free energy of solvation -69.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds