Wall clock time and date at job start Tue Mar 31 2020 07:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 113.99990 * 2 1 4 4 C 1.53004 * 109.47196 * 179.97438 * 3 2 1 5 5 H 1.09010 * 109.86660 * 53.98718 * 4 3 2 6 6 C 1.54315 * 109.88163 * 174.99724 * 4 3 2 7 7 C 1.55164 * 102.93892 * 141.61388 * 6 4 3 8 8 C 1.54906 * 101.58127 * 324.49911 * 7 6 4 9 9 N 1.47023 * 109.88417 * 292.81405 * 4 3 2 10 10 C 1.34771 * 125.65295 * 61.68254 * 9 4 3 11 11 O 1.21596 * 119.99830 * 357.19088 * 10 9 4 12 12 C 1.47635 * 120.00577 * 177.18748 * 10 9 4 13 13 C 1.40007 * 119.90230 * 205.94473 * 12 10 9 14 14 C 1.36321 * 120.10915 * 179.71786 * 13 12 10 15 15 C 1.40887 * 119.88885 * 0.53098 * 14 13 12 16 16 C 1.41108 * 120.10115 * 179.72280 * 15 14 13 17 17 H 1.07999 * 119.99935 * 205.35920 * 16 15 14 18 18 C 1.40233 * 120.00072 * 25.35495 * 16 15 14 19 19 N 1.30642 * 119.99911 * 16.63060 * 18 16 15 20 20 Si 1.86796 * 119.99914 * 196.63309 * 18 16 15 21 21 H 1.48498 * 109.47487 * 90.00032 * 20 18 16 22 22 H 1.48503 * 109.47089 * 210.00174 * 20 18 16 23 23 H 1.48506 * 109.47022 * 329.99803 * 20 18 16 24 24 C 1.40884 * 119.79297 * 359.73766 * 15 14 13 25 25 C 1.36315 * 119.89275 * 0.02562 * 24 15 14 26 26 H 1.08996 * 109.47130 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47041 * 300.00195 * 1 2 3 28 28 H 1.08997 * 109.46826 * 60.00154 * 1 2 3 29 29 H 1.09001 * 109.46857 * 60.00180 * 3 2 1 30 30 H 1.08990 * 109.47286 * 300.00219 * 3 2 1 31 31 H 1.09006 * 110.72319 * 23.25479 * 6 4 3 32 32 H 1.08998 * 110.87850 * 260.05001 * 6 4 3 33 33 H 1.08997 * 111.00325 * 82.57476 * 7 6 4 34 34 H 1.09004 * 111.00194 * 206.42609 * 7 6 4 35 35 H 1.09000 * 110.36436 * 155.84895 * 8 7 6 36 36 H 1.09004 * 110.36595 * 278.17088 * 8 7 6 37 37 H 1.08003 * 119.94110 * 359.97438 * 13 12 10 38 38 H 1.08000 * 120.05294 * 180.24998 * 14 13 12 39 39 H 0.96998 * 120.00196 * 179.97438 * 19 18 16 40 40 H 1.08007 * 120.04875 * 179.97438 * 24 15 14 41 41 H 1.08005 * 119.93954 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.8576 0.5544 -0.8284 6 6 4.1728 2.5844 -0.1259 7 6 5.4019 2.4930 0.8167 8 6 4.8557 1.5938 1.9537 9 7 3.9912 0.6110 1.2754 10 6 3.6722 -0.6111 1.7454 11 8 2.9072 -1.3216 1.1221 12 6 4.2515 -1.0873 3.0171 13 6 4.3897 -2.4609 3.2500 14 6 4.9293 -2.9052 4.4204 15 6 5.3379 -1.9798 5.4010 16 6 5.8917 -2.4349 6.6165 17 1 5.8287 -1.8202 7.5023 18 6 6.5237 -3.6854 6.6744 19 7 6.8911 -4.2832 5.5724 20 14 6.8400 -4.4963 8.3272 21 1 5.6774 -5.3446 8.6931 22 1 8.0596 -5.3391 8.2396 23 1 7.0348 -3.4499 9.3628 24 6 5.1916 -0.5987 5.1644 25 6 4.6553 -0.1639 3.9890 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8464 -0.8899 31 1 3.4817 3.3552 0.2153 32 1 4.4870 2.7768 -1.1517 33 1 6.2451 2.0188 0.3145 34 1 5.6779 3.4772 1.1954 35 1 5.6753 1.0889 2.4650 36 1 4.2745 2.1866 2.6601 37 1 4.0721 -3.1696 2.4995 38 1 5.0393 -3.9649 4.5975 39 1 7.3286 -5.1480 5.6125 40 1 5.5030 0.1143 5.9135 41 1 4.5424 0.8947 3.8070 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611152604.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:55 Heat of formation + Delta-G solvation = -51.322215 kcal Electronic energy + Delta-G solvation = -23154.297348 eV Core-core repulsion = 19806.227368 eV Total energy + Delta-G solvation = -3348.069980 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.81994 -37.74499 -36.87524 -36.38231 -33.82086 -31.55345 -30.58272 -29.87081 -29.17458 -26.58970 -25.85482 -24.71607 -22.84186 -21.53760 -21.01725 -20.27860 -18.64838 -17.46360 -16.61220 -16.36682 -15.97674 -15.32894 -15.15637 -15.03329 -14.24136 -13.88655 -13.80381 -13.34935 -13.04456 -12.85969 -12.73970 -12.57874 -12.16394 -12.09716 -11.75095 -11.62362 -11.32782 -11.22328 -11.18069 -10.96921 -10.89865 -10.84385 -10.68815 -10.49081 -9.87931 -9.42255 -9.32142 -9.27611 -8.69098 -8.05844 -7.59500 -7.45117 -6.92317 -4.51847 2.39442 2.97849 3.01198 3.02879 3.09322 3.59658 3.80847 3.95056 4.00992 4.56699 4.62683 4.81223 4.94580 5.24077 5.28015 5.39369 5.48094 5.51898 5.54145 5.63023 5.67422 5.67760 5.82874 5.91172 5.94507 6.00992 6.12669 6.20154 6.26106 6.35642 6.83729 6.89680 6.96674 7.14888 7.20597 7.51954 7.52841 7.70808 7.91462 7.96366 8.13757 8.34509 8.51704 8.72305 8.84510 9.26199 9.99796 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.025932 B = 0.003931 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.495141 B = 7121.804507 C = 7770.206701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.343 6.343 3 C 0.051 3.949 4 C 0.141 3.859 5 H 0.076 0.924 6 C -0.124 4.124 7 C -0.136 4.136 8 C 0.098 3.902 9 N -0.621 5.621 10 C 0.580 3.420 11 O -0.527 6.527 12 C -0.270 4.270 13 C -0.041 4.041 14 C -0.179 4.179 15 C 0.126 3.874 16 C -0.450 4.450 17 H 0.082 0.918 18 C 0.075 3.925 19 N -0.776 5.776 20 Si 0.912 3.088 21 H -0.265 1.265 22 H -0.276 1.276 23 H -0.260 1.260 24 C -0.236 4.236 25 C -0.067 4.067 26 H 0.082 0.918 27 H 0.032 0.968 28 H 0.029 0.971 29 H 0.044 0.956 30 H 0.046 0.954 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.062 0.938 37 H 0.096 0.904 38 H 0.120 0.880 39 H 0.285 0.715 40 H 0.095 0.905 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.513 11.245 -7.218 13.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.260 6.260 3 C -0.028 4.028 4 C 0.036 3.964 5 H 0.094 0.906 6 C -0.162 4.162 7 C -0.174 4.174 8 C -0.025 4.025 9 N -0.358 5.358 10 C 0.374 3.626 11 O -0.403 6.403 12 C -0.274 4.274 13 C -0.060 4.060 14 C -0.198 4.198 15 C 0.123 3.877 16 C -0.478 4.478 17 H 0.100 0.900 18 C -0.146 4.146 19 N -0.400 5.400 20 Si 0.736 3.264 21 H -0.190 1.190 22 H -0.201 1.201 23 H -0.184 1.184 24 C -0.256 4.256 25 C -0.086 4.086 26 H 0.100 0.900 27 H 0.051 0.949 28 H 0.048 0.952 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.109 0.891 36 H 0.080 0.920 37 H 0.114 0.886 38 H 0.138 0.862 39 H 0.096 0.904 40 H 0.113 0.887 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.709 10.363 -7.610 13.382 hybrid contribution -0.002 -0.054 0.731 0.733 sum -3.711 10.309 -6.879 12.937 Atomic orbital electron populations 1.22659 0.82974 1.02347 0.98557 1.88441 1.17684 1.24971 1.94898 1.22930 0.94108 0.86478 0.99238 1.21411 0.91922 0.94298 0.88719 0.90605 1.22592 0.97556 0.95344 1.00741 1.22849 0.97548 1.00258 0.96707 1.22586 0.94603 0.90459 0.94830 1.48453 1.51072 1.15974 1.20325 1.18393 0.80130 0.78662 0.85368 1.90744 1.34943 1.54267 1.60394 1.18925 1.18485 0.94276 0.95722 1.20435 0.95898 0.93133 0.96573 1.21010 1.04025 0.99970 0.94777 1.17768 0.86736 0.90884 0.92270 1.19787 1.30363 1.01010 0.96620 0.89954 1.26059 0.93356 0.96716 0.98453 1.69743 1.26416 1.14482 1.29317 0.86238 0.78664 0.79641 0.81834 1.19021 1.20097 1.18408 1.20688 1.11414 0.95414 0.98066 1.20891 0.96367 0.97321 0.94010 0.89952 0.94949 0.95240 0.93797 0.93590 0.90702 0.90144 0.90528 0.90063 0.89129 0.91973 0.88555 0.86194 0.90361 0.88691 0.87860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.56 16 2 O -0.34 -6.19 7.33 -59.47 -0.44 -6.62 16 3 C 0.05 0.73 5.35 37.16 0.20 0.93 16 4 C 0.14 2.05 3.31 -66.95 -0.22 1.83 16 5 H 0.08 1.20 8.14 -51.92 -0.42 0.77 16 6 C -0.12 -1.25 6.48 -24.90 -0.16 -1.41 16 7 C -0.14 -1.42 7.09 -24.58 -0.17 -1.59 16 8 C 0.10 1.40 5.00 -2.53 -0.01 1.39 16 9 N -0.62 -11.02 3.06 -164.19 -0.50 -11.52 16 10 C 0.58 12.97 7.43 -12.43 -0.09 12.88 16 11 O -0.53 -13.11 13.79 -18.96 -0.26 -13.37 16 12 C -0.27 -6.38 5.73 -104.73 -0.60 -6.98 16 13 C -0.04 -1.04 9.52 -39.61 -0.38 -1.41 16 14 C -0.18 -4.69 8.63 -39.27 -0.34 -5.02 16 15 C 0.13 3.29 5.57 -106.81 -0.60 2.70 16 16 C -0.45 -11.46 9.05 -37.74 -0.34 -11.80 16 17 H 0.08 1.99 7.90 -52.49 -0.41 1.58 16 18 C 0.07 1.80 5.16 -17.31 -0.09 1.71 16 19 N -0.78 -19.40 10.93 55.56 0.61 -18.79 16 20 Si 0.91 17.86 29.59 -169.99 -5.03 12.82 16 21 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 22 H -0.28 -5.28 7.11 56.52 0.40 -4.88 16 23 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 24 C -0.24 -5.59 9.73 -39.27 -0.38 -5.97 16 25 C -0.07 -1.48 7.87 -39.61 -0.31 -1.79 16 26 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.65 7.85 -51.93 -0.41 0.25 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.09 1.43 6.17 -51.93 -0.32 1.11 16 36 H 0.06 0.83 7.24 -51.93 -0.38 0.45 16 37 H 0.10 2.39 7.85 -52.48 -0.41 1.98 16 38 H 0.12 3.22 6.16 -52.49 -0.32 2.90 16 39 H 0.29 6.45 8.29 -40.82 -0.34 6.11 16 40 H 0.09 2.06 8.06 -52.48 -0.42 1.64 16 41 H 0.10 1.92 4.45 -52.48 -0.23 1.68 16 LS Contribution 330.18 15.07 4.98 4.98 Total: -1.00 -30.57 330.18 -8.88 -39.46 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -5.85 Total: 6.03 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: -2.39 Total: -12.98 kcal Atomic # 7 Polarization: -30.42 SS G_CDS: 0.10 Total: -30.32 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -0.70 Total: -19.99 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.03 Total: 12.82 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.57 -8.88 -39.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611152604.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.864 kcal (2) G-P(sol) polarization free energy of solvation -30.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds