Wall clock time and date at job start Tue Mar 31 2020 07:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 113.99990 * 2 1 4 4 C 1.53004 * 109.47196 * 179.97438 * 3 2 1 5 5 H 1.09010 * 109.86660 * 53.98718 * 4 3 2 6 6 C 1.54315 * 109.88163 * 174.99724 * 4 3 2 7 7 C 1.55164 * 102.93892 * 141.61388 * 6 4 3 8 8 C 1.54906 * 101.58127 * 324.49911 * 7 6 4 9 9 N 1.47023 * 109.88417 * 292.81405 * 4 3 2 10 10 C 1.34771 * 125.65295 * 61.68254 * 9 4 3 11 11 O 1.21596 * 119.99830 * 357.19088 * 10 9 4 12 12 C 1.47635 * 120.00577 * 177.18748 * 10 9 4 13 13 C 1.40007 * 119.90230 * 205.94473 * 12 10 9 14 14 C 1.36321 * 120.10915 * 179.71786 * 13 12 10 15 15 C 1.40887 * 119.88885 * 0.53098 * 14 13 12 16 16 C 1.41108 * 120.10115 * 179.72280 * 15 14 13 17 17 H 1.07999 * 119.99935 * 205.35920 * 16 15 14 18 18 C 1.40233 * 120.00072 * 25.35495 * 16 15 14 19 19 N 1.30642 * 119.99911 * 16.63060 * 18 16 15 20 20 Si 1.86796 * 119.99914 * 196.63309 * 18 16 15 21 21 H 1.48498 * 109.47487 * 90.00032 * 20 18 16 22 22 H 1.48503 * 109.47089 * 210.00174 * 20 18 16 23 23 H 1.48506 * 109.47022 * 329.99803 * 20 18 16 24 24 C 1.40884 * 119.79297 * 359.73766 * 15 14 13 25 25 C 1.36315 * 119.89275 * 0.02562 * 24 15 14 26 26 H 1.08996 * 109.47130 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47041 * 300.00195 * 1 2 3 28 28 H 1.08997 * 109.46826 * 60.00154 * 1 2 3 29 29 H 1.09001 * 109.46857 * 60.00180 * 3 2 1 30 30 H 1.08990 * 109.47286 * 300.00219 * 3 2 1 31 31 H 1.09006 * 110.72319 * 23.25479 * 6 4 3 32 32 H 1.08998 * 110.87850 * 260.05001 * 6 4 3 33 33 H 1.08997 * 111.00325 * 82.57476 * 7 6 4 34 34 H 1.09004 * 111.00194 * 206.42609 * 7 6 4 35 35 H 1.09000 * 110.36436 * 155.84895 * 8 7 6 36 36 H 1.09004 * 110.36595 * 278.17088 * 8 7 6 37 37 H 1.08003 * 119.94110 * 359.97438 * 13 12 10 38 38 H 1.08000 * 120.05294 * 180.24998 * 14 13 12 39 39 H 0.96998 * 120.00196 * 179.97438 * 19 18 16 40 40 H 1.08007 * 120.04875 * 179.97438 * 24 15 14 41 41 H 1.08005 * 119.93954 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.8576 0.5544 -0.8284 6 6 4.1728 2.5844 -0.1259 7 6 5.4019 2.4930 0.8167 8 6 4.8557 1.5938 1.9537 9 7 3.9912 0.6110 1.2754 10 6 3.6722 -0.6111 1.7454 11 8 2.9072 -1.3216 1.1221 12 6 4.2515 -1.0873 3.0171 13 6 4.3897 -2.4609 3.2500 14 6 4.9293 -2.9052 4.4204 15 6 5.3379 -1.9798 5.4010 16 6 5.8917 -2.4349 6.6165 17 1 5.8287 -1.8202 7.5023 18 6 6.5237 -3.6854 6.6744 19 7 6.8911 -4.2832 5.5724 20 14 6.8400 -4.4963 8.3272 21 1 5.6774 -5.3446 8.6931 22 1 8.0596 -5.3391 8.2396 23 1 7.0348 -3.4499 9.3628 24 6 5.1916 -0.5987 5.1644 25 6 4.6553 -0.1639 3.9890 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8464 -0.8899 31 1 3.4817 3.3552 0.2153 32 1 4.4870 2.7768 -1.1517 33 1 6.2451 2.0188 0.3145 34 1 5.6779 3.4772 1.1954 35 1 5.6753 1.0889 2.4650 36 1 4.2745 2.1866 2.6601 37 1 4.0721 -3.1696 2.4995 38 1 5.0393 -3.9649 4.5975 39 1 7.3286 -5.1480 5.6125 40 1 5.5030 0.1143 5.9135 41 1 4.5424 0.8947 3.8070 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611152604.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:54 Heat of formation + Delta-G solvation = -68.314837 kcal Electronic energy + Delta-G solvation = -23155.034204 eV Core-core repulsion = 19806.227368 eV Total energy + Delta-G solvation = -3348.806836 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.23081 -39.36550 -38.31756 -37.84910 -35.66526 -32.98222 -31.78767 -31.68175 -30.87658 -27.68560 -27.66712 -25.87747 -24.32524 -23.03301 -22.62206 -21.67765 -20.12716 -19.32651 -18.02403 -17.72229 -17.18902 -17.07402 -16.54743 -16.26302 -15.83256 -15.38382 -15.26129 -14.85773 -14.56223 -14.31726 -13.99169 -13.83578 -13.77757 -13.59237 -13.27413 -13.18689 -12.85390 -12.69614 -12.57370 -12.35504 -12.13256 -12.02932 -11.94901 -11.66264 -11.55378 -11.23587 -11.11294 -10.49606 -10.41785 -9.59886 -9.44072 -9.32616 -8.74761 -6.45779 0.54825 1.15305 1.38114 1.44735 1.52978 2.15454 2.20037 2.25143 2.79589 2.95182 3.63281 3.69710 3.78866 4.02893 4.21478 4.22876 4.24495 4.36074 4.40506 4.46368 4.47913 4.52731 4.62873 4.65996 4.81961 4.88910 4.95291 4.99101 5.03918 5.07276 5.14551 5.22779 5.29205 5.37061 5.60070 5.63141 5.82331 6.02001 6.05777 6.22617 6.43763 6.58078 6.77029 6.80183 6.92550 7.58734 8.20419 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.025932 B = 0.003931 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.495141 B = 7121.804507 C = 7770.206701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.388 6.388 3 C 0.047 3.953 4 C 0.129 3.871 5 H 0.056 0.944 6 C -0.109 4.109 7 C -0.124 4.124 8 C 0.085 3.915 9 N -0.620 5.620 10 C 0.573 3.427 11 O -0.563 6.563 12 C -0.281 4.281 13 C -0.056 4.056 14 C -0.199 4.199 15 C 0.099 3.901 16 C -0.479 4.479 17 H 0.090 0.910 18 C 0.034 3.966 19 N -0.810 5.810 20 Si 0.989 3.011 21 H -0.264 1.264 22 H -0.267 1.267 23 H -0.251 1.251 24 C -0.246 4.246 25 C -0.054 4.054 26 H 0.073 0.927 27 H 0.036 0.964 28 H 0.058 0.942 29 H 0.045 0.955 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.106 0.894 33 H 0.073 0.927 34 H 0.116 0.884 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.103 0.897 39 H 0.293 0.707 40 H 0.115 0.885 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.181 14.274 -7.108 16.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.306 6.306 3 C -0.030 4.030 4 C 0.026 3.974 5 H 0.075 0.925 6 C -0.147 4.147 7 C -0.162 4.162 8 C -0.037 4.037 9 N -0.354 5.354 10 C 0.367 3.633 11 O -0.443 6.443 12 C -0.285 4.285 13 C -0.075 4.075 14 C -0.219 4.219 15 C 0.096 3.904 16 C -0.506 4.506 17 H 0.108 0.892 18 C -0.184 4.184 19 N -0.434 5.434 20 Si 0.808 3.192 21 H -0.188 1.188 22 H -0.191 1.191 23 H -0.174 1.174 24 C -0.265 4.265 25 C -0.072 4.072 26 H 0.092 0.908 27 H 0.054 0.946 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.098 0.902 31 H 0.116 0.884 32 H 0.125 0.875 33 H 0.092 0.908 34 H 0.134 0.866 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.121 0.879 39 H 0.104 0.896 40 H 0.133 0.867 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -3.364 13.453 -7.523 15.777 hybrid contribution -0.122 -0.936 0.582 1.109 sum -3.487 12.517 -6.941 14.731 Atomic orbital electron populations 1.22755 0.81508 1.02400 1.00094 1.88387 1.19621 1.27398 1.95238 1.23093 0.93620 0.85473 1.00820 1.21796 0.92740 0.96575 0.86300 0.92537 1.22626 0.97179 0.92514 1.02345 1.22840 0.97401 1.00865 0.95066 1.22845 0.93862 0.90315 0.96691 1.48415 1.50533 1.14944 1.21556 1.18199 0.80014 0.80209 0.84910 1.90719 1.36559 1.55896 1.61113 1.19240 1.18143 0.93887 0.97259 1.20490 0.96486 0.94322 0.96219 1.20920 1.05742 0.99420 0.95771 1.18127 0.87477 0.92095 0.92699 1.20099 1.31308 1.02487 0.96738 0.89206 1.26986 0.92419 0.96677 1.02297 1.69803 1.26776 1.15108 1.31680 0.85097 0.78658 0.78590 0.76806 1.18829 1.19112 1.17420 1.20965 1.11561 0.94839 0.99156 1.21214 0.94433 0.98957 0.92581 0.90833 0.94577 0.92344 0.93659 0.90212 0.88366 0.87536 0.90849 0.86556 0.90998 0.90167 0.89627 0.87919 0.89566 0.86688 0.84029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 11.01 113.37 1.25 2.04 16 2 O -0.39 -13.95 7.33 -125.80 -0.92 -14.87 16 3 C 0.05 1.27 5.35 71.98 0.39 1.65 16 4 C 0.13 3.52 3.31 45.34 0.15 3.67 16 5 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 6 C -0.11 -1.69 6.48 31.78 0.21 -1.49 16 7 C -0.12 -2.07 7.09 31.99 0.23 -1.85 16 8 C 0.08 2.20 5.00 86.85 0.43 2.63 16 9 N -0.62 -21.34 3.06 -791.65 -2.43 -23.77 16 10 C 0.57 26.15 7.43 86.73 0.64 26.79 16 11 O -0.56 -29.10 13.79 19.16 0.26 -28.84 16 12 C -0.28 -13.65 5.73 -19.94 -0.11 -13.77 16 13 C -0.06 -2.98 9.52 22.25 0.21 -2.77 16 14 C -0.20 -11.04 8.63 22.47 0.19 -10.85 16 15 C 0.10 5.32 5.57 -21.28 -0.12 5.20 16 16 C -0.48 -24.84 9.05 23.46 0.21 -24.63 16 17 H 0.09 4.37 7.90 -2.91 -0.02 4.34 16 18 C 0.03 1.65 5.16 85.35 0.44 2.09 16 19 N -0.81 -41.73 10.93 21.87 0.24 -41.49 16 20 Si 0.99 36.52 29.59 68.60 2.03 38.55 16 21 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 22 H -0.27 -9.37 7.11 99.48 0.71 -8.66 16 23 H -0.25 -8.82 7.11 99.48 0.71 -8.12 16 24 C -0.25 -11.64 9.73 22.47 0.22 -11.42 16 25 C -0.05 -2.34 7.87 22.25 0.18 -2.16 16 26 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.10 1.14 7.85 -2.38 -0.02 1.13 16 32 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.07 2.15 6.17 -2.39 -0.01 2.14 16 36 H 0.08 1.82 7.24 -2.38 -0.02 1.80 16 37 H 0.09 4.61 7.85 -2.91 -0.02 4.59 16 38 H 0.10 5.92 6.16 -2.91 -0.02 5.90 16 39 H 0.29 13.59 8.29 -92.71 -0.77 12.82 16 40 H 0.12 4.88 8.06 -2.91 -0.02 4.85 16 41 H 0.14 4.96 4.45 -2.91 -0.01 4.94 16 Total: -1.00 -70.90 330.18 4.72 -66.17 By element: Atomic # 1 Polarization: 28.08 SS G_CDS: 1.03 Total: 29.10 kcal Atomic # 6 Polarization: -29.37 SS G_CDS: 4.51 Total: -24.85 kcal Atomic # 7 Polarization: -63.07 SS G_CDS: -2.19 Total: -65.26 kcal Atomic # 8 Polarization: -43.05 SS G_CDS: -0.66 Total: -43.71 kcal Atomic # 14 Polarization: 36.52 SS G_CDS: 2.03 Total: 38.55 kcal Total: -70.90 4.72 -66.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611152604.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.144 kcal (2) G-P(sol) polarization free energy of solvation -70.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds