Wall clock time and date at job start Tue Mar 31 2020 06:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35896 * 117.00148 * 2 1 4 4 C 1.38757 * 120.05769 * 0.25282 * 3 2 1 5 5 C 1.38124 * 119.94455 * 180.27567 * 4 3 2 6 6 C 1.38290 * 120.05467 * 359.72296 * 5 4 3 7 7 C 1.38238 * 120.11365 * 0.02638 * 6 5 4 8 8 C 1.38169 * 120.05654 * 359.97262 * 7 6 5 9 9 C 1.50702 * 120.03196 * 179.97438 * 8 7 6 10 10 H 1.08997 * 109.58705 * 211.79228 * 9 8 7 11 11 C 1.53197 * 109.70274 * 332.14870 * 9 8 7 12 12 C 1.53038 * 109.31506 * 174.49052 * 11 9 8 13 13 C 1.53044 * 109.53658 * 298.63319 * 12 11 9 14 14 C 1.53197 * 109.31232 * 61.36179 * 13 12 11 15 15 N 1.46921 * 109.58516 * 91.50166 * 9 8 7 16 16 C 1.34782 * 120.63211 * 6.44812 * 15 9 8 17 17 O 1.21685 * 119.99724 * 5.31504 * 16 15 9 18 18 C 1.46372 * 120.00043 * 185.31920 * 16 15 9 19 19 H 1.07995 * 120.00461 * 335.66365 * 18 16 15 20 20 C 1.40054 * 119.99924 * 155.66061 * 18 16 15 21 21 N 1.30667 * 119.99957 * 173.28713 * 20 18 16 22 22 Si 1.86800 * 119.99685 * 353.29255 * 20 18 16 23 23 H 1.48501 * 109.47167 * 93.84937 * 22 20 18 24 24 H 1.48502 * 109.46923 * 213.84081 * 22 20 18 25 25 H 1.48497 * 109.47433 * 333.84272 * 22 20 18 26 26 H 1.08999 * 109.47292 * 300.00377 * 1 2 3 27 27 H 1.09008 * 109.46860 * 59.99707 * 1 2 3 28 28 H 1.08999 * 109.47269 * 179.97438 * 1 2 3 29 29 H 1.07999 * 120.02891 * 0.02562 * 4 3 2 30 30 H 1.07992 * 119.97176 * 179.75212 * 5 4 3 31 31 H 1.07999 * 119.94193 * 180.02562 * 6 5 4 32 32 H 1.08000 * 119.97448 * 179.97438 * 7 6 5 33 33 H 1.09007 * 109.49298 * 294.44198 * 11 9 8 34 34 H 1.09001 * 109.49778 * 54.53332 * 11 9 8 35 35 H 1.08997 * 109.46424 * 178.61232 * 12 11 9 36 36 H 1.08999 * 109.44736 * 58.64326 * 12 11 9 37 37 H 1.08995 * 109.49545 * 301.41544 * 13 12 11 38 38 H 1.09001 * 109.49880 * 181.31578 * 13 12 11 39 39 H 1.08998 * 109.58694 * 185.57632 * 14 13 12 40 40 H 1.08998 * 109.58333 * 65.15204 * 14 13 12 41 41 H 0.97003 * 119.99552 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2914 2.3753 0.0053 5 6 1.9209 3.6048 -0.0005 6 6 3.3020 3.6757 -0.0057 7 6 4.0560 2.5171 -0.0058 8 6 3.4311 1.2848 0.0000 9 6 4.2537 0.0220 -0.0006 10 1 3.7193 -0.7619 -0.5374 11 6 5.6010 0.2836 -0.6811 12 6 6.4817 -0.9617 -0.5557 13 6 6.7376 -1.2607 0.9233 14 6 5.4031 -1.5398 1.6220 15 7 4.4983 -0.4071 1.3830 16 6 3.9042 0.2264 2.4137 17 8 3.0835 1.0990 2.1999 18 6 4.2462 -0.1353 3.7902 19 1 4.6403 -1.1167 4.0087 20 6 4.0624 0.7916 4.8240 21 7 4.2422 0.4287 6.0664 22 14 3.5603 2.5464 4.4267 23 1 2.0821 2.6672 4.5012 24 1 4.1825 3.4731 5.4062 25 1 4.0170 2.8940 3.0572 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 0.2128 2.3204 0.0098 30 1 1.3341 4.5113 -0.0004 31 1 3.7923 4.6380 -0.0098 32 1 5.1344 2.5751 -0.0103 33 1 5.4385 0.5096 -1.7351 34 1 6.0941 1.1280 -0.1994 35 1 7.4318 -0.7870 -1.0605 36 1 5.9768 -1.8111 -1.0158 37 1 7.2199 -0.4019 1.3899 38 1 7.3840 -2.1339 1.0114 39 1 5.5686 -1.6556 2.6931 40 1 4.9625 -2.4510 1.2176 41 1 4.1153 1.0708 6.7823 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613938185.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:17 Heat of formation + Delta-G solvation = -39.522486 kcal Electronic energy + Delta-G solvation = -24796.676484 eV Core-core repulsion = 21449.118179 eV Total energy + Delta-G solvation = -3347.558306 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.10994 -38.45766 -36.61215 -36.11082 -32.88095 -32.18759 -31.81744 -29.46618 -28.72931 -26.80126 -26.59229 -24.25983 -23.22929 -21.60569 -20.93526 -20.27433 -18.62826 -17.48905 -16.60916 -15.97443 -15.67684 -15.22175 -15.00749 -14.66854 -14.19987 -14.11141 -13.86126 -13.57071 -13.42838 -13.09869 -12.78497 -12.29084 -12.14538 -11.96868 -11.87254 -11.62756 -11.53518 -11.26739 -10.86392 -10.80338 -10.55099 -10.52331 -10.37501 -10.31364 -10.11628 -9.88202 -9.35906 -8.97249 -8.62175 -7.83444 -7.36318 -6.70870 -6.51600 -4.70784 2.06198 2.20809 3.48396 3.52649 3.80045 3.84276 4.16958 4.29774 4.53870 4.69827 5.05904 5.17672 5.22687 5.32944 5.43947 5.46843 5.56222 5.56423 5.60352 5.68817 5.78021 5.83644 5.91280 5.99271 6.04747 6.13880 6.22063 6.26618 6.27625 6.37021 6.50742 6.59339 6.67593 6.76333 6.97681 7.09982 7.15119 7.23019 7.47407 7.71968 7.98214 8.05408 8.41406 8.83391 9.24300 10.15640 10.49152 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.011625 B = 0.010139 C = 0.007246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.929682 B = 2760.919957 C = 3863.512187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.312 6.312 3 C 0.167 3.833 4 C -0.209 4.209 5 C -0.101 4.101 6 C -0.154 4.154 7 C -0.090 4.090 8 C -0.040 4.040 9 C 0.196 3.804 10 H 0.065 0.935 11 C -0.131 4.131 12 C -0.114 4.114 13 C -0.135 4.135 14 C 0.120 3.880 15 N -0.623 5.623 16 C 0.560 3.440 17 O -0.581 6.581 18 C -0.535 4.535 19 H 0.087 0.913 20 C 0.105 3.895 21 N -0.838 5.838 22 Si 0.943 3.057 23 H -0.282 1.282 24 H -0.321 1.321 25 H -0.245 1.245 26 H 0.052 0.948 27 H 0.045 0.955 28 H 0.091 0.909 29 H 0.113 0.887 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.117 0.883 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.099 0.901 40 H 0.044 0.956 41 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.160 -0.104 -13.440 13.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.225 6.225 3 C 0.122 3.878 4 C -0.228 4.228 5 C -0.120 4.120 6 C -0.172 4.172 7 C -0.109 4.109 8 C -0.041 4.041 9 C 0.092 3.908 10 H 0.083 0.917 11 C -0.169 4.169 12 C -0.152 4.152 13 C -0.173 4.173 14 C -0.004 4.004 15 N -0.357 5.357 16 C 0.368 3.632 17 O -0.470 6.470 18 C -0.571 4.571 19 H 0.105 0.895 20 C -0.111 4.111 21 N -0.469 5.469 22 Si 0.773 3.227 23 H -0.208 1.208 24 H -0.252 1.252 25 H -0.168 1.168 26 H 0.071 0.929 27 H 0.064 0.936 28 H 0.109 0.891 29 H 0.131 0.869 30 H 0.127 0.873 31 H 0.127 0.873 32 H 0.135 0.865 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.117 0.883 40 H 0.062 0.938 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.492 0.107 -13.347 13.356 hybrid contribution -0.469 0.788 0.293 0.963 sum -0.962 0.895 -13.054 13.120 Atomic orbital electron populations 1.22888 0.79664 1.02935 1.00677 1.86034 1.20279 1.27542 1.88683 1.18445 0.91481 0.83528 0.94390 1.20855 0.98774 0.92626 1.10500 1.20570 0.94512 0.96239 1.00651 1.20704 0.93857 0.97517 1.05161 1.20564 0.98965 0.91281 1.00091 1.18690 0.90226 0.94610 1.00567 1.19582 0.93080 0.93222 0.84899 0.91727 1.22063 0.96311 0.98557 0.99992 1.21475 0.99044 0.97792 0.96898 1.21938 0.98260 1.01643 0.95485 1.21490 0.88477 0.88223 1.02196 1.47903 1.48930 1.35062 1.03839 1.18316 0.79840 0.79887 0.85188 1.90434 1.37250 1.36467 1.82830 1.20740 1.45083 1.02709 0.88546 0.89469 1.25630 0.90072 1.01635 0.93778 1.69561 1.40175 1.37119 1.00066 0.85615 0.78878 0.80032 0.78127 1.20775 1.25248 1.16839 0.92927 0.93594 0.89102 0.86881 0.87322 0.87349 0.86540 0.91696 0.91244 0.92468 0.92321 0.91556 0.91839 0.88306 0.93794 0.91158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 9.81 101.05 0.99 1.49 16 2 O -0.31 -6.10 9.57 -19.41 -0.19 -6.28 16 3 C 0.17 3.41 4.65 -39.21 -0.18 3.23 16 4 C -0.21 -3.93 9.04 -39.43 -0.36 -4.29 16 5 C -0.10 -1.83 10.04 -39.60 -0.40 -2.23 16 6 C -0.15 -2.84 10.04 -39.56 -0.40 -3.24 16 7 C -0.09 -1.76 8.67 -39.61 -0.34 -2.10 16 8 C -0.04 -0.81 2.93 -104.47 -0.31 -1.11 16 9 C 0.20 3.71 2.89 -68.75 -0.20 3.51 16 10 H 0.06 1.22 7.59 -51.93 -0.39 0.82 16 11 C -0.13 -2.00 4.81 -26.61 -0.13 -2.13 16 12 C -0.11 -1.54 5.88 -26.69 -0.16 -1.69 16 13 C -0.13 -2.01 6.08 -26.61 -0.16 -2.17 16 14 C 0.12 2.19 6.34 -3.71 -0.02 2.17 16 15 N -0.62 -13.40 2.97 -168.18 -0.50 -13.90 16 16 C 0.56 14.55 6.97 -12.99 -0.09 14.46 16 17 O -0.58 -15.77 7.80 5.20 0.04 -15.73 16 18 C -0.53 -14.99 9.16 -35.63 -0.33 -15.32 16 19 H 0.09 2.47 6.29 -52.49 -0.33 2.14 16 20 C 0.11 3.02 5.52 -17.37 -0.10 2.92 16 21 N -0.84 -24.25 13.92 55.55 0.77 -23.48 16 22 Si 0.94 25.14 26.24 -169.99 -4.46 20.68 16 23 H -0.28 -7.77 7.11 56.52 0.40 -7.37 16 24 H -0.32 -8.32 7.11 56.52 0.40 -7.92 16 25 H -0.24 -6.72 6.35 56.52 0.36 -6.36 16 26 H 0.05 0.81 7.65 -51.93 -0.40 0.41 16 27 H 0.05 0.56 7.67 -51.92 -0.40 0.17 16 28 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.11 1.85 6.30 -52.49 -0.33 1.52 16 30 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 31 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 32 H 0.12 2.09 6.00 -52.49 -0.32 1.78 16 33 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 34 H 0.07 1.12 6.22 -51.93 -0.32 0.80 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.10 1.99 5.46 -51.93 -0.28 1.70 16 40 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.28 7.49 8.29 -40.82 -0.34 7.15 16 LS Contribution 318.49 15.07 4.80 4.80 Total: -1.00 -32.57 318.49 -7.46 -40.03 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -5.75 Total: 0.38 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: -2.17 Total: -6.50 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: 0.27 Total: -37.38 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: -0.15 Total: -22.02 kcal Atomic # 14 Polarization: 25.14 SS G_CDS: -4.46 Total: 20.68 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.57 -7.46 -40.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613938185.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.512 kcal (2) G-P(sol) polarization free energy of solvation -32.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds