Wall clock time and date at job start Tue Mar 31 2020 06:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35896 * 117.00148 * 2 1 4 4 C 1.38757 * 120.05769 * 0.25282 * 3 2 1 5 5 C 1.38124 * 119.94455 * 180.27567 * 4 3 2 6 6 C 1.38290 * 120.05467 * 359.72296 * 5 4 3 7 7 C 1.38238 * 120.11365 * 0.02638 * 6 5 4 8 8 C 1.38169 * 120.05654 * 359.97262 * 7 6 5 9 9 C 1.50702 * 120.03196 * 179.97438 * 8 7 6 10 10 H 1.08997 * 109.58705 * 211.79228 * 9 8 7 11 11 C 1.53197 * 109.70274 * 332.14870 * 9 8 7 12 12 C 1.53038 * 109.31506 * 174.49052 * 11 9 8 13 13 C 1.53044 * 109.53658 * 298.63319 * 12 11 9 14 14 C 1.53197 * 109.31232 * 61.36179 * 13 12 11 15 15 N 1.46921 * 109.58516 * 91.50166 * 9 8 7 16 16 C 1.34782 * 120.63211 * 6.44812 * 15 9 8 17 17 O 1.21685 * 119.99724 * 5.31504 * 16 15 9 18 18 C 1.46372 * 120.00043 * 185.31920 * 16 15 9 19 19 H 1.07995 * 120.00461 * 335.66365 * 18 16 15 20 20 C 1.40054 * 119.99924 * 155.66061 * 18 16 15 21 21 N 1.30667 * 119.99957 * 173.28713 * 20 18 16 22 22 Si 1.86800 * 119.99685 * 353.29255 * 20 18 16 23 23 H 1.48501 * 109.47167 * 93.84937 * 22 20 18 24 24 H 1.48502 * 109.46923 * 213.84081 * 22 20 18 25 25 H 1.48497 * 109.47433 * 333.84272 * 22 20 18 26 26 H 1.08999 * 109.47292 * 300.00377 * 1 2 3 27 27 H 1.09008 * 109.46860 * 59.99707 * 1 2 3 28 28 H 1.08999 * 109.47269 * 179.97438 * 1 2 3 29 29 H 1.07999 * 120.02891 * 0.02562 * 4 3 2 30 30 H 1.07992 * 119.97176 * 179.75212 * 5 4 3 31 31 H 1.07999 * 119.94193 * 180.02562 * 6 5 4 32 32 H 1.08000 * 119.97448 * 179.97438 * 7 6 5 33 33 H 1.09007 * 109.49298 * 294.44198 * 11 9 8 34 34 H 1.09001 * 109.49778 * 54.53332 * 11 9 8 35 35 H 1.08997 * 109.46424 * 178.61232 * 12 11 9 36 36 H 1.08999 * 109.44736 * 58.64326 * 12 11 9 37 37 H 1.08995 * 109.49545 * 301.41544 * 13 12 11 38 38 H 1.09001 * 109.49880 * 181.31578 * 13 12 11 39 39 H 1.08998 * 109.58694 * 185.57632 * 14 13 12 40 40 H 1.08998 * 109.58333 * 65.15204 * 14 13 12 41 41 H 0.97003 * 119.99552 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2914 2.3753 0.0053 5 6 1.9209 3.6048 -0.0005 6 6 3.3020 3.6757 -0.0057 7 6 4.0560 2.5171 -0.0058 8 6 3.4311 1.2848 0.0000 9 6 4.2537 0.0220 -0.0006 10 1 3.7193 -0.7619 -0.5374 11 6 5.6010 0.2836 -0.6811 12 6 6.4817 -0.9617 -0.5557 13 6 6.7376 -1.2607 0.9233 14 6 5.4031 -1.5398 1.6220 15 7 4.4983 -0.4071 1.3830 16 6 3.9042 0.2264 2.4137 17 8 3.0835 1.0990 2.1999 18 6 4.2462 -0.1353 3.7902 19 1 4.6403 -1.1167 4.0087 20 6 4.0624 0.7916 4.8240 21 7 4.2422 0.4287 6.0664 22 14 3.5603 2.5464 4.4267 23 1 2.0821 2.6672 4.5012 24 1 4.1825 3.4731 5.4062 25 1 4.0170 2.8940 3.0572 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 0.2128 2.3204 0.0098 30 1 1.3341 4.5113 -0.0004 31 1 3.7923 4.6380 -0.0098 32 1 5.1344 2.5751 -0.0103 33 1 5.4385 0.5096 -1.7351 34 1 6.0941 1.1280 -0.1994 35 1 7.4318 -0.7870 -1.0605 36 1 5.9768 -1.8111 -1.0158 37 1 7.2199 -0.4019 1.3899 38 1 7.3840 -2.1339 1.0114 39 1 5.5686 -1.6556 2.6931 40 1 4.9625 -2.4510 1.2176 41 1 4.1153 1.0708 6.7823 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613938185.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:17 Heat of formation + Delta-G solvation = -59.556979 kcal Electronic energy + Delta-G solvation = -24797.545245 eV Core-core repulsion = 21449.118179 eV Total energy + Delta-G solvation = -3348.427067 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.60166 -39.98185 -38.08888 -37.75156 -34.94904 -33.70827 -33.32986 -30.86913 -30.07693 -28.67955 -27.99764 -25.78523 -24.60248 -23.02684 -22.49269 -21.71654 -20.24848 -18.92309 -18.47598 -17.83865 -17.07829 -16.80311 -16.55574 -16.12158 -15.84312 -15.67105 -15.15569 -14.97807 -14.81675 -14.70571 -14.30546 -14.12077 -13.77749 -13.66117 -13.37338 -13.23427 -12.96728 -12.76501 -12.60432 -12.35787 -12.07696 -11.87634 -11.84583 -11.79085 -11.47123 -11.27037 -11.19009 -11.13307 -10.33674 -9.35264 -9.05666 -8.72933 -8.33995 -6.88576 0.61566 0.76617 1.33877 1.36333 1.64526 2.19425 2.35267 2.53698 2.69013 3.18529 3.39638 3.76850 3.91726 4.01329 4.12842 4.22452 4.28365 4.33262 4.35690 4.38702 4.48571 4.58278 4.62681 4.67933 4.70438 4.90718 4.93491 4.99621 5.03763 5.11052 5.23072 5.25701 5.26691 5.33680 5.52687 5.58265 5.69875 5.76845 5.79336 6.09112 6.11169 6.33524 6.66766 6.73940 7.27528 8.16074 8.35801 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.011625 B = 0.010139 C = 0.007246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.929682 B = 2760.919957 C = 3863.512187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.336 6.336 3 C 0.148 3.852 4 C -0.222 4.222 5 C -0.106 4.106 6 C -0.167 4.167 7 C -0.101 4.101 8 C -0.067 4.067 9 C 0.194 3.806 10 H 0.064 0.936 11 C -0.125 4.125 12 C -0.108 4.108 13 C -0.127 4.127 14 C 0.113 3.887 15 N -0.622 5.622 16 C 0.560 3.440 17 O -0.595 6.595 18 C -0.552 4.552 19 H 0.074 0.926 20 C 0.071 3.929 21 N -0.867 5.867 22 Si 0.993 3.007 23 H -0.297 1.297 24 H -0.310 1.310 25 H -0.257 1.257 26 H 0.040 0.960 27 H 0.070 0.930 28 H 0.113 0.887 29 H 0.132 0.868 30 H 0.138 0.862 31 H 0.132 0.868 32 H 0.125 0.875 33 H 0.087 0.913 34 H 0.059 0.941 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.050 0.950 38 H 0.092 0.908 39 H 0.072 0.928 40 H 0.060 0.940 41 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.267 0.215 -15.518 15.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.249 6.249 3 C 0.102 3.898 4 C -0.241 4.241 5 C -0.124 4.124 6 C -0.186 4.186 7 C -0.120 4.120 8 C -0.068 4.068 9 C 0.091 3.909 10 H 0.082 0.918 11 C -0.163 4.163 12 C -0.146 4.146 13 C -0.165 4.165 14 C -0.010 4.010 15 N -0.355 5.355 16 C 0.364 3.636 17 O -0.485 6.485 18 C -0.589 4.589 19 H 0.092 0.908 20 C -0.142 4.142 21 N -0.500 5.500 22 Si 0.825 3.175 23 H -0.224 1.224 24 H -0.240 1.240 25 H -0.182 1.182 26 H 0.059 0.941 27 H 0.089 0.911 28 H 0.132 0.868 29 H 0.150 0.850 30 H 0.156 0.844 31 H 0.150 0.850 32 H 0.143 0.857 33 H 0.106 0.894 34 H 0.077 0.923 35 H 0.104 0.896 36 H 0.090 0.910 37 H 0.069 0.931 38 H 0.111 0.889 39 H 0.091 0.909 40 H 0.079 0.921 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.042 0.406 -15.444 15.449 hybrid contribution -0.676 0.627 0.854 1.256 sum -0.718 1.033 -14.590 14.644 Atomic orbital electron populations 1.23146 0.77571 1.04731 1.01265 1.85984 1.22579 1.27632 1.88746 1.18753 0.92027 0.84238 0.94774 1.21214 0.99951 0.92654 1.10242 1.20997 0.94850 0.97150 0.99412 1.21091 0.94345 0.98332 1.04787 1.20836 0.99670 0.91586 0.99880 1.18978 0.90764 0.95388 1.01656 1.19795 0.95092 0.92823 0.83223 0.91764 1.22029 0.94329 0.99242 1.00667 1.21475 1.00151 0.97188 0.95756 1.21879 0.96198 1.02285 0.96168 1.21659 0.90086 0.87904 1.01347 1.47844 1.48315 1.35013 1.04371 1.18116 0.79824 0.80125 0.85509 1.90417 1.37652 1.36881 1.83555 1.20979 1.45343 1.02327 0.90202 0.90845 1.26126 0.90437 1.03685 0.93920 1.69586 1.41746 1.38075 1.00550 0.84862 0.77339 0.78038 0.77302 1.22449 1.23998 1.18184 0.94089 0.91112 0.86833 0.85011 0.84443 0.85012 0.85719 0.89406 0.92251 0.89577 0.91036 0.93134 0.88932 0.90927 0.92138 0.90474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 9.81 113.37 1.11 1.89 16 2 O -0.34 -12.93 9.57 -92.38 -0.88 -13.81 16 3 C 0.15 5.93 4.65 22.51 0.10 6.04 16 4 C -0.22 -8.09 9.04 22.37 0.20 -7.89 16 5 C -0.11 -3.63 10.04 22.26 0.22 -3.40 16 6 C -0.17 -5.89 10.04 22.28 0.22 -5.67 16 7 C -0.10 -3.83 8.67 22.25 0.19 -3.64 16 8 C -0.07 -2.67 2.93 -19.77 -0.06 -2.72 16 9 C 0.19 7.11 2.89 44.23 0.13 7.23 16 10 H 0.06 2.35 7.59 -2.39 -0.02 2.33 16 11 C -0.12 -3.51 4.81 30.67 0.15 -3.36 16 12 C -0.11 -2.52 5.88 30.62 0.18 -2.34 16 13 C -0.13 -3.50 6.08 30.67 0.19 -3.32 16 14 C 0.11 4.06 6.34 86.36 0.55 4.60 16 15 N -0.62 -26.60 2.97 -804.23 -2.39 -28.99 16 16 C 0.56 29.40 6.97 86.36 0.60 30.00 16 17 O -0.60 -32.50 7.80 -4.30 -0.03 -32.54 16 18 C -0.55 -31.69 9.16 24.83 0.23 -31.47 16 19 H 0.07 4.32 6.29 -2.91 -0.02 4.30 16 20 C 0.07 4.16 5.52 85.31 0.47 4.63 16 21 N -0.87 -50.99 13.92 21.84 0.30 -50.69 16 22 Si 0.99 52.67 26.24 68.60 1.80 54.47 16 23 H -0.30 -16.36 7.11 99.48 0.71 -15.65 16 24 H -0.31 -15.53 7.11 99.48 0.71 -14.83 16 25 H -0.26 -14.04 6.35 99.48 0.63 -13.41 16 26 H 0.04 1.23 7.65 -2.39 -0.02 1.21 16 27 H 0.07 1.61 7.67 -2.38 -0.02 1.59 16 28 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 29 H 0.13 4.11 6.30 -2.91 -0.02 4.09 16 30 H 0.14 3.78 8.06 -2.91 -0.02 3.76 16 31 H 0.13 3.87 8.06 -2.91 -0.02 3.85 16 32 H 0.13 4.35 6.00 -2.91 -0.02 4.33 16 33 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 34 H 0.06 1.80 6.22 -2.39 -0.01 1.78 16 35 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.07 2.99 5.46 -2.39 -0.01 2.97 16 40 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.29 15.50 8.29 -92.71 -0.77 14.73 16 Total: -1.00 -70.94 318.49 4.24 -66.69 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 0.96 Total: 14.28 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: 4.49 Total: -9.42 kcal Atomic # 7 Polarization: -77.59 SS G_CDS: -2.09 Total: -79.68 kcal Atomic # 8 Polarization: -45.43 SS G_CDS: -0.92 Total: -46.35 kcal Atomic # 14 Polarization: 52.67 SS G_CDS: 1.80 Total: 54.47 kcal Total: -70.94 4.24 -66.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613938185.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.136 kcal (2) G-P(sol) polarization free energy of solvation -70.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds