Wall clock time and date at job start Tue Mar 31 2020 06:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42893 * 113.99963 * 2 1 4 4 C 1.52999 * 109.57919 * 305.03172 * 3 2 1 5 5 O 1.42899 * 109.47101 * 299.23147 * 4 3 2 6 6 C 1.53127 * 109.52017 * 65.18954 * 3 2 1 7 7 C 1.53038 * 109.27568 * 62.25060 * 6 3 2 8 8 N 1.46842 * 109.52751 * 59.17831 * 7 6 3 9 9 C 1.46904 * 111.00280 * 174.16056 * 8 7 6 10 10 C 1.52995 * 109.47142 * 170.00148 * 9 8 7 11 11 C 1.53001 * 109.47207 * 179.97438 * 10 9 8 12 12 S 1.80996 * 109.47468 * 179.97438 * 11 10 9 13 13 C 1.76193 * 100.00190 * 180.02562 * 12 11 10 14 14 H 1.08003 * 120.00016 * 0.02562 * 13 12 11 15 15 C 1.38797 * 120.00304 * 180.02562 * 13 12 11 16 16 N 1.31634 * 120.00386 * 180.02562 * 15 13 12 17 17 Si 1.86795 * 119.99816 * 359.97438 * 15 13 12 18 18 H 1.48508 * 109.47294 * 90.00001 * 17 15 13 19 19 H 1.48502 * 109.47386 * 209.99873 * 17 15 13 20 20 H 1.48499 * 109.47321 * 330.00240 * 17 15 13 21 21 C 1.46850 * 111.19814 * 298.25838 * 8 7 6 22 22 C 1.53035 * 109.52221 * 61.74294 * 21 8 7 23 23 H 1.09000 * 109.47240 * 64.58855 * 1 2 3 24 24 H 1.09008 * 109.47443 * 184.58884 * 1 2 3 25 25 H 1.08997 * 109.47368 * 304.58723 * 1 2 3 26 26 H 1.09002 * 109.47109 * 59.23600 * 4 3 2 27 27 H 1.09002 * 109.47285 * 179.23405 * 4 3 2 28 28 H 0.96702 * 114.00323 * 179.97438 * 5 4 3 29 29 H 1.08990 * 109.50183 * 302.30521 * 6 3 2 30 30 H 1.08996 * 109.50150 * 182.18834 * 6 3 2 31 31 H 1.09000 * 109.46239 * 179.19642 * 7 6 3 32 32 H 1.08999 * 109.46016 * 299.16128 * 7 6 3 33 33 H 1.08999 * 109.46704 * 290.00207 * 9 8 7 34 34 H 1.09001 * 109.46701 * 50.00018 * 9 8 7 35 35 H 1.09003 * 109.47235 * 300.00135 * 10 9 8 36 36 H 1.09005 * 109.47291 * 59.99838 * 10 9 8 37 37 H 1.09003 * 109.47216 * 300.00247 * 11 10 9 38 38 H 1.09005 * 109.47045 * 59.99788 * 11 10 9 39 39 H 0.96995 * 119.99963 * 179.97438 * 16 15 13 40 40 H 1.09001 * 109.46149 * 181.75316 * 21 8 7 41 41 H 1.08998 * 109.46090 * 301.72298 * 21 8 7 42 42 H 1.08995 * 109.50744 * 60.76077 * 22 21 8 43 43 H 1.08997 * 109.50254 * 180.84124 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.4628 2.1103 -1.1804 5 8 1.8041 1.4546 -2.4033 6 6 1.6650 2.0191 1.3100 7 6 2.2673 1.2418 2.4827 8 7 3.7241 1.1578 2.3194 9 6 4.3510 0.5392 3.4951 10 6 5.8207 0.2412 3.1920 11 6 6.4738 -0.4025 4.4167 12 16 8.2123 -0.7557 4.0579 13 6 8.7022 -1.4707 5.5919 14 1 7.9858 -1.5719 6.3938 15 6 10.0087 -1.9041 5.7699 16 7 10.3746 -2.4387 6.9157 17 14 11.2476 -1.7298 4.3827 18 1 11.9314 -0.4160 4.4918 19 1 12.2519 -2.8197 4.4760 20 1 10.5445 -1.8149 3.0775 21 6 4.0800 0.4348 1.0917 22 6 3.5320 1.1880 -0.1225 23 1 -0.3634 0.4410 -0.9282 24 1 -0.3634 -1.0244 0.0822 25 1 -0.3634 0.5833 0.8460 26 1 0.3784 2.1843 -1.0980 27 1 1.8968 3.1102 -1.1709 28 1 1.4879 1.9101 -3.1955 29 1 0.5821 2.0679 1.4235 30 1 2.0756 3.0287 1.2935 31 1 2.0355 1.7551 3.4160 32 1 1.8460 0.2369 2.5069 33 1 4.2858 1.2214 4.3427 34 1 3.8340 -0.3898 3.7358 35 1 5.8859 -0.4410 2.3443 36 1 6.3376 1.1702 2.9512 37 1 6.4086 0.2800 5.2641 38 1 5.9569 -1.3315 4.6580 39 1 11.2876 -2.7419 7.0399 40 1 5.1648 0.3620 1.0146 41 1 3.6502 -0.5664 1.1224 42 1 3.9718 2.1845 -0.1616 43 1 3.7834 0.6433 -1.0325 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618551059.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:28 Heat of formation + Delta-G solvation = -101.274801 kcal Electronic energy + Delta-G solvation = -21425.987586 eV Core-core repulsion = 18211.195450 eV Total energy + Delta-G solvation = -3214.792136 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.37968 -37.72549 -36.40002 -34.08740 -32.40793 -31.71361 -31.00787 -27.69249 -27.06754 -25.72018 -24.64333 -23.56801 -22.04302 -20.46557 -19.77616 -17.71981 -17.42955 -16.70497 -16.25226 -15.67971 -15.59831 -15.10902 -14.94621 -14.79543 -14.27892 -14.05215 -13.86425 -13.50400 -12.98972 -12.82638 -12.77084 -12.60467 -12.43112 -11.88128 -11.83014 -11.57998 -11.41257 -11.24134 -11.04965 -11.00552 -10.83205 -10.55994 -10.40953 -10.15648 -10.01433 -9.72674 -9.71631 -8.97417 -8.52274 -8.26098 -6.90441 -6.25421 -3.97250 3.04055 3.32874 3.40308 3.48592 3.59170 3.84738 3.98590 4.34787 4.42849 4.43729 4.71666 4.84173 4.88902 4.97341 4.99909 5.04152 5.11873 5.13369 5.24074 5.26694 5.36200 5.37564 5.42848 5.50396 5.60739 5.63196 5.71790 5.80379 5.85016 5.89799 5.97352 6.13142 6.15986 6.28014 6.52859 6.67336 6.99963 7.10501 7.12618 7.23706 7.98489 8.47406 9.20648 10.84154 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.034155 B = 0.002860 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.589156 B = 9786.181408 C =10190.556955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.364 6.364 3 C 0.119 3.881 4 C 0.051 3.949 5 O -0.559 6.559 6 C -0.138 4.138 7 C 0.062 3.938 8 N -0.538 5.538 9 C 0.061 3.939 10 C -0.104 4.104 11 C -0.081 4.081 12 S -0.216 6.216 13 C -0.501 4.501 14 H 0.087 0.913 15 C 0.091 3.909 16 N -0.883 5.883 17 Si 0.862 3.138 18 H -0.269 1.269 19 H -0.276 1.276 20 H -0.238 1.238 21 C 0.048 3.952 22 C -0.095 4.095 23 H 0.040 0.960 24 H 0.083 0.917 25 H 0.041 0.959 26 H 0.047 0.953 27 H 0.056 0.944 28 H 0.376 0.624 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.039 0.961 33 H 0.075 0.925 34 H 0.034 0.966 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.270 0.730 40 H 0.087 0.913 41 H 0.042 0.958 42 H 0.081 0.919 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.915 10.608 -16.200 29.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.283 6.283 3 C 0.079 3.921 4 C -0.027 4.027 5 O -0.363 6.363 6 C -0.176 4.176 7 C -0.066 4.066 8 N -0.263 5.263 9 C -0.068 4.068 10 C -0.143 4.143 11 C -0.230 4.230 12 S 0.012 5.988 13 C -0.649 4.649 14 H 0.106 0.894 15 C -0.117 4.117 16 N -0.520 5.520 17 Si 0.687 3.313 18 H -0.194 1.194 19 H -0.202 1.202 20 H -0.161 1.161 21 C -0.080 4.080 22 C -0.133 4.133 23 H 0.059 0.941 24 H 0.102 0.898 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.222 0.778 29 H 0.087 0.913 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.057 0.943 33 H 0.094 0.906 34 H 0.052 0.948 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.106 0.894 41 H 0.060 0.940 42 H 0.099 0.901 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -20.584 10.581 -16.641 28.506 hybrid contribution -0.919 -0.390 0.532 1.131 sum -21.503 10.192 -16.109 28.736 Atomic orbital electron populations 1.22756 0.82067 1.02612 0.99648 1.88031 1.18951 1.26621 1.94697 1.21635 0.95190 0.83452 0.91837 1.22819 0.98503 0.95765 0.85643 1.86581 1.81106 1.53376 1.15256 1.22104 1.00519 1.00606 0.94418 1.21908 0.88032 0.99110 0.97575 1.62050 1.08448 1.52930 1.02858 1.22142 0.94693 0.97395 0.92542 1.21501 0.93601 1.01447 0.97741 1.23013 0.98034 1.02238 0.99754 1.84139 1.07984 1.80914 1.25777 1.22130 0.99940 1.45522 0.97266 0.89448 1.24802 0.97586 0.93509 0.95824 1.69941 1.18987 1.39483 1.23596 0.86662 0.81877 0.78640 0.84113 1.19372 1.20154 1.16146 1.22199 1.01394 0.95557 0.88800 1.21520 0.90942 1.02050 0.98758 0.94104 0.89829 0.94066 0.93514 0.92613 0.77788 0.91263 0.89844 0.90732 0.94269 0.90623 0.94819 0.91195 0.90648 0.91390 0.91588 0.92009 0.89435 0.93958 0.90074 0.90002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.13 101.05 1.02 1.23 16 2 O -0.36 -4.17 9.11 -44.02 -0.40 -4.57 16 3 C 0.12 1.16 0.49 -90.49 -0.04 1.11 16 4 C 0.05 0.39 5.45 37.16 0.20 0.59 16 5 O -0.56 -4.77 12.92 -44.02 -0.57 -5.34 16 6 C -0.14 -1.20 4.72 -26.65 -0.13 -1.33 16 7 C 0.06 0.66 5.29 -3.84 -0.02 0.64 16 8 N -0.54 -6.69 4.81 -234.67 -1.13 -7.82 16 9 C 0.06 0.83 5.27 -3.82 -0.02 0.81 16 10 C -0.10 -1.67 4.47 -26.73 -0.12 -1.78 16 11 C -0.08 -1.62 5.67 37.16 0.21 -1.40 16 12 S -0.22 -5.37 19.41 -107.50 -2.09 -7.46 16 13 C -0.50 -14.78 10.04 30.94 0.31 -14.47 16 14 H 0.09 2.74 8.03 -52.48 -0.42 2.32 16 15 C 0.09 2.70 5.50 -17.43 -0.10 2.60 16 16 N -0.88 -27.16 13.97 55.49 0.78 -26.39 16 17 Si 0.86 21.88 27.74 -169.99 -4.71 17.17 16 18 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 20 H -0.24 -5.91 6.74 56.52 0.38 -5.53 16 21 C 0.05 0.61 4.71 -3.83 -0.02 0.59 16 22 C -0.10 -1.05 4.92 -26.65 -0.13 -1.18 16 23 H 0.04 0.30 6.60 -51.93 -0.34 -0.04 16 24 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 25 H 0.04 0.28 6.31 -51.93 -0.33 -0.04 16 26 H 0.05 0.29 6.55 -51.93 -0.34 -0.05 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.38 1.44 9.12 45.56 0.42 1.86 16 29 H 0.07 0.49 6.46 -51.93 -0.34 0.15 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.72 8.12 -51.93 -0.42 0.30 16 32 H 0.04 0.45 7.76 -51.93 -0.40 0.05 16 33 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.03 0.47 8.08 -51.93 -0.42 0.05 16 35 H 0.07 1.12 6.21 -51.93 -0.32 0.80 16 36 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.07 1.35 8.14 -51.92 -0.42 0.92 16 38 H 0.07 1.32 8.14 -51.91 -0.42 0.90 16 39 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16 40 H 0.09 1.15 5.81 -51.93 -0.30 0.85 16 41 H 0.04 0.59 7.76 -51.93 -0.40 0.19 16 42 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.08 0.97 7.75 -51.93 -0.40 0.57 16 LS Contribution 343.60 15.07 5.18 5.18 Total: -1.00 -33.34 343.60 -8.34 -41.68 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -6.56 Total: 0.14 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: 1.17 Total: -12.59 kcal Atomic # 7 Polarization: -33.85 SS G_CDS: -0.35 Total: -34.20 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -0.97 Total: -9.91 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.71 Total: 17.17 kcal Atomic # 16 Polarization: -5.37 SS G_CDS: -2.09 Total: -7.46 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.34 -8.34 -41.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618551059.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.597 kcal (2) G-P(sol) polarization free energy of solvation -33.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds