Wall clock time and date at job start Tue Mar 31 2020 06:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42893 * 113.99963 * 2 1 4 4 C 1.52999 * 109.57919 * 305.03172 * 3 2 1 5 5 O 1.42899 * 109.47101 * 299.23147 * 4 3 2 6 6 C 1.53127 * 109.52017 * 65.18954 * 3 2 1 7 7 C 1.53038 * 109.27568 * 62.25060 * 6 3 2 8 8 N 1.46842 * 109.52751 * 59.17831 * 7 6 3 9 9 C 1.46904 * 111.00280 * 174.16056 * 8 7 6 10 10 C 1.52995 * 109.47142 * 170.00148 * 9 8 7 11 11 C 1.53001 * 109.47207 * 179.97438 * 10 9 8 12 12 S 1.80996 * 109.47468 * 179.97438 * 11 10 9 13 13 C 1.76193 * 100.00190 * 180.02562 * 12 11 10 14 14 H 1.08003 * 120.00016 * 0.02562 * 13 12 11 15 15 C 1.38797 * 120.00304 * 180.02562 * 13 12 11 16 16 N 1.31634 * 120.00386 * 180.02562 * 15 13 12 17 17 Si 1.86795 * 119.99816 * 359.97438 * 15 13 12 18 18 H 1.48508 * 109.47294 * 90.00001 * 17 15 13 19 19 H 1.48502 * 109.47386 * 209.99873 * 17 15 13 20 20 H 1.48499 * 109.47321 * 330.00240 * 17 15 13 21 21 C 1.46850 * 111.19814 * 298.25838 * 8 7 6 22 22 C 1.53035 * 109.52221 * 61.74294 * 21 8 7 23 23 H 1.09000 * 109.47240 * 64.58855 * 1 2 3 24 24 H 1.09008 * 109.47443 * 184.58884 * 1 2 3 25 25 H 1.08997 * 109.47368 * 304.58723 * 1 2 3 26 26 H 1.09002 * 109.47109 * 59.23600 * 4 3 2 27 27 H 1.09002 * 109.47285 * 179.23405 * 4 3 2 28 28 H 0.96702 * 114.00323 * 179.97438 * 5 4 3 29 29 H 1.08990 * 109.50183 * 302.30521 * 6 3 2 30 30 H 1.08996 * 109.50150 * 182.18834 * 6 3 2 31 31 H 1.09000 * 109.46239 * 179.19642 * 7 6 3 32 32 H 1.08999 * 109.46016 * 299.16128 * 7 6 3 33 33 H 1.08999 * 109.46704 * 290.00207 * 9 8 7 34 34 H 1.09001 * 109.46701 * 50.00018 * 9 8 7 35 35 H 1.09003 * 109.47235 * 300.00135 * 10 9 8 36 36 H 1.09005 * 109.47291 * 59.99838 * 10 9 8 37 37 H 1.09003 * 109.47216 * 300.00247 * 11 10 9 38 38 H 1.09005 * 109.47045 * 59.99788 * 11 10 9 39 39 H 0.96995 * 119.99963 * 179.97438 * 16 15 13 40 40 H 1.09001 * 109.46149 * 181.75316 * 21 8 7 41 41 H 1.08998 * 109.46090 * 301.72298 * 21 8 7 42 42 H 1.08995 * 109.50744 * 60.76077 * 22 21 8 43 43 H 1.08997 * 109.50254 * 180.84124 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.4628 2.1103 -1.1804 5 8 1.8041 1.4546 -2.4033 6 6 1.6650 2.0191 1.3100 7 6 2.2673 1.2418 2.4827 8 7 3.7241 1.1578 2.3194 9 6 4.3510 0.5392 3.4951 10 6 5.8207 0.2412 3.1920 11 6 6.4738 -0.4025 4.4167 12 16 8.2123 -0.7557 4.0579 13 6 8.7022 -1.4707 5.5919 14 1 7.9858 -1.5719 6.3938 15 6 10.0087 -1.9041 5.7699 16 7 10.3746 -2.4387 6.9157 17 14 11.2476 -1.7298 4.3827 18 1 11.9314 -0.4160 4.4918 19 1 12.2519 -2.8197 4.4760 20 1 10.5445 -1.8149 3.0775 21 6 4.0800 0.4348 1.0917 22 6 3.5320 1.1880 -0.1225 23 1 -0.3634 0.4410 -0.9282 24 1 -0.3634 -1.0244 0.0822 25 1 -0.3634 0.5833 0.8460 26 1 0.3784 2.1843 -1.0980 27 1 1.8968 3.1102 -1.1709 28 1 1.4879 1.9101 -3.1955 29 1 0.5821 2.0679 1.4235 30 1 2.0756 3.0287 1.2935 31 1 2.0355 1.7551 3.4160 32 1 1.8460 0.2369 2.5069 33 1 4.2858 1.2214 4.3427 34 1 3.8340 -0.3898 3.7358 35 1 5.8859 -0.4410 2.3443 36 1 6.3376 1.1702 2.9512 37 1 6.4086 0.2800 5.2641 38 1 5.9569 -1.3315 4.6580 39 1 11.2876 -2.7419 7.0399 40 1 5.1648 0.3620 1.0146 41 1 3.6502 -0.5664 1.1224 42 1 3.9718 2.1845 -0.1616 43 1 3.7834 0.6433 -1.0325 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000618551059.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:27 Heat of formation + Delta-G solvation = -126.507257 kcal Electronic energy + Delta-G solvation = -21427.081747 eV Core-core repulsion = 18211.195450 eV Total energy + Delta-G solvation = -3215.886297 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.14964 -38.62827 -37.02666 -35.17806 -34.68937 -32.71884 -31.88705 -28.61227 -27.93431 -27.71959 -25.81130 -24.47407 -22.98802 -21.59758 -20.57169 -19.61660 -18.27837 -17.53771 -17.15025 -17.05006 -16.55793 -16.33499 -16.29946 -15.94405 -15.55912 -15.13347 -14.95530 -14.66989 -14.26493 -13.97650 -13.80453 -13.66789 -13.39279 -13.22056 -13.06765 -12.99869 -12.79152 -12.55052 -12.30088 -12.08895 -12.03050 -11.73864 -11.64793 -11.60280 -11.16859 -11.07046 -10.83893 -10.55472 -10.41104 -9.27473 -8.99667 -8.52493 -6.23814 1.12106 1.31943 1.47923 1.73645 2.24775 2.67725 2.75548 2.85500 2.94967 3.33889 3.70455 3.72976 3.96899 3.99487 4.18296 4.20182 4.26878 4.37132 4.39811 4.40927 4.45161 4.51447 4.54256 4.59591 4.62960 4.71610 4.79432 4.82754 4.87076 4.90310 4.99199 5.10523 5.13807 5.18144 5.23298 5.29824 5.69291 6.07327 6.09445 6.15622 6.35393 6.90318 6.91579 8.60756 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.034155 B = 0.002860 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.589156 B = 9786.181408 C =10190.556955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.395 6.395 3 C 0.112 3.888 4 C 0.053 3.947 5 O -0.583 6.583 6 C -0.132 4.132 7 C 0.059 3.941 8 N -0.537 5.537 9 C 0.069 3.931 10 C -0.091 4.091 11 C -0.069 4.069 12 S -0.220 6.220 13 C -0.522 4.522 14 H 0.050 0.950 15 C 0.037 3.963 16 N -0.923 5.923 17 Si 0.926 3.074 18 H -0.260 1.260 19 H -0.263 1.263 20 H -0.230 1.230 21 C 0.051 3.949 22 C -0.092 4.092 23 H 0.049 0.951 24 H 0.084 0.916 25 H 0.055 0.945 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.394 0.606 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.027 0.973 33 H 0.085 0.915 34 H 0.030 0.970 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.277 0.723 40 H 0.078 0.922 41 H 0.023 0.977 42 H 0.089 0.911 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.018 12.263 -17.946 31.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.314 6.314 3 C 0.073 3.927 4 C -0.025 4.025 5 O -0.391 6.391 6 C -0.170 4.170 7 C -0.069 4.069 8 N -0.262 5.262 9 C -0.061 4.061 10 C -0.129 4.129 11 C -0.218 4.218 12 S 0.008 5.992 13 C -0.670 4.670 14 H 0.068 0.932 15 C -0.168 4.168 16 N -0.561 5.561 17 Si 0.747 3.253 18 H -0.184 1.184 19 H -0.187 1.187 20 H -0.153 1.153 21 C -0.077 4.077 22 C -0.130 4.130 23 H 0.068 0.932 24 H 0.103 0.897 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.244 0.756 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.105 0.895 32 H 0.045 0.955 33 H 0.103 0.897 34 H 0.048 0.952 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.041 0.959 42 H 0.107 0.893 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -21.711 12.247 -18.398 30.981 hybrid contribution -0.701 -0.916 1.117 1.606 sum -22.412 11.330 -17.281 30.485 Atomic orbital electron populations 1.22888 0.80642 1.03197 1.00690 1.87988 1.20668 1.27821 1.94966 1.21724 0.94081 0.83427 0.93476 1.22801 0.99468 0.95664 0.84550 1.86530 1.81631 1.54476 1.16431 1.22080 1.01707 1.00380 0.92819 1.22012 0.86576 0.99025 0.99251 1.62093 1.09818 1.52184 1.02067 1.22010 0.92893 0.97672 0.93488 1.21378 0.94959 1.00981 0.95614 1.23069 0.94593 1.02418 1.01700 1.83837 1.11934 1.80424 1.22973 1.22342 0.99770 1.46187 0.98688 0.93183 1.25795 0.99582 0.92929 0.98454 1.70039 1.19974 1.40376 1.25729 0.85700 0.79362 0.79299 0.80899 1.18449 1.18702 1.15319 1.22131 1.00709 0.95004 0.89829 1.21465 0.92524 1.01853 0.97131 0.93208 0.89701 0.92678 0.91827 0.91152 0.75604 0.89175 0.88877 0.89540 0.95490 0.89691 0.95181 0.91324 0.90459 0.91308 0.92006 0.91374 0.90420 0.95894 0.89255 0.91335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.13 113.37 1.15 1.47 16 2 O -0.39 -8.57 9.11 -140.58 -1.28 -9.85 16 3 C 0.11 1.98 0.49 -10.71 -0.01 1.97 16 4 C 0.05 0.67 5.45 71.98 0.39 1.07 16 5 O -0.58 -8.87 12.92 -140.58 -1.82 -10.68 16 6 C -0.13 -1.92 4.72 30.65 0.14 -1.78 16 7 C 0.06 1.13 5.29 86.33 0.46 1.59 16 8 N -0.54 -12.54 4.81 -896.37 -4.31 -16.85 16 9 C 0.07 1.78 5.27 86.30 0.46 2.24 16 10 C -0.09 -2.80 4.47 30.59 0.14 -2.67 16 11 C -0.07 -2.71 5.67 71.98 0.41 -2.30 16 12 S -0.22 -10.85 19.41 -56.49 -1.10 -11.95 16 13 C -0.52 -31.48 10.04 67.95 0.68 -30.80 16 14 H 0.05 3.28 8.03 -2.91 -0.02 3.25 16 15 C 0.04 2.21 5.50 84.86 0.47 2.68 16 16 N -0.92 -57.74 13.97 21.65 0.30 -57.44 16 17 Si 0.93 44.93 27.74 68.60 1.90 46.84 16 18 H -0.26 -12.18 7.11 99.48 0.71 -11.47 16 19 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 20 H -0.23 -10.78 6.74 99.48 0.67 -10.11 16 21 C 0.05 1.26 4.71 86.32 0.41 1.67 16 22 C -0.09 -1.94 4.92 30.65 0.15 -1.79 16 23 H 0.05 0.62 6.60 -2.39 -0.02 0.60 16 24 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 25 H 0.05 0.62 6.31 -2.39 -0.02 0.61 16 26 H 0.06 0.59 6.55 -2.39 -0.02 0.57 16 27 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.39 2.22 9.12 -74.06 -0.68 1.54 16 29 H 0.09 0.95 6.46 -2.39 -0.02 0.94 16 30 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.09 1.45 8.12 -2.39 -0.02 1.43 16 32 H 0.03 0.59 7.76 -2.39 -0.02 0.57 16 33 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.03 0.81 8.08 -2.39 -0.02 0.79 16 35 H 0.07 2.16 6.21 -2.39 -0.01 2.15 16 36 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 37 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 38 H 0.06 2.48 8.14 -2.39 -0.02 2.47 16 39 H 0.28 15.92 8.31 -92.71 -0.77 15.15 16 40 H 0.08 2.02 5.81 -2.39 -0.01 2.01 16 41 H 0.02 0.65 7.76 -2.39 -0.02 0.63 16 42 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.07 1.61 7.75 -2.39 -0.02 1.59 16 Total: -1.00 -72.24 343.60 -1.18 -73.42 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: 0.27 Total: 13.18 kcal Atomic # 6 Polarization: -31.50 SS G_CDS: 4.84 Total: -26.66 kcal Atomic # 7 Polarization: -70.28 SS G_CDS: -4.01 Total: -74.29 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: -3.10 Total: -20.54 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.90 Total: 46.84 kcal Atomic # 16 Polarization: -10.85 SS G_CDS: -1.10 Total: -11.95 kcal Total: -72.24 -1.18 -73.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618551059.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.090 kcal (2) G-P(sol) polarization free energy of solvation -72.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds