Wall clock time and date at job start Tue Mar 31 2020 06:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21248 * 120.00076 * 2 1 4 4 C 1.47172 * 119.99901 * 180.02562 * 2 1 3 5 5 C 1.39866 * 120.16949 * 359.72614 * 4 2 1 6 6 C 1.37870 * 119.82217 * 179.72096 * 5 4 2 7 7 C 1.38426 * 120.16991 * 0.55265 * 6 5 4 8 8 C 1.38375 * 120.35097 * 359.72085 * 7 6 5 9 9 C 1.50703 * 119.91768 * 180.02562 * 8 7 6 10 10 N 1.46901 * 109.47306 * 269.98145 * 9 8 7 11 11 C 1.47898 * 110.99704 * 69.87252 * 10 9 8 12 12 C 1.53993 * 107.05425 * 214.15721 * 11 10 9 13 13 C 1.54593 * 105.14110 * 1.22459 * 12 11 10 14 14 O 1.42908 * 110.72381 * 263.42056 * 13 12 11 15 15 C 1.50706 * 110.72571 * 140.31956 * 13 12 11 16 16 H 1.08001 * 119.99535 * 241.45875 * 15 13 12 17 17 C 1.37878 * 120.00101 * 61.44932 * 15 13 12 18 18 N 1.31516 * 120.00047 * 0.02562 * 17 15 13 19 19 Si 1.86794 * 119.99839 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47146 * 60.00508 * 19 17 15 21 21 H 1.48502 * 109.47249 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47586 * 300.00397 * 19 17 15 23 23 C 1.48525 * 110.99598 * 312.47649 * 10 9 8 24 24 C 1.37911 * 120.17354 * 0.02562 * 8 7 6 25 25 H 1.09002 * 109.47152 * 269.99644 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.99744 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.99725 * 1 2 3 28 28 H 1.08004 * 120.09074 * 359.97438 * 5 4 2 29 29 H 1.08000 * 119.91202 * 180.25638 * 6 5 4 30 30 H 1.08001 * 119.82334 * 179.74722 * 7 6 5 31 31 H 1.09005 * 109.46612 * 29.98065 * 9 8 7 32 32 H 1.08997 * 109.47381 * 149.97398 * 9 8 7 33 33 H 1.09000 * 109.91915 * 333.50270 * 11 10 9 34 34 H 1.08994 * 109.91927 * 94.80556 * 11 10 9 35 35 H 1.09005 * 110.31183 * 120.14372 * 12 11 10 36 36 H 1.09006 * 110.31019 * 242.20958 * 12 11 10 37 37 H 0.96701 * 113.99839 * 298.54959 * 14 13 12 38 38 H 0.96994 * 119.99867 * 179.97438 * 18 17 15 39 39 H 1.09002 * 110.66554 * 278.15015 * 23 10 9 40 40 H 1.08994 * 110.67549 * 41.28819 * 23 10 9 41 41 H 1.08000 * 120.09063 * 179.97438 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2429 -1.2746 -0.0006 5 6 1.5471 -2.4879 0.0047 6 6 2.2436 -3.6777 -0.0017 7 6 3.6279 -3.6735 -0.0018 8 6 4.3234 -2.4772 -0.0012 9 6 5.8305 -2.4840 -0.0018 10 7 6.3207 -2.4868 1.3829 11 6 6.0439 -3.7822 2.0406 12 6 5.7520 -3.4831 3.5227 13 6 5.8499 -1.9456 3.6512 14 8 7.1437 -1.5585 4.1186 15 6 4.7747 -1.4173 4.5656 16 1 4.0359 -0.7262 4.1874 17 6 4.7342 -1.8163 5.8847 18 7 5.6341 -2.6575 6.3452 19 14 3.4011 -1.1619 7.0178 20 1 2.0682 -1.5442 6.4863 21 1 3.5775 -1.7390 8.3747 22 1 3.4980 0.3180 7.0934 23 6 5.6203 -1.4612 2.1975 24 6 3.6412 -1.2787 -0.0001 25 1 -0.3633 -0.0001 1.0277 26 1 -0.3633 -0.8900 -0.5139 27 1 -0.3633 0.8900 -0.5138 28 1 0.4671 -2.4928 0.0096 29 1 1.7078 -4.6154 -0.0019 30 1 4.1679 -4.6088 -0.0027 31 1 6.1895 -3.3755 -0.5162 32 1 6.1976 -1.5956 -0.5156 33 1 5.1766 -4.2549 1.5795 34 1 6.9134 -4.4342 1.9576 35 1 4.7502 -3.8218 3.7870 36 1 6.4939 -3.9654 4.1593 37 1 7.3646 -1.9029 4.9948 38 1 5.6058 -2.9379 7.2733 39 1 6.0660 -0.4783 2.0447 40 1 4.5563 -1.4432 1.9616 41 1 4.1854 -0.3459 0.0008 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000646032835.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:45 Heat of formation + Delta-G solvation = -52.212151 kcal Electronic energy + Delta-G solvation = -23696.932292 eV Core-core repulsion = 20348.823721 eV Total energy + Delta-G solvation = -3348.108571 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.24762 -38.90024 -37.51790 -34.90696 -32.24775 -32.07134 -31.35433 -29.96759 -28.78140 -27.98555 -25.61310 -24.19863 -23.35291 -21.83648 -20.19552 -19.60139 -19.03830 -17.01424 -16.98516 -15.72761 -15.72161 -15.12904 -15.09547 -14.86819 -14.63768 -14.21346 -14.19570 -13.67871 -13.35749 -13.16514 -12.73062 -12.40602 -12.24611 -11.98083 -11.89926 -11.79785 -11.49285 -11.25980 -11.04965 -10.99589 -10.80357 -10.62208 -10.45597 -10.31877 -9.77913 -9.73571 -9.11526 -8.85996 -8.70680 -8.55424 -8.06730 -7.71988 -6.17593 -4.25116 0.71649 1.40299 2.44788 3.24596 3.29384 3.33120 3.82181 4.03565 4.31967 4.66935 4.83886 4.88216 4.93132 5.08605 5.11041 5.22588 5.30211 5.32152 5.40533 5.57886 5.73764 5.78739 5.89565 5.92473 6.02179 6.06758 6.09510 6.21958 6.31928 6.40329 6.51052 6.59023 6.65906 6.91683 6.93840 7.07684 7.41849 7.53447 7.53970 7.57019 7.69203 7.85424 8.23256 8.77063 9.43352 9.59696 10.89490 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013172 B = 0.006463 C = 0.005135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.277812 B = 4331.519080 C = 5451.018057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.395 3.605 3 O -0.458 6.458 4 C -0.175 4.175 5 C -0.077 4.077 6 C -0.134 4.134 7 C -0.077 4.077 8 C -0.123 4.123 9 C 0.080 3.920 10 N -0.502 5.502 11 C 0.027 3.973 12 C -0.127 4.127 13 C 0.258 3.742 14 O -0.581 6.581 15 C -0.535 4.535 16 H 0.058 0.942 17 C 0.072 3.928 18 N -0.895 5.895 19 Si 0.896 3.104 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.275 1.275 23 C 0.043 3.957 24 C -0.041 4.041 25 H 0.098 0.902 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.129 0.871 29 H 0.126 0.874 30 H 0.125 0.875 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.037 0.963 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.376 0.624 38 H 0.266 0.734 39 H 0.070 0.930 40 H 0.058 0.942 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.320 -3.521 -12.946 15.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.273 3.727 3 O -0.334 6.334 4 C -0.176 4.176 5 C -0.095 4.095 6 C -0.152 4.152 7 C -0.095 4.095 8 C -0.125 4.125 9 C -0.049 4.049 10 N -0.223 5.223 11 C -0.101 4.101 12 C -0.165 4.165 13 C 0.217 3.783 14 O -0.388 6.388 15 C -0.573 4.573 16 H 0.076 0.924 17 C -0.130 4.130 18 N -0.535 5.535 19 Si 0.723 3.277 20 H -0.202 1.202 21 H -0.211 1.211 22 H -0.200 1.200 23 C -0.084 4.084 24 C -0.060 4.060 25 H 0.116 0.884 26 H 0.103 0.897 27 H 0.104 0.896 28 H 0.147 0.853 29 H 0.144 0.856 30 H 0.143 0.857 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.055 0.945 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.226 0.774 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.076 0.924 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.329 -2.658 -13.388 15.492 hybrid contribution -1.784 -0.407 1.377 2.290 sum -9.113 -3.066 -12.011 15.385 Atomic orbital electron populations 1.22231 0.93998 1.04562 1.04868 1.22493 0.91583 0.87727 0.70899 1.90543 1.72120 1.34322 1.36371 1.20465 0.94546 0.94737 1.07876 1.21380 0.99776 0.91584 0.96778 1.21073 0.94290 0.98020 1.01847 1.21351 0.94284 0.97710 0.96186 1.20706 0.98454 0.92944 1.00380 1.21455 0.87102 1.02912 0.93405 1.65175 1.52014 1.05025 1.00091 1.23053 0.98580 0.91492 0.96978 1.22893 1.01159 1.00713 0.91781 1.19312 0.82140 0.88420 0.88410 1.86146 1.35924 1.78052 1.38717 1.21562 1.12836 1.27716 0.95224 0.92391 1.24972 0.95910 0.94174 0.97977 1.69724 1.34964 1.32771 1.15995 0.86592 0.81974 0.79500 0.79587 1.20243 1.21114 1.20023 1.23427 0.96247 0.94946 0.93747 1.21352 0.92987 0.98402 0.93299 0.88370 0.89652 0.89578 0.85288 0.85594 0.85683 0.90399 0.90062 0.94524 0.91896 0.92292 0.91605 0.77447 0.92373 0.91165 0.92404 0.84960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.85 9.75 36.01 0.35 -1.49 16 2 C 0.39 5.50 7.23 -30.68 -0.22 5.28 16 3 O -0.46 -8.03 17.09 5.58 0.10 -7.93 16 4 C -0.18 -2.50 5.87 -105.06 -0.62 -3.12 16 5 C -0.08 -0.91 9.36 -39.11 -0.37 -1.27 16 6 C -0.13 -1.59 10.03 -39.65 -0.40 -1.99 16 7 C -0.08 -1.02 8.18 -39.46 -0.32 -1.34 16 8 C -0.12 -1.85 3.96 -104.69 -0.41 -2.27 16 9 C 0.08 1.23 5.69 -4.97 -0.03 1.20 16 10 N -0.50 -9.80 5.54 -231.90 -1.28 -11.09 16 11 C 0.03 0.51 6.46 -2.76 -0.02 0.50 16 12 C -0.13 -2.96 5.26 -25.38 -0.13 -3.09 16 13 C 0.26 6.56 0.95 -89.91 -0.09 6.48 16 14 O -0.58 -15.72 13.10 -35.23 -0.46 -16.18 16 15 C -0.53 -14.72 8.14 -34.44 -0.28 -15.00 16 16 H 0.06 1.61 7.78 -52.49 -0.41 1.20 16 17 C 0.07 1.94 5.28 -17.82 -0.09 1.85 16 18 N -0.90 -24.25 11.00 55.43 0.61 -23.64 16 19 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 23 C 0.04 0.97 5.20 -1.90 -0.01 0.96 16 24 C -0.04 -0.66 7.03 -39.10 -0.27 -0.93 16 25 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.08 0.57 6.48 -51.93 -0.34 0.24 16 27 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.13 1.09 6.37 -52.48 -0.33 0.76 16 29 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 30 H 0.13 1.47 7.16 -52.49 -0.38 1.10 16 31 H 0.08 1.04 8.02 -51.93 -0.42 0.62 16 32 H 0.08 1.19 8.08 -51.93 -0.42 0.77 16 33 H 0.04 0.63 4.85 -51.93 -0.25 0.38 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.06 1.45 7.84 -51.93 -0.41 1.04 16 36 H 0.07 1.62 7.99 -51.93 -0.41 1.20 16 37 H 0.38 10.22 7.46 45.56 0.34 10.56 16 38 H 0.27 6.92 8.31 -40.82 -0.34 6.59 16 39 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 40 H 0.06 1.28 4.75 -51.93 -0.25 1.04 16 41 H 0.13 2.21 7.64 -52.49 -0.40 1.81 16 LS Contribution 329.32 15.07 4.96 4.96 Total: -1.00 -30.79 329.32 -8.93 -39.72 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -4.92 Total: 12.35 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: -2.91 Total: -14.25 kcal Atomic # 7 Polarization: -34.05 SS G_CDS: -0.67 Total: -34.72 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: -0.37 Total: -24.11 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.79 -8.93 -39.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000646032835.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.490 kcal (2) G-P(sol) polarization free energy of solvation -30.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds