Wall clock time and date at job start Tue Mar 31 2020 06:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21248 * 120.00076 * 2 1 4 4 C 1.47172 * 119.99901 * 180.02562 * 2 1 3 5 5 C 1.39866 * 120.16949 * 359.72614 * 4 2 1 6 6 C 1.37870 * 119.82217 * 179.72096 * 5 4 2 7 7 C 1.38426 * 120.16991 * 0.55265 * 6 5 4 8 8 C 1.38375 * 120.35097 * 359.72085 * 7 6 5 9 9 C 1.50703 * 119.91768 * 180.02562 * 8 7 6 10 10 N 1.46901 * 109.47306 * 269.98145 * 9 8 7 11 11 C 1.47898 * 110.99704 * 69.87252 * 10 9 8 12 12 C 1.53993 * 107.05425 * 214.15721 * 11 10 9 13 13 C 1.54593 * 105.14110 * 1.22459 * 12 11 10 14 14 O 1.42908 * 110.72381 * 263.42056 * 13 12 11 15 15 C 1.50706 * 110.72571 * 140.31956 * 13 12 11 16 16 H 1.08001 * 119.99535 * 241.45875 * 15 13 12 17 17 C 1.37878 * 120.00101 * 61.44932 * 15 13 12 18 18 N 1.31516 * 120.00047 * 0.02562 * 17 15 13 19 19 Si 1.86794 * 119.99839 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47146 * 60.00508 * 19 17 15 21 21 H 1.48502 * 109.47249 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47586 * 300.00397 * 19 17 15 23 23 C 1.48525 * 110.99598 * 312.47649 * 10 9 8 24 24 C 1.37911 * 120.17354 * 0.02562 * 8 7 6 25 25 H 1.09002 * 109.47152 * 269.99644 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.99744 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.99725 * 1 2 3 28 28 H 1.08004 * 120.09074 * 359.97438 * 5 4 2 29 29 H 1.08000 * 119.91202 * 180.25638 * 6 5 4 30 30 H 1.08001 * 119.82334 * 179.74722 * 7 6 5 31 31 H 1.09005 * 109.46612 * 29.98065 * 9 8 7 32 32 H 1.08997 * 109.47381 * 149.97398 * 9 8 7 33 33 H 1.09000 * 109.91915 * 333.50270 * 11 10 9 34 34 H 1.08994 * 109.91927 * 94.80556 * 11 10 9 35 35 H 1.09005 * 110.31183 * 120.14372 * 12 11 10 36 36 H 1.09006 * 110.31019 * 242.20958 * 12 11 10 37 37 H 0.96701 * 113.99839 * 298.54959 * 14 13 12 38 38 H 0.96994 * 119.99867 * 179.97438 * 18 17 15 39 39 H 1.09002 * 110.66554 * 278.15015 * 23 10 9 40 40 H 1.08994 * 110.67549 * 41.28819 * 23 10 9 41 41 H 1.08000 * 120.09063 * 179.97438 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2429 -1.2746 -0.0006 5 6 1.5471 -2.4879 0.0047 6 6 2.2436 -3.6777 -0.0017 7 6 3.6279 -3.6735 -0.0018 8 6 4.3234 -2.4772 -0.0012 9 6 5.8305 -2.4840 -0.0018 10 7 6.3207 -2.4868 1.3829 11 6 6.0439 -3.7822 2.0406 12 6 5.7520 -3.4831 3.5227 13 6 5.8499 -1.9456 3.6512 14 8 7.1437 -1.5585 4.1186 15 6 4.7747 -1.4173 4.5656 16 1 4.0359 -0.7262 4.1874 17 6 4.7342 -1.8163 5.8847 18 7 5.6341 -2.6575 6.3452 19 14 3.4011 -1.1619 7.0178 20 1 2.0682 -1.5442 6.4863 21 1 3.5775 -1.7390 8.3747 22 1 3.4980 0.3180 7.0934 23 6 5.6203 -1.4612 2.1975 24 6 3.6412 -1.2787 -0.0001 25 1 -0.3633 -0.0001 1.0277 26 1 -0.3633 -0.8900 -0.5139 27 1 -0.3633 0.8900 -0.5138 28 1 0.4671 -2.4928 0.0096 29 1 1.7078 -4.6154 -0.0019 30 1 4.1679 -4.6088 -0.0027 31 1 6.1895 -3.3755 -0.5162 32 1 6.1976 -1.5956 -0.5156 33 1 5.1766 -4.2549 1.5795 34 1 6.9134 -4.4342 1.9576 35 1 4.7502 -3.8218 3.7870 36 1 6.4939 -3.9654 4.1593 37 1 7.3646 -1.9029 4.9948 38 1 5.6058 -2.9379 7.2733 39 1 6.0660 -0.4783 2.0447 40 1 4.5563 -1.4432 1.9616 41 1 4.1854 -0.3459 0.0008 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000646032835.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:44 Heat of formation + Delta-G solvation = -74.125701 kcal Electronic energy + Delta-G solvation = -23697.882535 eV Core-core repulsion = 20348.823721 eV Total energy + Delta-G solvation = -3349.058814 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.41488 -40.26109 -38.92197 -36.65122 -34.19426 -33.54158 -32.45878 -31.19101 -30.03387 -29.75006 -27.29175 -25.67651 -24.57154 -22.97887 -21.67533 -21.43015 -20.25233 -19.04991 -18.04126 -17.05464 -16.97650 -16.77416 -16.54591 -16.32586 -15.96231 -15.79279 -15.34421 -15.12554 -14.72138 -14.64590 -14.21647 -13.68231 -13.56107 -13.25987 -13.22022 -13.00243 -12.95462 -12.86082 -12.73874 -12.55921 -12.34371 -12.22411 -12.15363 -12.11412 -11.62634 -11.08144 -10.81527 -10.61995 -10.13625 -9.91852 -9.76512 -9.26083 -8.23701 -6.39391 -0.33346 0.36690 1.35919 1.38549 1.41193 1.45870 2.35253 2.77991 3.00292 3.07682 3.25284 3.75160 3.86403 3.96007 4.04526 4.08734 4.12978 4.17566 4.34761 4.40028 4.47386 4.49585 4.63527 4.68602 4.74347 4.81053 4.88926 4.90945 5.02275 5.08064 5.10255 5.23358 5.31653 5.42877 5.45861 5.51804 5.56694 5.75069 5.89778 5.93819 6.14258 6.28185 6.50867 6.65050 7.32007 7.46737 8.81639 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013172 B = 0.006463 C = 0.005135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.277812 B = 4331.519080 C = 5451.018057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.389 3.611 3 O -0.511 6.511 4 C -0.196 4.196 5 C -0.065 4.065 6 C -0.132 4.132 7 C -0.082 4.082 8 C -0.138 4.138 9 C 0.080 3.920 10 N -0.511 5.511 11 C 0.035 3.965 12 C -0.116 4.116 13 C 0.239 3.761 14 O -0.592 6.592 15 C -0.563 4.563 16 H 0.043 0.957 17 C 0.034 3.966 18 N -0.908 5.908 19 Si 0.953 3.047 20 H -0.269 1.269 21 H -0.275 1.275 22 H -0.279 1.279 23 C 0.056 3.944 24 C -0.069 4.069 25 H 0.109 0.891 26 H 0.119 0.881 27 H 0.093 0.907 28 H 0.170 0.830 29 H 0.163 0.837 30 H 0.145 0.855 31 H 0.106 0.894 32 H 0.080 0.920 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.042 0.958 36 H 0.047 0.953 37 H 0.371 0.629 38 H 0.270 0.730 39 H 0.048 0.952 40 H 0.059 0.941 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.722 -5.652 -13.717 18.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.271 3.729 3 O -0.390 6.390 4 C -0.197 4.197 5 C -0.083 4.083 6 C -0.149 4.149 7 C -0.101 4.101 8 C -0.140 4.140 9 C -0.048 4.048 10 N -0.233 5.233 11 C -0.092 4.092 12 C -0.155 4.155 13 C 0.199 3.801 14 O -0.400 6.400 15 C -0.601 4.601 16 H 0.061 0.939 17 C -0.167 4.167 18 N -0.547 5.547 19 Si 0.778 3.222 20 H -0.194 1.194 21 H -0.200 1.200 22 H -0.205 1.205 23 C -0.071 4.071 24 C -0.088 4.088 25 H 0.128 0.872 26 H 0.137 0.863 27 H 0.111 0.889 28 H 0.188 0.812 29 H 0.181 0.819 30 H 0.163 0.837 31 H 0.124 0.876 32 H 0.098 0.902 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.220 0.780 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -9.740 -4.812 -14.179 17.862 hybrid contribution -1.043 0.241 1.585 1.912 sum -10.782 -4.571 -12.594 17.198 Atomic orbital electron populations 1.22268 0.89859 1.06641 1.06070 1.23290 0.93874 0.86863 0.68915 1.90525 1.73558 1.35861 1.39058 1.20748 0.94109 0.96274 1.08562 1.21849 1.01791 0.90320 0.94387 1.21558 0.93828 0.99542 1.00001 1.21665 0.95427 0.97510 0.95463 1.20628 0.97962 0.93496 1.01884 1.21520 0.87983 1.04314 0.90943 1.65082 1.52356 1.04218 1.01659 1.22990 1.00389 0.91662 0.94155 1.22649 0.99526 0.98791 0.94488 1.19594 0.80870 0.90087 0.89569 1.86142 1.36992 1.78443 1.38378 1.21762 1.13541 1.28302 0.96490 0.93872 1.25627 0.97820 0.94255 0.98986 1.69800 1.35689 1.32870 1.16335 0.85698 0.79835 0.78514 0.78128 1.19379 1.20015 1.20486 1.23154 0.96410 0.94815 0.92735 1.21319 0.94251 0.97859 0.95362 0.87230 0.86300 0.88855 0.81246 0.81913 0.83722 0.87553 0.90163 0.91921 0.90335 0.93900 0.93422 0.78044 0.92082 0.93336 0.92359 0.87724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.04 9.75 71.24 0.69 -2.35 16 2 C 0.39 10.73 7.23 28.04 0.20 10.94 16 3 O -0.51 -18.83 17.09 -2.93 -0.05 -18.88 16 4 C -0.20 -5.43 5.87 -20.15 -0.12 -5.55 16 5 C -0.07 -1.31 9.36 22.58 0.21 -1.10 16 6 C -0.13 -2.56 10.03 22.23 0.22 -2.34 16 7 C -0.08 -1.94 8.18 22.35 0.18 -1.76 16 8 C -0.14 -4.04 3.96 -19.91 -0.08 -4.12 16 9 C 0.08 2.41 5.69 85.56 0.49 2.90 16 10 N -0.51 -19.87 5.54 -887.60 -4.91 -24.79 16 11 C 0.04 1.32 6.46 86.45 0.56 1.88 16 12 C -0.12 -5.44 5.26 31.47 0.17 -5.28 16 13 C 0.24 12.50 0.95 -10.33 -0.01 12.49 16 14 O -0.59 -33.15 13.10 -148.98 -1.95 -35.10 16 15 C -0.56 -31.78 8.14 25.60 0.21 -31.57 16 16 H 0.04 2.49 7.78 -2.91 -0.02 2.47 16 17 C 0.03 1.86 5.28 84.65 0.45 2.30 16 18 N -0.91 -49.59 11.00 21.45 0.24 -49.35 16 19 Si 0.95 43.21 29.54 68.60 2.03 45.24 16 20 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 21 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 22 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 23 C 0.06 2.62 5.20 86.65 0.45 3.07 16 24 C -0.07 -2.23 7.03 22.58 0.16 -2.07 16 25 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.12 1.05 6.48 -2.39 -0.02 1.04 16 27 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 28 H 0.17 1.93 6.37 -2.91 -0.02 1.91 16 29 H 0.16 2.00 8.06 -2.91 -0.02 1.97 16 30 H 0.15 2.80 7.16 -2.91 -0.02 2.78 16 31 H 0.11 2.58 8.02 -2.38 -0.02 2.56 16 32 H 0.08 2.39 8.08 -2.39 -0.02 2.37 16 33 H 0.06 2.00 4.85 -2.39 -0.01 1.99 16 34 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 35 H 0.04 2.10 7.84 -2.38 -0.02 2.08 16 36 H 0.05 2.36 7.99 -2.38 -0.02 2.35 16 37 H 0.37 20.89 7.46 -74.06 -0.55 20.33 16 38 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 39 H 0.05 2.40 8.14 -2.39 -0.02 2.38 16 40 H 0.06 2.69 4.75 -2.39 -0.01 2.68 16 41 H 0.10 3.85 7.64 -2.91 -0.02 3.83 16 Total: -1.00 -69.93 329.32 -0.37 -70.30 By element: Atomic # 1 Polarization: 34.65 SS G_CDS: 0.50 Total: 35.14 kcal Atomic # 6 Polarization: -26.34 SS G_CDS: 3.78 Total: -22.56 kcal Atomic # 7 Polarization: -69.46 SS G_CDS: -4.68 Total: -74.14 kcal Atomic # 8 Polarization: -51.98 SS G_CDS: -2.00 Total: -53.98 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -69.93 -0.37 -70.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000646032835.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.824 kcal (2) G-P(sol) polarization free energy of solvation -69.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds