Wall clock time and date at job start Tue Mar 31 2020 06:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21302 * 119.99452 * 2 1 4 4 C 1.46845 * 119.99894 * 179.97438 * 2 1 3 5 5 C 1.40058 * 120.09657 * 180.02562 * 4 2 1 6 6 C 1.37086 * 119.89947 * 180.30425 * 5 4 2 7 7 C 1.39210 * 120.09623 * 359.44455 * 6 5 4 8 8 N 1.39320 * 119.89775 * 180.28224 * 7 6 5 9 9 C 1.34776 * 120.00106 * 33.74712 * 8 7 6 10 10 O 1.21272 * 119.99648 * 5.27997 * 9 8 7 11 11 C 1.50692 * 119.99951 * 185.27599 * 9 8 7 12 12 C 1.52995 * 109.47260 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47605 * 180.02562 * 12 11 9 14 14 C 1.53001 * 109.47306 * 180.02562 * 13 12 11 15 15 C 1.50706 * 109.46831 * 180.02562 * 14 13 12 16 16 H 1.07991 * 120.00044 * 359.97438 * 15 14 13 17 17 C 1.37882 * 119.99643 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99981 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99953 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47305 * 89.99390 * 19 17 15 21 21 H 1.48499 * 109.46902 * 209.99811 * 19 17 15 22 22 H 1.48506 * 109.46620 * 329.99510 * 19 17 15 23 23 C 1.39218 * 120.20448 * 0.55270 * 7 6 5 24 24 C 1.37088 * 120.10079 * 359.73436 * 23 7 6 25 25 H 1.09005 * 109.47197 * 269.99980 * 1 2 3 26 26 H 1.08999 * 109.47723 * 29.99941 * 1 2 3 27 27 H 1.09006 * 109.46856 * 150.00516 * 1 2 3 28 28 H 1.08008 * 120.05299 * 0.02606 * 5 4 2 29 29 H 1.07995 * 119.94893 * 179.70464 * 6 5 4 30 30 H 0.97007 * 119.99418 * 213.74314 * 8 7 6 31 31 H 1.09007 * 109.47440 * 299.99892 * 11 9 8 32 32 H 1.08999 * 109.47430 * 60.00112 * 11 9 8 33 33 H 1.08997 * 109.47414 * 300.00316 * 12 11 9 34 34 H 1.08999 * 109.47174 * 60.00102 * 12 11 9 35 35 H 1.09007 * 109.47229 * 300.00037 * 13 12 11 36 36 H 1.08999 * 109.47295 * 60.00045 * 13 12 11 37 37 H 1.09000 * 109.46860 * 299.99313 * 14 13 12 38 38 H 1.08999 * 109.47649 * 59.99947 * 14 13 12 39 39 H 0.97001 * 119.99910 * 180.02562 * 18 17 15 40 40 H 1.07996 * 119.95226 * 179.69700 * 23 7 6 41 41 H 1.07997 * 120.05581 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0506 0.0000 4 6 2.2412 -1.2717 0.0006 5 6 3.6418 -1.2741 0.0011 6 6 4.3231 -2.4637 -0.0047 7 6 3.6250 -3.6680 0.0006 8 7 4.3216 -4.8746 0.0006 9 6 5.5015 -4.9714 0.6448 10 8 5.9108 -4.0393 1.3038 11 6 6.3119 -6.2381 0.5463 12 6 7.5967 -6.0863 1.3630 13 6 8.4199 -7.3720 1.2625 14 6 9.7045 -7.2204 2.0798 15 6 10.5155 -8.4866 1.9802 16 1 10.1511 -9.3166 1.3932 17 6 11.7225 -8.5859 2.6395 18 7 12.1660 -7.5753 3.3548 19 14 12.7275 -10.1556 2.5167 20 1 13.6510 -10.0628 1.3575 21 1 13.5141 -10.3385 3.7629 22 1 11.8162 -11.3136 2.3321 23 6 2.2328 -3.6706 0.0002 24 6 1.5431 -2.4858 0.0000 25 1 -0.3634 0.0000 1.0277 26 1 -0.3634 0.8899 -0.5138 27 1 -0.3633 -0.8901 -0.5138 28 1 4.1843 -0.3402 0.0015 29 1 5.4031 -2.4664 -0.0091 30 1 3.9573 -5.6449 -0.4630 31 1 5.7298 -7.0732 0.9360 32 1 6.5652 -6.4272 -0.4968 33 1 8.1787 -5.2513 0.9730 34 1 7.3439 -5.8970 2.4062 35 1 7.8382 -8.2074 1.6524 36 1 8.6728 -7.5609 0.2192 37 1 10.2864 -6.3851 1.6902 38 1 9.4513 -7.0317 3.1230 39 1 13.0153 -7.6450 3.8183 40 1 1.6953 -4.6073 -0.0007 41 1 0.4631 -2.4887 -0.0008 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000672443440.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:18 Heat of formation + Delta-G solvation = -71.531601 kcal Electronic energy + Delta-G solvation = -21073.567786 eV Core-core repulsion = 17724.621460 eV Total energy + Delta-G solvation = -3348.946325 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.94411 -39.83035 -38.23180 -35.23770 -34.86590 -32.72070 -31.97373 -31.11552 -30.02497 -28.83678 -25.90313 -24.07779 -23.06469 -22.29498 -20.55868 -20.11521 -20.03333 -18.18980 -17.12784 -16.88274 -16.17901 -16.10421 -15.61141 -15.30128 -14.86431 -14.56212 -14.43058 -14.12854 -14.06414 -13.77335 -13.15328 -13.12621 -12.65451 -12.58939 -12.51041 -12.26952 -11.78440 -11.66330 -11.54680 -11.02320 -10.67341 -10.60300 -10.54362 -10.47499 -10.18988 -9.93987 -9.66387 -9.37732 -9.27375 -9.02334 -8.47391 -8.32855 -5.97478 -4.00246 0.28585 1.07788 1.97994 2.51340 2.76162 3.32424 3.38618 3.41476 3.50666 3.75999 4.35829 4.46463 4.51230 4.62019 4.67314 4.94000 4.96635 5.01777 5.12662 5.18941 5.21617 5.23280 5.37902 5.49517 5.64498 5.71979 5.79276 5.93940 6.04230 6.06270 6.17809 6.20476 6.45927 6.62011 6.76182 6.93651 7.05908 7.15848 7.22283 7.71007 7.86129 7.91034 8.03346 8.44838 9.07380 9.63558 11.13773 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.049574 B = 0.002059 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.673684 B =13595.124770 C =14027.430120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.396 3.604 3 O -0.464 6.464 4 C -0.201 4.201 5 C -0.036 4.036 6 C -0.139 4.139 7 C 0.191 3.809 8 N -0.682 5.682 9 C 0.511 3.489 10 O -0.507 6.507 11 C -0.137 4.137 12 C -0.105 4.105 13 C -0.110 4.110 14 C 0.019 3.981 15 C -0.521 4.521 16 H 0.054 0.946 17 C 0.055 3.945 18 N -0.895 5.895 19 Si 0.892 3.108 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C -0.167 4.167 24 C -0.051 4.051 25 H 0.097 0.903 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.136 0.864 29 H 0.142 0.858 30 H 0.414 0.586 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.016 0.984 38 H 0.016 0.984 39 H 0.260 0.740 40 H 0.132 0.868 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.664 8.607 -10.011 29.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.275 3.725 3 O -0.340 6.340 4 C -0.203 4.203 5 C -0.055 4.055 6 C -0.159 4.159 7 C 0.095 3.905 8 N -0.327 5.327 9 C 0.300 3.700 10 O -0.380 6.380 11 C -0.177 4.177 12 C -0.143 4.143 13 C -0.148 4.148 14 C -0.018 4.018 15 C -0.560 4.560 16 H 0.073 0.927 17 C -0.146 4.146 18 N -0.534 5.534 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.187 4.187 24 C -0.069 4.069 25 H 0.115 0.885 26 H 0.105 0.895 27 H 0.104 0.896 28 H 0.154 0.846 29 H 0.160 0.840 30 H 0.250 0.750 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.070 0.930 40 H 0.150 0.850 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -25.814 9.821 -9.407 29.177 hybrid contribution 0.375 -1.428 -0.215 1.492 sum -25.439 8.393 -9.622 28.463 Atomic orbital electron populations 1.22238 0.93937 1.04805 1.04762 1.22387 0.91584 0.87646 0.70841 1.90558 1.72157 1.34387 1.36913 1.20457 0.94559 0.94746 1.10516 1.21199 0.92971 0.98483 0.92828 1.21094 1.01617 0.90617 1.02582 1.18107 0.91068 0.86325 0.95029 1.43779 1.22423 1.12283 1.54215 1.21440 0.80110 0.90931 0.77471 1.90747 1.68842 1.40254 1.38154 1.21843 0.97994 0.94001 1.03871 1.21488 0.93020 1.00179 0.99616 1.21651 0.98130 0.94439 1.00565 1.19099 0.90692 0.96990 0.94986 1.21271 1.04242 1.00406 1.30052 0.92741 1.25049 0.97784 0.96373 0.95388 1.69972 1.20656 1.30721 1.32036 0.86605 0.80250 0.83746 0.77438 1.20698 1.21240 1.19931 1.20755 0.92048 0.99148 1.06764 1.21099 0.99902 0.90883 0.95047 0.88470 0.89489 0.89560 0.84623 0.84016 0.75001 0.88635 0.88514 0.91639 0.91633 0.93389 0.93378 0.96571 0.96560 0.93013 0.84980 0.84659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.98 9.75 36.01 0.35 -0.62 16 2 C 0.40 3.63 7.22 -30.83 -0.22 3.41 16 3 O -0.46 -5.99 17.08 5.54 0.09 -5.90 16 4 C -0.20 -1.87 5.87 -105.05 -0.62 -2.49 16 5 C -0.04 -0.40 9.57 -39.32 -0.38 -0.77 16 6 C -0.14 -1.63 8.60 -39.64 -0.34 -1.97 16 7 C 0.19 1.91 6.27 -83.73 -0.52 1.38 16 8 N -0.68 -6.13 5.31 -9.85 -0.05 -6.18 16 9 C 0.51 6.36 7.55 -10.99 -0.08 6.28 16 10 O -0.51 -8.44 13.67 5.56 0.08 -8.36 16 11 C -0.14 -1.60 5.70 -27.89 -0.16 -1.76 16 12 C -0.11 -1.76 4.50 -26.73 -0.12 -1.88 16 13 C -0.11 -2.18 5.15 -26.73 -0.14 -2.32 16 14 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 15 C -0.52 -14.85 9.11 -34.44 -0.31 -15.16 16 16 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 18 N -0.89 -27.33 13.29 55.43 0.74 -26.59 16 19 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 23 C -0.17 -1.23 9.92 -39.64 -0.39 -1.63 16 24 C -0.05 -0.35 9.33 -39.32 -0.37 -0.72 16 25 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.09 0.23 6.45 -51.93 -0.34 -0.11 16 28 H 0.14 1.51 7.64 -52.48 -0.40 1.10 16 29 H 0.14 1.89 6.42 -52.49 -0.34 1.55 16 30 H 0.41 2.17 8.81 -40.82 -0.36 1.81 16 31 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.06 1.17 8.10 -51.93 -0.42 0.75 16 34 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 35 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 41 H 0.14 0.48 6.34 -52.49 -0.33 0.15 16 LS Contribution 350.30 15.07 5.28 5.28 Total: -1.00 -35.62 350.30 -8.38 -44.00 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: -5.95 Total: -2.57 kcal Atomic # 6 Polarization: -12.84 SS G_CDS: -3.54 Total: -16.38 kcal Atomic # 7 Polarization: -33.46 SS G_CDS: 0.68 Total: -32.77 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: 0.17 Total: -14.26 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -35.62 -8.38 -44.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000672443440.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.532 kcal (2) G-P(sol) polarization free energy of solvation -35.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds