Wall clock time and date at job start Tue Mar 31 2020 06:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21302 * 119.99452 * 2 1 4 4 C 1.46845 * 119.99894 * 179.97438 * 2 1 3 5 5 C 1.40058 * 120.09657 * 180.02562 * 4 2 1 6 6 C 1.37086 * 119.89947 * 180.30425 * 5 4 2 7 7 C 1.39210 * 120.09623 * 359.44455 * 6 5 4 8 8 N 1.39320 * 119.89775 * 180.28224 * 7 6 5 9 9 C 1.34776 * 120.00106 * 33.74712 * 8 7 6 10 10 O 1.21272 * 119.99648 * 5.27997 * 9 8 7 11 11 C 1.50692 * 119.99951 * 185.27599 * 9 8 7 12 12 C 1.52995 * 109.47260 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47605 * 180.02562 * 12 11 9 14 14 C 1.53001 * 109.47306 * 180.02562 * 13 12 11 15 15 C 1.50706 * 109.46831 * 180.02562 * 14 13 12 16 16 H 1.07991 * 120.00044 * 359.97438 * 15 14 13 17 17 C 1.37882 * 119.99643 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99981 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99953 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47305 * 89.99390 * 19 17 15 21 21 H 1.48499 * 109.46902 * 209.99811 * 19 17 15 22 22 H 1.48506 * 109.46620 * 329.99510 * 19 17 15 23 23 C 1.39218 * 120.20448 * 0.55270 * 7 6 5 24 24 C 1.37088 * 120.10079 * 359.73436 * 23 7 6 25 25 H 1.09005 * 109.47197 * 269.99980 * 1 2 3 26 26 H 1.08999 * 109.47723 * 29.99941 * 1 2 3 27 27 H 1.09006 * 109.46856 * 150.00516 * 1 2 3 28 28 H 1.08008 * 120.05299 * 0.02606 * 5 4 2 29 29 H 1.07995 * 119.94893 * 179.70464 * 6 5 4 30 30 H 0.97007 * 119.99418 * 213.74314 * 8 7 6 31 31 H 1.09007 * 109.47440 * 299.99892 * 11 9 8 32 32 H 1.08999 * 109.47430 * 60.00112 * 11 9 8 33 33 H 1.08997 * 109.47414 * 300.00316 * 12 11 9 34 34 H 1.08999 * 109.47174 * 60.00102 * 12 11 9 35 35 H 1.09007 * 109.47229 * 300.00037 * 13 12 11 36 36 H 1.08999 * 109.47295 * 60.00045 * 13 12 11 37 37 H 1.09000 * 109.46860 * 299.99313 * 14 13 12 38 38 H 1.08999 * 109.47649 * 59.99947 * 14 13 12 39 39 H 0.97001 * 119.99910 * 180.02562 * 18 17 15 40 40 H 1.07996 * 119.95226 * 179.69700 * 23 7 6 41 41 H 1.07997 * 120.05581 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0506 0.0000 4 6 2.2412 -1.2717 0.0006 5 6 3.6418 -1.2741 0.0011 6 6 4.3231 -2.4637 -0.0047 7 6 3.6250 -3.6680 0.0006 8 7 4.3216 -4.8746 0.0006 9 6 5.5015 -4.9714 0.6448 10 8 5.9108 -4.0393 1.3038 11 6 6.3119 -6.2381 0.5463 12 6 7.5967 -6.0863 1.3630 13 6 8.4199 -7.3720 1.2625 14 6 9.7045 -7.2204 2.0798 15 6 10.5155 -8.4866 1.9802 16 1 10.1511 -9.3166 1.3932 17 6 11.7225 -8.5859 2.6395 18 7 12.1660 -7.5753 3.3548 19 14 12.7275 -10.1556 2.5167 20 1 13.6510 -10.0628 1.3575 21 1 13.5141 -10.3385 3.7629 22 1 11.8162 -11.3136 2.3321 23 6 2.2328 -3.6706 0.0002 24 6 1.5431 -2.4858 0.0000 25 1 -0.3634 0.0000 1.0277 26 1 -0.3634 0.8899 -0.5138 27 1 -0.3633 -0.8901 -0.5138 28 1 4.1843 -0.3402 0.0015 29 1 5.4031 -2.4664 -0.0091 30 1 3.9573 -5.6449 -0.4630 31 1 5.7298 -7.0732 0.9360 32 1 6.5652 -6.4272 -0.4968 33 1 8.1787 -5.2513 0.9730 34 1 7.3439 -5.8970 2.4062 35 1 7.8382 -8.2074 1.6524 36 1 8.6728 -7.5609 0.2192 37 1 10.2864 -6.3851 1.6902 38 1 9.4513 -7.0317 3.1230 39 1 13.0153 -7.6450 3.8183 40 1 1.6953 -4.6073 -0.0007 41 1 0.4631 -2.4887 -0.0008 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000672443440.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:18 Heat of formation + Delta-G solvation = -94.578658 kcal Electronic energy + Delta-G solvation = -21074.567181 eV Core-core repulsion = 17724.621460 eV Total energy + Delta-G solvation = -3349.945720 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.78433 -40.64896 -39.06747 -36.70032 -35.91519 -34.64004 -32.72229 -31.98452 -31.33315 -29.65859 -27.52866 -25.20699 -23.82944 -23.69083 -21.84598 -21.36915 -20.83423 -18.97393 -18.41239 -18.04174 -17.60592 -17.08103 -16.53094 -16.43399 -15.99240 -15.76928 -15.52314 -15.10239 -14.97395 -14.56093 -14.54012 -14.00419 -13.84139 -13.63215 -13.61055 -13.26967 -13.03615 -12.95703 -12.82519 -12.34849 -12.25299 -12.16717 -12.14603 -11.53281 -11.37549 -11.35537 -11.19137 -10.93841 -10.71036 -10.55485 -10.08204 -9.24510 -8.19139 -6.31343 -0.45443 0.38028 1.20193 1.40244 1.42444 1.53468 1.65701 1.96530 2.41604 2.79487 3.13703 3.15289 3.60958 3.80759 3.90230 4.01401 4.13441 4.17401 4.28681 4.37655 4.46292 4.64244 4.67344 4.68112 4.72043 4.82840 4.85968 4.92881 5.09011 5.17366 5.19033 5.23943 5.31830 5.33123 5.38598 5.45716 5.56914 5.77862 5.87741 5.88898 6.24614 6.34533 6.56074 6.87599 7.06789 7.38429 8.93009 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.049574 B = 0.002059 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.673684 B =13595.124770 C =14027.430120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.394 3.606 3 O -0.516 6.516 4 C -0.212 4.212 5 C -0.059 4.059 6 C -0.163 4.163 7 C 0.175 3.825 8 N -0.660 5.660 9 C 0.511 3.489 10 O -0.561 6.561 11 C -0.124 4.124 12 C -0.099 4.099 13 C -0.095 4.095 14 C 0.017 3.983 15 C -0.541 4.541 16 H 0.068 0.932 17 C -0.009 4.009 18 N -0.938 5.938 19 Si 0.970 3.030 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.258 1.258 23 C -0.152 4.152 24 C -0.033 4.033 25 H 0.115 0.885 26 H 0.088 0.912 27 H 0.119 0.881 28 H 0.116 0.884 29 H 0.112 0.888 30 H 0.435 0.565 31 H 0.129 0.871 32 H 0.126 0.874 33 H 0.042 0.958 34 H 0.043 0.957 35 H 0.064 0.936 36 H 0.062 0.938 37 H -0.017 1.017 38 H -0.016 1.016 39 H 0.262 0.738 40 H 0.174 0.826 41 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.274 5.560 -11.480 32.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.276 3.724 3 O -0.396 6.396 4 C -0.213 4.213 5 C -0.078 4.078 6 C -0.183 4.183 7 C 0.079 3.921 8 N -0.307 5.307 9 C 0.301 3.699 10 O -0.438 6.438 11 C -0.164 4.164 12 C -0.137 4.137 13 C -0.133 4.133 14 C -0.020 4.020 15 C -0.579 4.579 16 H 0.086 0.914 17 C -0.206 4.206 18 N -0.579 5.579 19 Si 0.794 3.206 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.182 1.182 23 C -0.172 4.172 24 C -0.052 4.052 25 H 0.133 0.867 26 H 0.106 0.894 27 H 0.137 0.863 28 H 0.134 0.866 29 H 0.130 0.870 30 H 0.276 0.724 31 H 0.147 0.853 32 H 0.144 0.856 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.001 0.999 38 H 0.003 0.997 39 H 0.071 0.929 40 H 0.191 0.809 41 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -29.483 6.732 -10.921 32.153 hybrid contribution 1.466 -0.424 0.250 1.546 sum -28.017 6.308 -10.671 30.637 Atomic orbital electron populations 1.22283 0.89806 1.06540 1.06327 1.23127 0.93759 0.86638 0.68830 1.90546 1.73576 1.35950 1.39532 1.20715 0.93683 0.96436 1.10510 1.21154 0.94497 0.97607 0.94579 1.20943 1.00472 0.92186 1.04732 1.18298 0.92422 0.85638 0.95749 1.43475 1.21173 1.12802 1.53249 1.21557 0.80873 0.90399 0.77022 1.90749 1.70279 1.41995 1.40796 1.21708 0.95445 0.94604 1.04618 1.21273 0.95224 0.97781 0.99423 1.21443 0.95452 0.96362 1.00035 1.19075 0.93505 0.95321 0.94138 1.21767 1.04791 1.01319 1.30015 0.91416 1.26113 0.99324 1.00263 0.94859 1.70136 1.21280 1.33329 1.33131 0.85377 0.78475 0.79217 0.77538 1.19780 1.21051 1.18184 1.21202 0.90559 1.01106 1.04374 1.21605 1.02053 0.89241 0.92261 0.86653 0.89351 0.86269 0.86644 0.87022 0.72410 0.85284 0.85583 0.93950 0.93771 0.91762 0.91907 0.99862 0.99739 0.92903 0.80880 0.79935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.24 9.75 71.24 0.69 -0.55 16 2 C 0.39 6.94 7.22 27.94 0.20 7.14 16 3 O -0.52 -14.09 17.08 -3.10 -0.05 -14.14 16 4 C -0.21 -3.76 5.87 -20.14 -0.12 -3.88 16 5 C -0.06 -1.44 9.57 22.44 0.21 -1.22 16 6 C -0.16 -4.12 8.60 22.23 0.19 -3.93 16 7 C 0.17 3.26 6.27 38.42 0.24 3.50 16 8 N -0.66 -10.45 5.31 -303.47 -1.61 -12.06 16 9 C 0.51 12.41 7.55 87.65 0.66 13.08 16 10 O -0.56 -19.76 13.67 -3.01 -0.04 -19.80 16 11 C -0.12 -2.63 5.70 29.84 0.17 -2.46 16 12 C -0.10 -3.37 4.50 30.59 0.14 -3.23 16 13 C -0.10 -3.74 5.15 30.59 0.16 -3.58 16 14 C 0.02 0.91 4.97 29.85 0.15 1.06 16 15 C -0.54 -31.08 9.11 25.60 0.23 -30.84 16 16 H 0.07 3.62 7.74 -2.92 -0.02 3.60 16 17 C -0.01 -0.50 5.46 84.66 0.46 -0.04 16 18 N -0.94 -59.07 13.29 21.45 0.28 -58.78 16 19 Si 0.97 44.57 29.54 68.60 2.03 46.60 16 20 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 21 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 22 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 23 C -0.15 -1.63 9.92 22.23 0.22 -1.41 16 24 C -0.03 -0.33 9.33 22.44 0.21 -0.12 16 25 H 0.12 0.41 8.14 -2.38 -0.02 0.39 16 26 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.12 -0.03 6.45 -2.38 -0.02 -0.04 16 28 H 0.12 3.07 7.64 -2.91 -0.02 3.05 16 29 H 0.11 3.42 6.42 -2.91 -0.02 3.40 16 30 H 0.44 2.82 8.81 -92.70 -0.82 2.00 16 31 H 0.13 1.94 8.14 -2.38 -0.02 1.92 16 32 H 0.13 1.99 8.14 -2.39 -0.02 1.98 16 33 H 0.04 1.61 8.10 -2.39 -0.02 1.59 16 34 H 0.04 1.67 8.10 -2.39 -0.02 1.65 16 35 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 36 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 37 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 38 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 39 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 40 H 0.17 0.49 8.06 -2.91 -0.02 0.47 16 41 H 0.18 0.06 6.34 -2.91 -0.02 0.04 16 Total: -1.00 -85.37 350.30 4.65 -80.72 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: 0.22 Total: 3.95 kcal Atomic # 6 Polarization: -30.30 SS G_CDS: 3.83 Total: -26.48 kcal Atomic # 7 Polarization: -69.51 SS G_CDS: -1.33 Total: -70.84 kcal Atomic # 8 Polarization: -33.85 SS G_CDS: -0.09 Total: -33.95 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -85.37 4.65 -80.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000672443440.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.856 kcal (2) G-P(sol) polarization free energy of solvation -85.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds