Wall clock time and date at job start Tue Mar 31 2020 05:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46900 * 109.47074 * 2 1 4 4 C 1.46898 * 110.99794 * 298.12816 * 3 2 1 5 5 C 1.50702 * 109.47181 * 292.93152 * 4 3 2 6 6 H 1.08004 * 119.99779 * 354.96158 * 5 4 3 7 7 C 1.37879 * 120.00095 * 174.96230 * 5 4 3 8 8 N 1.31510 * 119.99976 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99909 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46806 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47217 * 119.99512 * 9 7 5 12 12 H 1.48496 * 109.46950 * 240.00150 * 9 7 5 13 13 C 1.46899 * 110.99996 * 62.08039 * 3 2 1 14 14 C 1.50697 * 109.47294 * 66.04530 * 13 3 2 15 15 C 1.34013 * 124.93955 * 90.00293 * 14 13 3 16 16 C 1.46779 * 106.19616 * 180.02562 * 15 14 13 17 17 C 1.39527 * 134.32689 * 180.02562 * 16 15 14 18 18 C 1.36715 * 119.82255 * 180.02562 * 17 16 15 19 19 C 1.38716 * 120.46160 * 359.96195 * 18 17 16 20 20 C 1.38302 * 120.61842 * 0.02562 * 19 18 17 21 21 O 1.35948 * 120.13816 * 180.02562 * 20 19 18 22 22 C 1.42902 * 117.00310 * 359.97438 * 21 20 19 23 23 C 1.39384 * 119.72275 * 359.97438 * 20 19 18 24 24 O 1.34429 * 124.93791 * 269.69827 * 14 13 3 25 25 H 1.09006 * 109.46822 * 59.67179 * 1 2 3 26 26 H 1.08998 * 109.47147 * 179.66598 * 1 2 3 27 27 H 1.08991 * 109.47547 * 299.67009 * 1 2 3 28 28 H 1.08994 * 109.47288 * 239.99831 * 2 1 3 29 29 H 1.08997 * 109.46790 * 119.99813 * 2 1 3 30 30 H 1.08996 * 109.47945 * 52.93446 * 4 3 2 31 31 H 1.09000 * 109.47057 * 172.93625 * 4 3 2 32 32 H 0.97000 * 119.99961 * 180.02562 * 8 7 5 33 33 H 1.09005 * 109.47114 * 186.04805 * 13 3 2 34 34 H 1.09009 * 109.47055 * 306.04736 * 13 3 2 35 35 H 1.07995 * 126.89813 * 359.97328 * 15 14 13 36 36 H 1.08002 * 120.08801 * 359.94256 * 17 16 15 37 37 H 1.08001 * 119.77133 * 179.97438 * 18 17 16 38 38 H 1.08003 * 119.69432 * 179.97438 * 19 18 17 39 39 H 1.09006 * 109.46970 * 299.99640 * 22 21 20 40 40 H 1.09001 * 109.47344 * 59.99705 * 22 21 20 41 41 H 1.08996 * 109.47669 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5856 2.0968 -1.2095 5 6 2.2647 1.4994 -2.4149 6 1 3.0107 0.7289 -2.2879 7 6 1.9336 1.9366 -3.6799 8 7 1.0255 2.8753 -3.8346 9 14 2.7749 1.1956 -5.1742 10 1 3.7505 0.1665 -4.7333 11 1 1.7571 0.5684 -6.0550 12 1 3.4863 2.2633 -5.9218 13 6 1.5897 2.0954 1.2118 14 6 2.2536 1.4804 2.4168 15 6 3.4345 1.8634 2.9215 16 6 3.6853 0.9969 4.0794 17 6 4.7180 0.8898 5.0115 18 6 4.6472 -0.0526 5.9994 19 6 3.5549 -0.9036 6.0826 20 6 2.5207 -0.8136 5.1687 21 8 1.4546 -1.6522 5.2597 22 6 1.4672 -2.6045 6.3251 23 6 2.5756 0.1411 4.1547 24 8 1.7446 0.4717 3.1453 25 1 -0.3633 0.5190 -0.8871 26 1 -0.3633 -1.0276 -0.0060 27 1 -0.3634 0.5086 0.8928 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 0.5050 2.0037 -1.3179 31 1 1.8529 3.1502 -1.1267 32 1 0.7924 3.1826 -4.7246 33 1 1.8729 3.1454 1.1372 34 1 0.5073 2.0173 1.3140 35 1 4.0736 2.6508 2.5503 36 1 5.5716 1.5488 4.9519 37 1 5.4473 -0.1350 6.7202 38 1 3.5120 -1.6438 6.8678 39 1 2.3398 -3.2501 6.2250 40 1 1.5103 -2.0809 7.2801 41 1 0.5611 -3.2089 6.2831 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000768242936.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:49 Heat of formation + Delta-G solvation = 0.666805 kcal Electronic energy + Delta-G solvation = -22755.907748 eV Core-core repulsion = 19410.092181 eV Total energy + Delta-G solvation = -3345.815567 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.32354 -39.57059 -37.37145 -36.81276 -32.80618 -32.30542 -30.58884 -29.97734 -29.08971 -27.73194 -26.81244 -24.81201 -23.24604 -22.78787 -21.51415 -20.99431 -19.36753 -17.98301 -17.45388 -16.41470 -16.34134 -15.93283 -15.58217 -15.30454 -15.01047 -14.72672 -14.64229 -14.02326 -13.39913 -13.24556 -12.95669 -12.69124 -12.39140 -12.37209 -12.07690 -11.84152 -11.67269 -11.42428 -11.36498 -11.29223 -11.08450 -10.94347 -10.69179 -10.55491 -10.05635 -9.88625 -9.59036 -9.24135 -8.47240 -8.40651 -7.79406 -7.28362 -6.04222 -4.05039 0.97872 1.35801 2.53848 2.81861 3.09391 3.30967 3.38662 3.44051 3.69769 4.41775 4.52977 4.67224 4.81311 4.92201 4.93086 5.04324 5.14635 5.25361 5.26968 5.31595 5.39682 5.50033 5.67719 5.83334 5.85277 5.96066 6.04226 6.06703 6.18520 6.23863 6.39837 6.48427 6.51004 6.68325 6.69939 6.92383 7.02972 7.22790 7.39213 7.46903 7.77606 8.01912 8.12607 8.48575 9.03031 9.59180 11.06469 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.025578 B = 0.003538 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.417318 B = 7911.366418 C = 8298.685336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.060 3.940 3 N -0.529 5.529 4 C 0.188 3.812 5 C -0.504 4.504 6 H 0.064 0.936 7 C 0.056 3.944 8 N -0.899 5.899 9 Si 0.897 3.103 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.284 1.284 13 C 0.117 3.883 14 C 0.074 3.926 15 C -0.209 4.209 16 C -0.084 4.084 17 C -0.111 4.111 18 C -0.100 4.100 19 C -0.202 4.202 20 C 0.145 3.855 21 O -0.313 6.313 22 C 0.028 3.972 23 C 0.021 3.979 24 O -0.182 6.182 25 H 0.069 0.931 26 H 0.048 0.952 27 H 0.045 0.955 28 H 0.083 0.917 29 H 0.052 0.948 30 H 0.008 0.992 31 H 0.028 0.972 32 H 0.261 0.739 33 H 0.104 0.896 34 H 0.051 0.949 35 H 0.161 0.839 36 H 0.128 0.872 37 H 0.128 0.872 38 H 0.135 0.865 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.082 -6.573 20.764 21.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.069 4.069 3 N -0.253 5.253 4 C 0.063 3.937 5 C -0.543 4.543 6 H 0.082 0.918 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.725 3.275 10 H -0.196 1.196 11 H -0.211 1.211 12 H -0.210 1.210 13 C -0.012 4.012 14 C 0.026 3.974 15 C -0.228 4.228 16 C -0.085 4.085 17 C -0.130 4.130 18 C -0.118 4.118 19 C -0.221 4.221 20 C 0.100 3.900 21 O -0.227 6.227 22 C -0.067 4.067 23 C -0.027 4.027 24 O -0.083 6.083 25 H 0.088 0.912 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.102 0.898 29 H 0.071 0.929 30 H 0.025 0.975 31 H 0.046 0.954 32 H 0.070 0.930 33 H 0.122 0.878 34 H 0.069 0.931 35 H 0.178 0.822 36 H 0.145 0.855 37 H 0.146 0.854 38 H 0.153 0.847 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.071 -6.627 20.435 21.701 hybrid contribution -0.256 -0.405 -0.627 0.789 sum 2.815 -7.032 19.808 21.207 Atomic orbital electron populations 1.22360 0.99078 1.01274 1.01880 1.21994 0.92407 0.90903 1.01569 1.62459 1.59181 1.02245 1.01404 1.19845 0.95086 0.93730 0.85000 1.21153 1.21891 1.21349 0.89865 0.91774 1.24969 0.95284 0.95247 0.99057 1.69959 1.31978 1.29167 1.22742 0.86454 0.79373 0.79097 0.82600 1.19637 1.21132 1.21031 1.20796 0.97268 0.97505 0.85581 1.22677 0.94109 0.87421 0.93239 1.22178 0.98350 1.04855 0.97461 1.19818 0.94839 0.96612 0.97268 1.20178 0.98114 1.00026 0.94666 1.20455 0.97595 0.95266 0.98482 1.20837 0.95340 1.04661 1.01263 1.17732 0.88678 0.90381 0.93213 1.86174 1.40067 1.45681 1.50758 1.23066 1.03493 0.91074 0.89082 1.18711 0.92176 0.99346 0.92434 1.84062 1.43583 1.45639 1.34982 0.91186 0.93261 0.93613 0.89814 0.92937 0.97453 0.95400 0.92972 0.87824 0.93068 0.82171 0.85452 0.85412 0.84710 0.92546 0.92624 0.88192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.55 9.26 37.16 0.34 -3.21 16 2 C 0.06 1.22 5.71 -3.82 -0.02 1.20 16 3 N -0.53 -11.33 4.69 -237.52 -1.11 -12.44 16 4 C 0.19 4.71 4.52 -4.98 -0.02 4.69 16 5 C -0.50 -13.89 8.40 -34.44 -0.29 -14.18 16 6 H 0.06 1.78 7.38 -52.48 -0.39 1.39 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.20 13.29 55.43 0.74 -25.46 16 9 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 10 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 C 0.12 2.11 5.26 -4.98 -0.03 2.08 16 14 C 0.07 1.29 5.81 -35.80 -0.21 1.08 16 15 C -0.21 -3.32 11.01 -37.62 -0.41 -3.74 16 16 C -0.08 -1.29 6.40 -105.18 -0.67 -1.97 16 17 C -0.11 -1.38 10.05 -39.65 -0.40 -1.78 16 18 C -0.10 -1.06 9.98 -39.96 -0.40 -1.46 16 19 C -0.20 -2.25 9.03 -39.38 -0.36 -2.60 16 20 C 0.15 2.07 6.70 -39.13 -0.26 1.81 16 21 O -0.31 -4.24 10.50 -19.58 -0.21 -4.45 16 22 C 0.03 0.22 9.81 101.05 0.99 1.21 16 23 C 0.02 0.35 7.36 -38.37 -0.28 0.07 16 24 O -0.18 -3.30 9.90 3.80 0.04 -3.27 16 25 H 0.07 1.47 6.28 -51.93 -0.33 1.15 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.04 0.82 6.34 -51.93 -0.33 0.49 16 28 H 0.08 1.83 6.98 -51.93 -0.36 1.47 16 29 H 0.05 1.04 6.68 -51.93 -0.35 0.70 16 30 H 0.01 0.20 6.01 -51.93 -0.31 -0.11 16 31 H 0.03 0.73 7.91 -51.93 -0.41 0.32 16 32 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.10 1.73 7.92 -51.93 -0.41 1.32 16 34 H 0.05 0.91 6.07 -51.92 -0.32 0.60 16 35 H 0.16 2.25 8.06 -52.49 -0.42 1.83 16 36 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 37 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 38 H 0.14 1.07 6.27 -52.48 -0.33 0.74 16 39 H 0.06 0.38 7.66 -51.93 -0.40 -0.02 16 40 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 41 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 335.90 15.07 5.06 5.06 Total: -1.00 -31.30 335.90 -8.19 -39.49 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -5.57 Total: -0.09 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: -2.11 Total: -15.33 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: -0.38 Total: -37.90 kcal Atomic # 8 Polarization: -7.55 SS G_CDS: -0.17 Total: -7.71 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.30 -8.19 -39.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768242936.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.156 kcal (2) G-P(sol) polarization free energy of solvation -31.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds