Wall clock time and date at job start Tue Mar 31 2020 05:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46900 * 109.47074 * 2 1 4 4 C 1.46898 * 110.99794 * 298.12816 * 3 2 1 5 5 C 1.50702 * 109.47181 * 292.93152 * 4 3 2 6 6 H 1.08004 * 119.99779 * 354.96158 * 5 4 3 7 7 C 1.37879 * 120.00095 * 174.96230 * 5 4 3 8 8 N 1.31510 * 119.99976 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99909 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46806 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47217 * 119.99512 * 9 7 5 12 12 H 1.48496 * 109.46950 * 240.00150 * 9 7 5 13 13 C 1.46899 * 110.99996 * 62.08039 * 3 2 1 14 14 C 1.50697 * 109.47294 * 66.04530 * 13 3 2 15 15 C 1.34013 * 124.93955 * 90.00293 * 14 13 3 16 16 C 1.46779 * 106.19616 * 180.02562 * 15 14 13 17 17 C 1.39527 * 134.32689 * 180.02562 * 16 15 14 18 18 C 1.36715 * 119.82255 * 180.02562 * 17 16 15 19 19 C 1.38716 * 120.46160 * 359.96195 * 18 17 16 20 20 C 1.38302 * 120.61842 * 0.02562 * 19 18 17 21 21 O 1.35948 * 120.13816 * 180.02562 * 20 19 18 22 22 C 1.42902 * 117.00310 * 359.97438 * 21 20 19 23 23 C 1.39384 * 119.72275 * 359.97438 * 20 19 18 24 24 O 1.34429 * 124.93791 * 269.69827 * 14 13 3 25 25 H 1.09006 * 109.46822 * 59.67179 * 1 2 3 26 26 H 1.08998 * 109.47147 * 179.66598 * 1 2 3 27 27 H 1.08991 * 109.47547 * 299.67009 * 1 2 3 28 28 H 1.08994 * 109.47288 * 239.99831 * 2 1 3 29 29 H 1.08997 * 109.46790 * 119.99813 * 2 1 3 30 30 H 1.08996 * 109.47945 * 52.93446 * 4 3 2 31 31 H 1.09000 * 109.47057 * 172.93625 * 4 3 2 32 32 H 0.97000 * 119.99961 * 180.02562 * 8 7 5 33 33 H 1.09005 * 109.47114 * 186.04805 * 13 3 2 34 34 H 1.09009 * 109.47055 * 306.04736 * 13 3 2 35 35 H 1.07995 * 126.89813 * 359.97328 * 15 14 13 36 36 H 1.08002 * 120.08801 * 359.94256 * 17 16 15 37 37 H 1.08001 * 119.77133 * 179.97438 * 18 17 16 38 38 H 1.08003 * 119.69432 * 179.97438 * 19 18 17 39 39 H 1.09006 * 109.46970 * 299.99640 * 22 21 20 40 40 H 1.09001 * 109.47344 * 59.99705 * 22 21 20 41 41 H 1.08996 * 109.47669 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5856 2.0968 -1.2095 5 6 2.2647 1.4994 -2.4149 6 1 3.0107 0.7289 -2.2879 7 6 1.9336 1.9366 -3.6799 8 7 1.0255 2.8753 -3.8346 9 14 2.7749 1.1956 -5.1742 10 1 3.7505 0.1665 -4.7333 11 1 1.7571 0.5684 -6.0550 12 1 3.4863 2.2633 -5.9218 13 6 1.5897 2.0954 1.2118 14 6 2.2536 1.4804 2.4168 15 6 3.4345 1.8634 2.9215 16 6 3.6853 0.9969 4.0794 17 6 4.7180 0.8898 5.0115 18 6 4.6472 -0.0526 5.9994 19 6 3.5549 -0.9036 6.0826 20 6 2.5207 -0.8136 5.1687 21 8 1.4546 -1.6522 5.2597 22 6 1.4672 -2.6045 6.3251 23 6 2.5756 0.1411 4.1547 24 8 1.7446 0.4717 3.1453 25 1 -0.3633 0.5190 -0.8871 26 1 -0.3633 -1.0276 -0.0060 27 1 -0.3634 0.5086 0.8928 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 0.5050 2.0037 -1.3179 31 1 1.8529 3.1502 -1.1267 32 1 0.7924 3.1826 -4.7246 33 1 1.8729 3.1454 1.1372 34 1 0.5073 2.0173 1.3140 35 1 4.0736 2.6508 2.5503 36 1 5.5716 1.5488 4.9519 37 1 5.4473 -0.1350 6.7202 38 1 3.5120 -1.6438 6.8678 39 1 2.3398 -3.2501 6.2250 40 1 1.5103 -2.0809 7.2801 41 1 0.5611 -3.2089 6.2831 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000768242936.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:49 Heat of formation + Delta-G solvation = -18.885566 kcal Electronic energy + Delta-G solvation = -22756.755603 eV Core-core repulsion = 19410.092181 eV Total energy + Delta-G solvation = -3346.663422 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.47690 -40.50600 -38.97685 -37.83988 -34.80809 -33.61830 -31.78367 -31.15756 -30.64670 -28.91016 -28.02802 -26.34315 -25.06096 -23.90097 -22.63411 -22.25640 -20.96313 -18.97614 -18.50596 -18.34626 -17.61024 -17.08285 -16.88289 -16.68456 -16.28985 -16.09137 -15.74777 -15.70669 -14.72979 -14.57427 -14.26011 -14.06875 -13.80727 -13.47304 -13.29050 -13.25041 -13.14020 -12.86275 -12.71060 -12.57558 -12.47902 -12.26253 -12.21268 -12.17625 -11.94147 -11.62917 -11.31144 -10.69022 -10.58735 -9.54095 -9.04685 -8.80393 -8.18335 -6.26927 -0.06378 0.36913 1.33186 1.41394 1.42778 1.55729 1.68767 2.27033 2.42119 2.72287 3.14760 3.30028 3.43989 3.83777 3.90987 4.04818 4.15127 4.21672 4.29090 4.36227 4.37659 4.40518 4.41621 4.49700 4.57767 4.61352 4.72492 4.79834 4.87893 4.94550 5.14491 5.17656 5.20798 5.31019 5.41335 5.44488 5.50871 5.67191 5.73058 5.99021 6.05324 6.25642 6.45299 6.54133 6.87880 7.41870 8.92275 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.025578 B = 0.003538 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.417318 B = 7911.366418 C = 8298.685336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.065 3.935 3 N -0.536 5.536 4 C 0.203 3.797 5 C -0.518 4.518 6 H 0.057 0.943 7 C 0.006 3.994 8 N -0.931 5.931 9 Si 0.964 3.036 10 H -0.267 1.267 11 H -0.279 1.279 12 H -0.278 1.278 13 C 0.122 3.878 14 C 0.048 3.952 15 C -0.202 4.202 16 C -0.104 4.104 17 C -0.118 4.118 18 C -0.089 4.089 19 C -0.187 4.187 20 C 0.124 3.876 21 O -0.343 6.343 22 C 0.017 3.983 23 C -0.014 4.014 24 O -0.205 6.205 25 H 0.044 0.956 26 H 0.069 0.931 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.059 0.941 30 H -0.012 1.012 31 H 0.010 0.990 32 H 0.264 0.736 33 H 0.113 0.887 34 H 0.050 0.950 35 H 0.174 0.826 36 H 0.151 0.849 37 H 0.170 0.830 38 H 0.172 0.828 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.851 -7.935 22.885 24.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.063 4.063 3 N -0.260 5.260 4 C 0.077 3.923 5 C -0.557 4.557 6 H 0.076 0.924 7 C -0.192 4.192 8 N -0.572 5.572 9 Si 0.789 3.211 10 H -0.191 1.191 11 H -0.205 1.205 12 H -0.204 1.204 13 C -0.006 4.006 14 C -0.001 4.001 15 C -0.222 4.222 16 C -0.105 4.105 17 C -0.136 4.136 18 C -0.107 4.107 19 C -0.205 4.205 20 C 0.079 3.921 21 O -0.258 6.258 22 C -0.077 4.077 23 C -0.062 4.062 24 O -0.107 6.107 25 H 0.063 0.937 26 H 0.088 0.912 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.006 0.994 31 H 0.028 0.972 32 H 0.073 0.927 33 H 0.131 0.869 34 H 0.068 0.932 35 H 0.191 0.809 36 H 0.168 0.832 37 H 0.188 0.812 38 H 0.189 0.811 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 4.846 -8.000 22.583 24.443 hybrid contribution -0.765 -0.061 -1.068 1.315 sum 4.081 -8.060 21.515 23.335 Atomic orbital electron populations 1.22225 0.97966 1.02304 1.00933 1.21898 0.93279 0.90280 1.00840 1.62321 1.59579 1.02615 1.01436 1.19498 0.93592 0.92934 0.86236 1.21410 1.21892 1.21262 0.91114 0.92433 1.25796 0.95855 0.95576 1.01994 1.70067 1.33206 1.30334 1.23592 0.85411 0.78412 0.78415 0.78849 1.19111 1.20512 1.20352 1.20717 0.97372 0.97782 0.84692 1.22391 0.95067 0.88806 0.93788 1.22458 0.97654 1.04649 0.97414 1.20065 0.95814 0.96675 0.97989 1.20577 0.97894 1.00891 0.94233 1.20991 0.98104 0.93511 0.98079 1.21355 0.93974 1.04621 1.00577 1.18077 0.89933 0.90565 0.93520 1.86132 1.40273 1.46518 1.52883 1.23414 1.05058 0.90661 0.88521 1.19329 0.92726 1.01005 0.93094 1.83980 1.44648 1.46130 1.35955 0.93660 0.91207 0.92860 0.91652 0.92283 0.99425 0.97152 0.92710 0.86920 0.93161 0.80860 0.83156 0.81212 0.81096 0.91010 0.90775 0.86771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.85 9.26 71.98 0.67 -6.18 16 2 C 0.07 2.75 5.71 86.30 0.49 3.24 16 3 N -0.54 -23.80 4.69 -905.37 -4.24 -28.04 16 4 C 0.20 10.61 4.52 85.56 0.39 11.00 16 5 C -0.52 -29.31 8.40 25.60 0.21 -29.09 16 6 H 0.06 3.27 7.38 -2.91 -0.02 3.24 16 7 C 0.01 0.34 5.46 84.66 0.46 0.80 16 8 N -0.93 -55.34 13.29 21.45 0.28 -55.06 16 9 Si 0.96 44.49 29.54 68.60 2.03 46.52 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 12 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 13 C 0.12 4.59 5.26 85.56 0.45 5.04 16 14 C 0.05 1.70 5.81 24.72 0.14 1.85 16 15 C -0.20 -6.48 11.01 23.54 0.26 -6.22 16 16 C -0.10 -3.14 6.40 -20.22 -0.13 -3.27 16 17 C -0.12 -2.60 10.05 22.22 0.22 -2.37 16 18 C -0.09 -1.52 9.98 22.03 0.22 -1.30 16 19 C -0.19 -3.50 9.03 22.40 0.20 -3.29 16 20 C 0.12 3.39 6.70 22.56 0.15 3.54 16 21 O -0.34 -9.00 10.50 -92.97 -0.98 -9.98 16 22 C 0.02 0.23 9.81 113.37 1.11 1.35 16 23 C -0.01 -0.48 7.36 23.06 0.17 -0.31 16 24 O -0.20 -7.70 9.90 -9.32 -0.09 -7.80 16 25 H 0.04 1.98 6.28 -2.38 -0.01 1.96 16 26 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 27 H 0.05 1.97 6.34 -2.39 -0.02 1.95 16 28 H 0.06 2.96 6.98 -2.39 -0.02 2.94 16 29 H 0.06 2.42 6.68 -2.39 -0.02 2.40 16 30 H -0.01 -0.66 6.01 -2.39 -0.01 -0.68 16 31 H 0.01 0.57 7.91 -2.39 -0.02 0.55 16 32 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 33 H 0.11 3.92 7.92 -2.38 -0.02 3.91 16 34 H 0.05 1.88 6.07 -2.38 -0.01 1.86 16 35 H 0.17 4.84 8.06 -2.91 -0.02 4.82 16 36 H 0.15 2.53 8.06 -2.91 -0.02 2.50 16 37 H 0.17 1.49 8.06 -2.91 -0.02 1.46 16 38 H 0.17 1.86 6.27 -2.91 -0.02 1.84 16 39 H 0.07 0.73 7.66 -2.38 -0.02 0.72 16 40 H 0.07 0.71 7.66 -2.39 -0.02 0.69 16 41 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -69.88 335.90 3.06 -66.82 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: 1.04 Total: 12.76 kcal Atomic # 6 Polarization: -30.25 SS G_CDS: 5.03 Total: -25.22 kcal Atomic # 7 Polarization: -79.14 SS G_CDS: -3.96 Total: -83.10 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -1.07 Total: -17.77 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -69.88 3.06 -66.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768242936.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.934 kcal (2) G-P(sol) polarization free energy of solvation -69.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds